-
1
-
-
0002206089
-
Microscopic methods for counting bacteria and fungi in soil
-
K. Alef and P. Nannipieri (ed.). Academic Press Ltd., London, England
-
Bloem, J., P. R. Bolhuis, M. R. Veringa, and J. Weiringa. 1995. Microscopic methods for counting bacteria and fungi in soil, p. 162-173. In K. Alef and P. Nannipieri (ed.), Methods in applied soil microbiology and biochemistry. Academic Press Ltd., London, England.
-
(1995)
Methods in Applied Soil Microbiology and Biochemistry
, pp. 162-173
-
-
Bloem, J.1
Bolhuis, P.R.2
Veringa, M.R.3
Weiringa, J.4
-
2
-
-
0024926908
-
A dilute medium to determine population size of ammonia oxidizers in forest soils
-
Donaldson, J. M., and G. S. Henderson. 1989. A dilute medium to determine population size of ammonia oxidizers in forest soils. Soil Sci. Soc. Am. J. 53:60-62.
-
(1989)
Soil Sci. Soc. Am. J.
, vol.53
, pp. 60-62
-
-
Donaldson, J.M.1
Henderson, G.S.2
-
4
-
-
0031811411
-
Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soils
-
Felske, A., and A. D. L. Akkermans. 1998. Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soils. Microb. Ecol. 34:31-36.
-
(1998)
Microb. Ecol.
, vol.34
, pp. 31-36
-
-
Felske, A.1
Akkermans, A.D.L.2
-
5
-
-
0030790950
-
Direct molecular biological analysis of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure
-
Hastings, R. C., M. T. Ceccherini, N. Miclaus, J. R. Saunders, M. Bazzicalupo. and A. J. McCarthy. 1997. Direct molecular biological analysis of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure. FEMS Microbiol. Ecol. 23:45-54.
-
(1997)
FEMS Microbiol. Ecol.
, vol.23
, pp. 45-54
-
-
Hastings, R.C.1
Ceccherini, M.T.2
Miclaus, N.3
Saunders, J.R.4
Bazzicalupo, M.5
McCarthy, A.J.6
-
6
-
-
0027184336
-
The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
-
Head, I. M., W. D. Hiorns, T. M. Embley, A. J. McCarthy, and J. R. Saunders. 1993. The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J. Gen. Microbiol. 139:1147-1153.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 1147-1153
-
-
Head, I.M.1
Hiorns, W.D.2
Embley, T.M.3
McCarthy, A.J.4
Saunders, J.R.5
-
7
-
-
0000654958
-
Microbial biomass
-
R. W. Weaver et al. (ed.). Soil Science Society of America, Madison, Wis.
-
Horwath, W. R., and E. A. Paul. 1994. Microbial biomass, p. 753-773. In R. W. Weaver et al. (ed.), Methods of soil analysis. Part 2 - microbiological and biochemical properties. Soil Science Society of America, Madison, Wis.
-
(1994)
Methods of Soil Analysis. Part 2 - Microbiological and Biochemical Properties
, pp. 753-773
-
-
Horwath, W.R.1
Paul, E.A.2
-
8
-
-
0345512273
-
-
24 May, last date accessed
-
7a.Kellogg Biological Station Long-Term Ecological Research. Michigan State University Board of Trustees. [Online.] http://lter.kbs.msu.edu. [24 May 1999, last date accessed.]
-
(1999)
Michigan State University Board of Trustees. [Online.]
-
-
-
9
-
-
0001418558
-
Heterotrophic nitrification
-
J. I. Prosser (ed.). IRL Press, Oxford, United Kingdom
-
Killham, K. 1986. Heterotrophic nitrification, p. 117-126. In J. I. Prosser (ed.), Nitrification. IRL Press, Oxford, United Kingdom.
-
(1986)
Nitrification
, pp. 117-126
-
-
Killham, K.1
-
10
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
11
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
-
Kowalchuk, G. A., J. R. Stephen, W. De Boer, J. I. Prosser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
De Boer, W.3
Prosser, J.I.4
Embley, T.M.5
Woldendorp, J.W.6
-
12
-
-
0032436805
-
Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation
-
Kowalchuk, G. A., P. L. E. Bodelier, H. J. G. Heilig, J. R. Stephen, and H. J. Laanbroek. 1998. Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation. FEMS Microbiol. Ecol. 27:339-350.
-
(1998)
FEMS Microbiol. Ecol.
, vol.27
, pp. 339-350
-
-
Kowalchuk, G.A.1
Bodelier, P.L.E.2
Heilig, H.J.G.3
Stephen, J.R.4
Laanbroek, H.J.5
-
13
-
-
0028170111
-
The Ribosomal Database Project
-
Maidak, B. L., N. Larsen, N., J. McCaughey, R. Overbeek, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1994. The Ribosomal Database Project. Nucleic Acids Res. 22:3485-3487.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3485-3487
-
-
Maidak, B.L.1
Larsen, N.2
McCaughey, N.J.3
Overbeek, R.4
Olsen, G.J.5
Fogel, K.6
Blandy, J.7
Woese, C.R.8
-
14
-
-
0028240270
-
Molecular analysis of enrichment cultures of marine ammonia oxidisers
-
McCaig, A. E., T. M. Embley, and J. I. Prosser. 1994. Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol. Lett. 120:363-368.
-
(1994)
FEMS Microbiol. Lett.
, vol.120
, pp. 363-368
-
-
McCaig, A.E.1
Embley, T.M.2
Prosser, J.I.3
-
15
-
-
0032954211
-
Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments
-
McCaig, A. E., C. J. Phillips, J. R. Stephen, G. A. Kowalchuk, S. M. Harvey, R. A. Herbert, T. M. Embley, and J. I. Prosser. 1999. Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments. Appl. Environ. Microbiol. 65:213-220.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 213-220
-
-
McCaig, A.E.1
Phillips, C.J.2
Stephen, J.R.3
Kowalchuk, G.A.4
Harvey, S.M.5
Herbert, R.A.6
Embley, T.M.7
Prosser, J.I.8
-
16
-
-
0001394978
-
Changes in soil organic carbon and nitrogen as a result of cultivation
-
A. F. Bouwman (ed.). John Wiley & Sons, Ltd., London, England
-
Post, W. M., and L. K. Mann. 1990. Changes in soil organic carbon and nitrogen as a result of cultivation, p. 401-406. In A. F. Bouwman (ed.), Soils and the greenhouse effect. John Wiley & Sons, Ltd., London, England.
-
(1990)
Soils and the Greenhouse Effect
, pp. 401-406
-
-
Post, W.M.1
Mann, L.K.2
-
17
-
-
0024822090
-
Autotrophic nitrification in bacteria
-
Presser, J. I. 1989. Autotrophic nitrification in bacteria. Adv. Microbiol. Physiol. 30:125-181.
-
(1989)
Adv. Microbiol. Physiol.
, vol.30
, pp. 125-181
-
-
Presser, J.I.1
-
18
-
-
0001679508
-
Inhibition of nitrification in climax ecosystems
-
Rice, E. L., and S. K. Pancholy. 1972. Inhibition of nitrification in climax ecosystems. Am. J. Bot. 59:1033-1040.
-
(1972)
Am. J. Bot.
, vol.59
, pp. 1033-1040
-
-
Rice, E.L.1
Pancholy, S.K.2
-
19
-
-
0020454990
-
Factors regulating nitrification in primary and secondary succession
-
Robertson, G. P. 1982. Factors regulating nitrification in primary and secondary succession. Ecology 63:1561-1573.
-
(1982)
Ecology
, vol.63
, pp. 1561-1573
-
-
Robertson, G.P.1
-
20
-
-
0000506120
-
Nitrogen use efficiency in row-crop agriculture: Crop nitrogen use and soil nitrogen loss
-
L. E. Jackson (ed.). Academic Press, San Diego, Calif.
-
Robertson, G. P. 1997. Nitrogen use efficiency in row-crop agriculture: crop nitrogen use and soil nitrogen loss, p. 347-365. In L. E. Jackson (ed.), Ecology in agriculture. Academic Press, San Diego, Calif.
-
(1997)
Ecology in Agriculture
, pp. 347-365
-
-
Robertson, G.P.1
-
21
-
-
0030616819
-
Soil resources, microbial activity, and primary production across an agricultural ecosystem
-
Robertson, G. P., K. M. Klingensmith, M. J. Klug, E. A. Paul, J. R. Crum, and B. G. Ellis. 1997. Soil resources, microbial activity, and primary production across an agricultural ecosystem. Ecol. Appl. 7:158-170.
-
(1997)
Ecol. Appl.
, vol.7
, pp. 158-170
-
-
Robertson, G.P.1
Klingensmith, K.M.2
Klug, M.J.3
Paul, E.A.4
Crum, J.R.5
Ellis, B.G.6
-
22
-
-
0017337858
-
Microtechnique for most-probable-number analysis
-
Rowe, R., R. Todd, and J. Waide. 1977. Microtechnique for most-probable-number analysis. Appl. Environ. Microbiol. 33:675-680.
-
(1977)
Appl. Environ. Microbiol.
, vol.33
, pp. 675-680
-
-
Rowe, R.1
Todd, R.2
Waide, J.3
-
23
-
-
0023375195
-
The neighbor joining method: A method for constructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor joining method: a method for constructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
24
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Plainview, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Plainview, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
25
-
-
0000489932
-
Nitrifying bacteria
-
A. L. Page, R. H. Miller, and D. R. Keeney (ed.). American Society of Agronomy, Madison, Wis.
-
Schmidt, E. L., and L. W. Belser. 1982. Nitrifying bacteria, p. 1027-1041. In A. L. Page, R. H. Miller, and D. R. Keeney (ed.), Methods of soil analysis, part 2. Chemical and microbiological properties. American Society of Agronomy, Madison, Wis.
-
(1982)
Methods of Soil Analysis, Part 2. Chemical and Microbiological Properties
, pp. 1027-1041
-
-
Schmidt, E.L.1
Belser, L.W.2
-
26
-
-
0030619115
-
High rates of nitrification and nitrate turnover in undisturbed coniferous forests
-
Stark, J. M., and S. C. Hart. 1997. High rates of nitrification and nitrate turnover in undisturbed coniferous forests. Nature 385:61-64.
-
(1997)
Nature
, vol.385
, pp. 61-64
-
-
Stark, J.M.1
Hart, S.C.2
-
27
-
-
0029805297
-
Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
-
Stephen, J. R., A. E. McCaig, Z. Smith, J. I. Prosser, and T. M. Embley. 1996. Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 62:4147-4154.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4147-4154
-
-
Stephen, J.R.1
McCaig, A.E.2
Smith, Z.3
Prosser, J.I.4
Embley, T.M.5
-
28
-
-
0031904158
-
Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soils by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
-
Stephen, J. R., G. A. Kowalchuk, M-A. V. Bruns, A. E. McCaig, C. J. Phillips, T. M. Embley, and J. I. Prosser. 1998. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soils by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:2958-2965.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2958-2965
-
-
Stephen, J.R.1
Kowalchuk, G.A.2
Bruns, M.-A.V.3
McCaig, A.E.4
Phillips, C.J.5
Embley, T.M.6
Prosser, J.I.7
-
30
-
-
0003449416
-
-
Department of Microbiology, Technical University of Munich, Munich, Germany
-
Strunk, O., and W. Ludwig. 1997. ARB: a software environment for sequence data, 2.1.1. Department of Microbiology, Technical University of Munich, Munich, Germany.
-
(1997)
ARB: A Software Environment for Sequence Data, 2.1.1
-
-
Strunk, O.1
Ludwig, W.2
-
32
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
34
-
-
0028079873
-
Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria
-
Teske, A., E. Alm, J. M. Regan, S. Toze, B. E. Rittmann, and D. A. Stahl. 1994. Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J. Bacteriol. 176:6623-6630.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6623-6630
-
-
Teske, A.1
Alm, E.2
Regan, J.M.3
Toze, S.4
Rittmann, B.E.5
Stahl, D.A.6
-
35
-
-
0345080788
-
-
U.S. Department of Agriculture, Washington, D.C.
-
33a.U.S. Department of Agriculture. 1992. U.S. soil classification system. U.S. Department of Agriculture, Washington, D.C.
-
(1992)
U.S. Soil Classification System
-
-
-
36
-
-
0030040940
-
Phylogenetic analysis of seven new isolates of ammonia-oxidising bacteria based on 16S rRNA gene sequences
-
Utaker, J. B., L. Bakken, Q. Q. Jiang, and I. F. Nes. 1995. Phylogenetic analysis of seven new isolates of ammonia-oxidising bacteria based on 16S rRNA gene sequences. Syst. Appl. Microbiol. 18:549-559.
-
(1995)
Syst. Appl. Microbiol.
, vol.18
, pp. 549-559
-
-
Utaker, J.B.1
Bakken, L.2
Jiang, Q.Q.3
Nes, I.F.4
-
37
-
-
0031863938
-
Gross nitrogen transformations in grassland soils as affected by previous management intensity
-
Watson, C. J., and C. L. Mills. 1998. Gross nitrogen transformations in grassland soils as affected by previous management intensity. Soil Biol. Biochem. 30:743-753.
-
(1998)
Soil Biol. Biochem.
, vol.30
, pp. 743-753
-
-
Watson, C.J.1
Mills, C.L.2
-
38
-
-
0003140215
-
Nitrification as a bacterial energy source
-
J. I. Prosser (ed.). Society of General Microbiology, London, England
-
Wood, P. M. 1989. Nitrification as a bacterial energy source, p. 39-62. In J. I. Prosser (ed.), Nitrification. Society of General Microbiology, London, England.
-
(1989)
Nitrification
, pp. 39-62
-
-
Wood, P.M.1
|