Transcription and chromatin converge: Lessons from yeast genetics

Current Opinion in Genetics and Development

Volumn 11, Issue 2, 2001, Pages 142-147

  Gregory, P D ^a  

^a SANGAMO BIOSCIENCES INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

ACETYLATION; CHROMATIN CONDENSATION; FUNGAL GENETICS; GENE ACTIVATION; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REVIEW; TRANSACTIVATION; TRANSCRIPTION REGULATION;

EID: 0035313730     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-437X(00)00171-4     Document Type: Review

References (56)

1. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
2. Promoter targeting and chromatin remodeling by the SWI/SNF complex
3. ATP-dependent chromatin-remodeling complexes
4. Acetylation of histones and transcription-related factors
5. Histone deacetylases: Silencers for hire
6. A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter
7. The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter
8. Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation
9. Transcriptional activation by Gcn4p involves independent interactions with the SWI/SNF complex and the SRB/mediator
10. Activation domain-mediated targeting of the SWI/SNF complex to promoters stimulates transcription from nucleosome arrays
11. Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding
12. Histone acetyltransferase activity of yeast Gcn5p is required for the activation of target genes in vivo
13. Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription
14. Global role for chromatin remodeling enzymes in mitotic gene expression
15. Distribution of acetylated histones resulting from Gal4-VP16 recruitment of SAGA and NuA4 complexes
16. Esa1p is an essential histone acetyltransferase required for cell cycle progression
17. NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p
18. Activation domain-specific and general transcription stimulation by native histone acetyltransferase complexes
19. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
20. Mediator-nucleosome interaction
21. Dissecting the regulatory circuitry of a eukaryotic genome
22. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity
23. TAF-Containing and TAF independent forms of transcriptionally active TBP in vivo
24. Distinct classes of yeast promoters revealed by differential TAF recruitment
25. A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation
26. TFG/TAF30/ANC1, a component of the yeast SWI/SNF complex that is similar to the leukemogenic proteins ENL and AF-9
27. TBP-associated factors (TAFIIs): Multiple, selective transcriptional mediators in common complexes
28. Redundant roles for the TFIID and SAGA complexes in global transcription
29. Steady-state levels of histone acetylation in Saccharomyces cerevisiae
30. Cell cycle-regulated histone acetylation required for expression of the yeast HO gene
31. Global histone acetylation and deacetylation in yeast
32. Acetylation: A regulatory modification to rival phosphorylation?
33. Requirement of RSF and FACT for transcription of chromatin templates in vitro
34. FACT, a factor that facilitates transcript elongation through nucleosomes
35. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
36. Functional interaction of general transcription initiation factor TFIIE with general chromatin factor SPT16/CDC68
37. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an Ada complex and the SAGA (Spt/Ada) complex
38. The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex
39. Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation
40. A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme
41. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
42. Transcriptional repression of the yeast CHA1 gene requires the chromatin-remodeling complex RSC
43. Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae
44. The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
45. Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo
46. ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex
47. Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter
48. Structure and ligand of a histone acetyltransferase bromodomain
49. Structure and function of a human TAFII250 double bromodomain module
50. The Gcn5 bromodomain coordinates nucleosome remodelling
51. Continuous and widespread roles for the Swi-Snf complex in transcription
52. The nucleosome remodeling complex, Snf/Swi, is required for the maintenance of transcription in vivo and is partially redundant with the histone acetyltransferase, Gcn5
53. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter
54. Histone acetylation at promoters is differentially affected by specific activators and repressors
55. Genome-wide location and function of DNA binding proteins
56. Preferential accessibility of the yeast his 3 promoter is determined by a general property of the DNA sequence, not by specific elements