Bacterial diversity in an arctic lake: A freshwater SAR11 cluster

Aquatic Microbial Ecology

Volumn 11, Issue 3, 1996, Pages 271-277

  Bahr, Michele ^a   Hobbie, John E ^a   Sogin, Mitchell L ^b  

^a ECOSYSTEMS CENTER   (United States)

^b MARINE BIOLOGICAL LABORATORY   (United States)

Author keywords

16S rRNA; Arctic; Bacteria; SAR11

Indexed keywords

ALCALIGENES; ALPHAPROTEOBACTERIA; ARTHROBACTER GLOBIFORMIS; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; BURKHOLDERIA; CYTOPHAGA; FLAVOBACTERIUM HYDATIS; PSEUDOMONAS; RALSTONIA PICKETTII; RALSTONIA SOLANACEARUM; WAUTERSIA EUTROPHA; ZOOGLOEA; ZOOGLOEA RAMIGERA;

EID: 0000450150     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame011271     Document Type: Article

References (23)

1. Angert ER, Clements KD, Pace NR (1993) The largest bacterium. Nature 362:239-241
2. Balows A, Truper HG, Dworkin M, Harder W, Schleifer KH (eds) (1992) The prokaryotes. Springer-Verlag, New York
3. Barns SM, Fundyga RE, Jeffries MW, Pace NR (1994) Remarkable archael diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91: 1609-1613
4. Britschgi TB, Giovannoni SJ (1991) Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing. Appl Environ Microbiol 57: 1707-1713
5. DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
6. DeLong EF, Franks DG, Alldredge AL (1993) Phylogenetic diversity of aggregate-attached vs. free-living marine bacteria assemblages Limnol Oceanogr 38:924-934
7. Felsenstein H (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
8. Fuhrman JA, McCallum K Davis AA (1993) Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl Environ Microbiol 59:1294-1302
9. Giovannoni SJ, Britschgi TB, Moyer CL Field KG (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345:60-63
10. Hiraishi A, Hoshino Y Satoh T (1991) Rhodoferax fermentans gen. nov., sp. nov., a phototrophic purple nonsulfur bacterium previously referred to as the 'Rhodocyclus gelatinosus-like' group. Arch Microbiol 155:330-336
11. Hobbie JE (1988) A comparison of the ecology of planktonic bacteria in fresh and salt water. Limnol Oceanogr 33: 750-764
12. Hobbie JE, Corliss TL, Peterson BJ (1978) Seasonal patterns of bacterial abundance in an arctic lake. Arct Alp Res 15: 253-259
13. Li X, Dorsch M, Del Dot T, Sly LI, Stackebrandt E, Hayward AC (1993) Phylogenetic studies of the rRNA group II pseudomonads based on 16S rRNA gene sequences. J Appl Bacteriol 74:324-329
14. Maidak BL, Olson GC, Larsen N, Overbeck R, McCaughey MJ, Woese CR (1996) The Ribosomal Database Project (RDP). Nuc Acids Res 24:82-85
15. Mullins TD, Britschgi TB, Krest RL, Giovannoni SJ (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40:148-158
16. O'Brien WJ, Bahr M, Hershey A, Hobbie J, Kipphut G, Kling G, Kling H, McDonald M, Miller M, Rublee P, Vestal R (1996) The limnology of Toolik Lake. In: Osgood M, Milner S (eds) Freshwaters of Alaska. Springer-Verlag, New York, p 61-106
17. Olsen GJ (1988) Phylogenetic analysis using ribosomal RNA. Meth Enzymol 164:793-812
18. Pace NR, Stahl DA, Lane DJ, Olsen GJ (1986) The analysis of natural microbial populations by ribosomal RNA sequences. Adv Microb Ecol 9:1-55
19. Reasoner DJ, Geldreich EE (1985) A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1-7
20. Rehnstam A, Backman S, Smith DC, Azam F, Hagström Å (1993) Blooms of sequence-specific culturable bacteria in the sea. FEMS Microbiol Ecol 102:161-166
21. Schmidt TM, DeLong EF, Pace NR (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 173:4371-4378
22. Ward DM, Weller R, Bateson MM (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65
23. Woese CR, Stackebrandt E, Macke TJ, Fox GE (1965) A phylogenetic definition of the major eubacterial taxa. Syst Appl Microbiol 6:143-151