Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA

Microbiology

Volumn 143, Issue 12, 1997, Pages 3913-3919

  Zhou, Jizhong ^a,b   Davey, Mary Ellen ^a   Figueras, Jordi B ^a,c   Rivkina, Elizaveta ^d   Gilichinsky, David ^d   Tiedje, James M ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF GIRONA   (Spain)

^d RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

Arctic; Permafrost; Small subunit rDNA

Indexed keywords

BACTERIAL DNA; PLASMID VECTOR; RIBOSOME RNA;

ARTICLE; BACTERIAL GENE; GRAM POSITIVE BACTERIUM; MOLECULAR CLONING; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RUSSIAN FEDERATION;

BACTERIA (MICROORGANISMS); DELTAPROTEOBACTERIA; FIBROBACTER; GAMMAPROTEOBACTERIA; POSIBACTERIA; PROKARYOTA; PROTEOBACTERIA;

EID: 0031436948     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-143-12-3913     Document Type: Article

References (16)

1. Borneman, J., Skroch, P. W., O'Sullivan, K. M., Palus, J. A., Rumjanek, N. G., Jansen, J. L., Nienhuis, J. & Triplett, E. W. (1996). Molecular microbial diversity of an agricultural soil in Wisconsin. Appl Environ Microbiol 62, 1935-1943.
2. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
3. Dunican, L. K. & Rosswall, T. (1974). Taxonomy and physiology of tundra bacteria in a relation to site characteristics. In Soil Organisms and Decomposition in Tundra, pp. 79-92. Edited by A. J. Holding, O. W. Heal, S. F. Maclean, Jr & P. W. Flanagan. Stockholm: IBP Tundra Biome Steering Committee.
4. Felsenstein, J. (1989). PHYLIP - Phylogeny inference package (Version 3.2). Cladistics 5, 164-166.
5. Gray, J. P. & Herwig, R. P. (1996). Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62, 4049-4059.
6. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Kwok, S. & Higuchi, R. (1989). Avoiding positives with PCR. Nature 339, 237-238.
8. Liesack, W. & Stackebrandt, E. (1992). Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bacteriol 174, 5072-5078.
9. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1997). The RDP (Ribosomal Database Project). Nucleic Acids Res 25, 109-111.
10. Moyer, C. L., Dobbs, F. C. & Karl, D. M. (1994). Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 60, 871-879.
11. Moyer, C. L., Dobbs, F. C. & Karl, D. M. (1995). Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 61, 1551-1562.
12. Stackebrandt, E., Liesack, W. & Goebel, B. M. (1993). Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J 7, 232-236.
13. Ueda, T., Suga, Y. & Matsuguchi, T. (1995). Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur J Soil Sci 46, 415-421.
14. Weisburg, W. W., Barns, S. M., Pelletier, D. A. & Lane, D. J (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
15. Zhou, J.-Z., Fries, M. R., Chee-Sanford, J. & Tiedje, J. M. (1995). Phylogenetic analysis of a new group of denitrifiers capable of anaerobic growth on toluene: description of Azoarcus tolulyticus sp. nov. Int J Syst Bacteriol 45, 500-506.
16. Zhou, J.-Z., Bruns, M. A. & Tiedje, J. M. (1996). DNA recovery from soils of diverse composition. Appl Environ Microbiol 62, 461-468.