Microbial diversity at 83°C in Calcite Springs, Yellowstone National Park: Another environment where the Aquificales and 'Korarchaeota' coexist

Extremophiles

Volumn 4, Issue 1, 2000, Pages 61-67

  Reysenbach, Anna Louise ^a,d   Ehringer, Marissa ^b   Hershberger, Karen ^c  

^a The State University of New Jersey   (United States)

^b UNIVERSITY OF COLORADO   (United States)

^c BETH ISRAEL DEACONESS MEDICAL CENTER   (United States)

^d PORTLAND STATE UNIVERSITY   (United States)

Author keywords

16S rRNA; Aquificales; Archaea; Hyperthermophiles; Korarchaeota

Indexed keywords

AQUIFICALES; BACTERIAL DNA; BIOGEOCHEMICAL CYCLING; CLONE; ENVIRONMENT; GENE SEQUENCING; GENETIC DIFFERENCE; GENETIC DIVERSITY; GENETIC LINE; IN SITU HYBRIDIZATION; KORARCHAEOTA; MICROBIAL ECOLOGY; OLIGONUCLEOTIDE PROBE; PHYLOGENY; RIBOSOMAL RNA; THERMAL SPRING; UNITED STATES;

AQUIFICALES; ARCHAEA; BACTERIA (MICROORGANISMS); KORARCHAEOTA;

EID: 0034013150     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007920050008     Document Type: Article

References (37)

1. Amann RI, Ludwig W, Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
2. Angert ER, Clements KD, Pace NR (1993) The largest bacterium. Nature (Lond) 362:239-241
3. Aragno M (1990) Thermophilic, aerobic, hydrogen-oxidizing (Knallgas) bacteria. In: Balows A, Truper HG, Dworkin M, Harder W, Schleifer KH (eds) The Prokaryotes, vol 4. Springer, Berlin, pp. 3917-3933
4. Barns SM, Fundyga RE, Jeffries MW, Pace NR (1994) Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91:1609-1613
5. Barns SM, Delwiche CF, Palmer JD, Pace NR (1996) Perspectives on archeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci USA 93:9188-9193
6. Baross JA, Deming JW (1996) Growth at high temperatures: isolation and taxonomy, physiology and ecology. In: Karl DM (ed) Microbiology of deep-sea hydrothermal vents. CRC Press, Caldwell, NJ, pp. 169-217
7. Bollet C, Gevaudan MJ, Lamballerie X, Zandotti C, Micco P (1991) A simple method for the isolation of chromosomal DNA from gram-positive or acid-fast bacteria. Nucleic Acids Res 19:1955
8. Brock TD (1978) Thermophilic microorganisms and life at high temperatures. Springer-Verlag, New York
9. Brock TD, Darland GK (1970) Limits of microbial existence: temperature and pH. Science 169:1316-1318
10. Burggraf S, Mayer T, Amann R, Schadhauser S, Woese CR, Stetter KO (1994) Identifying Archaea with rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 60:3112-3119
11. Burggraf S, Heyder P, Eis N (1997) A pivotal Archaea group. Nature (Lond) 385:780
12. DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
13. DeLong EF, Wickham GS, Pace NR (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363
14. DeLong EF, Wu KY, Prezelin BB, Jovine RVM (1994) Archaean Antarctic marine environments. Nature (Lond) 371:695
15. DeSoete G (1983) A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48:621-626
16. Felsenstein J (1981) Evolutionary trees form DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
17. Harmsen HJM, Prieur D, Jeanthon C (1997) Group-specific 16S rRNA-targeted oligonucleotide probes to identify thermophilic bacteria in marine hydrothermal vents. Appl Environ Microbiol 63:4061-4068
18. Hershberger KL, Barns SM, Dawson SC, Pace NR (1996) Wide diversity of Crenarchaeota. Nature (Lond) 384:420-419
19. Huber R, Wilharm T, Huber D, Trincone A, Burggraf S, Koenig H, Rachel R, Rockinger I, Fricke H, Stetter KO (1992) Aquifex pyrophilus, gen. nov. sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidizing bacteria. Syst Appl Microbiol 15:340-351
20. Huber R, Eder W, Heldwein S, Wanner G, Huber H, Rachel R, Stetter KO (1998) Thermocrinis ruber gen. nov., sp. nov., a pink-filament-forming hyperthermophilic bacterium isolated from Yellowstone National Park. Appl Environ Microbiol 64:3576-3583
21. Hugenholtz P, Pitulle C, Hershberger KL, Pace NR (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180:366-376
22. Kawasumi T, Igarashi Y, Kodama T, Minoda Y (1984) Hydrogenobacter thermophilus gen. nov. sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium. Int J Syst Bacteriol 34:5-10
23. Kristjansson JK, Ingason A, Alfredsson GA (1985) Isolation of thermophilic obligately autotrophic hydrogen-oxidizing bacteria, similar to Hydrogenobacter thermophilus, from Icelandic hot springs. Arch Microbiol 140:321-325
24. Madigan MT, Takigiku R, Lee RG, Gest H, Hayes JM (1989) Carbon isotope fractionation by thermophilic phototrophic sulfur bacteria: evidence for autotrophic growth in natural populations. Appl Environ Microbiol 55:639-644
25. Maidak BL, Cole JR, Charles T, Parker J, Garrity GM, Larsen N, Li B, Lilburn TG, McCaughey MJ, Olsen GJ, Overbeck R, Pramanik S, Schmidt TM, Tiedje JM, Woese CR (1999) A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res 27:171-173
26. Moore LR, Rocap G, Chisholm SW (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature (Lond) 393:464-467
27. Pace NR, Stahl DA, Lane DJ, Olsen GJ (1986) The analysis of natural microbial populations by ribosomal RNA sequences. In: Marshall KC (ed) Current microbial ecology. Plenum Press, New York, pp. 1-55
28. Pierson BK, Olson JM (1989) Evolution of photosynthesis in anoxygenic photosynthetic procaryotes. In: Cohen Y, Rosenberg E (eds) Microbial mats. American Society for Microbiology, Washington. DC
29. Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25:943-948
30. Reysenbach A-L, Pace NR (1995) Reliable amplification of hyperthermophilic archaeal 16S rRNA genes by PCR. In: Robb FT, Place AR (eds) Thermophiles. Cold Spring Harbor Press, New York, pp. 101-106
31. Reysenbach A-L, Wickham GS, Pace NR (1994) Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring. Yellowstone National Park. Appl Environ Microbiol 60:2113-2119
32. Sekar V (1987) A rapid screening procedure for the identification of recombinant bacterial clones. BioTechniques 5:11-13
33. Shima S, Suzuki K-I (1993) Hydrogenobacter acidophilus sp. nov., a thermoacidophilic, aerobic, hydrogen-oxidizing, bacterium requiring elemental sulfur for growth. Int J Syst Bacteriol 43:703-708
34. Slobodkin A, Reysenbach A-L, Strutz N, Dreier M, Wiegel J (1997) Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring. Int J Syst Bacteriol 47:541-547
35. Ward DM, Weller R, Bateson MM (1990) 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol Rev 6:105-115
36. Ward DM, Bateson MM, Weller R, Ruff-Roberts AL (1992) Ribosomal RNA analysis in microorganisms as they occur in nature. Adv Microb Ecol 12:219-286
37. Yamamoto H, Hiraishi A, Kato K, Chiura HX, Maki Y, Shimizu A (1998) Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan. Appl Environ Microbiol 64:1680-1687