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Volumn 65, Issue 4, 1999, Pages 1721-1730

Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; COMMUNITY STRUCTURE; GENETIC ANALYSIS; MICROBIAL COMMUNITY; PASTURE; SPECIES DIVERSITY;

EID: 0032916067     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.4.1721-1730.1999     Document Type: Article
Times cited : (354)

References (45)
  • 1
    • 51249174563 scopus 로고
    • Response of microbial populations to environmental disturbance
    • Atlas, R. M., A. Horowitz, M. Krichevsky, and A. K. Bej. 1991. Response of microbial populations to environmental disturbance. Microb. Ecol. 22:249-256.
    • (1991) Microb. Ecol. , vol.22 , pp. 249-256
    • Atlas, R.M.1    Horowitz, A.2    Krichevsky, M.3    Bej, A.K.4
  • 2
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • Bond, P. L., P. Hugenholtz, J. Keller, and L. L. Blackall. 1995. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl. Environ. Microbiol. 61:1910-1916.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 3
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J., and E. W. Triplett. 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 5
    • 0028163244 scopus 로고
    • A new relationship for rarefaction
    • Brewer, A., and M. Williamson. 1994. A new relationship for rarefaction. Biodiv. Conserv. 3:373-379.
    • (1994) Biodiv. Conserv. , vol.3 , pp. 373-379
    • Brewer, A.1    Williamson, M.2
  • 6
    • 0030849809 scopus 로고    scopus 로고
    • Direct extraction of microbial community DNA from humified upland soils
    • Clegg, C. D., K. Ritz, and B. S. Griffiths. 1997. Direct extraction of microbial community DNA from humified upland soils. Lett. Appl. Microbiol. 25:30-33.
    • (1997) Lett. Appl. Microbiol. , vol.25 , pp. 30-33
    • Clegg, C.D.1    Ritz, K.2    Griffiths, B.S.3
  • 7
    • 0025895588 scopus 로고
    • The linear PCR reaction: A simple and robust method for sequencing amplified rRNA genes
    • Embley, T. M. 1991. The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes. Lett. Appl. Microbiol. 13:171-174.
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 171-174
    • Embley, T.M.1
  • 8
    • 0003039028 scopus 로고    scopus 로고
    • The use of 16S rRNA sequences in microbial ecology
    • W. Pickup and J. R. Saunders (ed.), Ellis-Horwood, London, United Kingdom
    • Embley, T. M., and E. Stackebrandt. 1996. The use of 16S rRNA sequences in microbial ecology, p. 39-62. In W. Pickup and J. R. Saunders (ed.), Molecular approaches in environmental microbiology. Ellis-Horwood, London, United Kingdom.
    • (1996) Molecular Approaches in Environmental Microbiology , pp. 39-62
    • Embley, T.M.1    Stackebrandt, E.2
  • 10
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
    • Felske, A., A. Wolterink, R. Van Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64:871-879.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    Akkermans, A.D.L.4
  • 11
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
    • Felske, A., H. Rheims, A. Wolterink, E. Stackebrandt, and A. D. L. Akkermans. 1997. Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143: 2983-2989.
    • (1997) Microbiology , vol.143 , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.L.5
  • 13
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I. J. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40:237-262.
    • (1953) Biometrika , vol.40 , pp. 237-262
    • Good, I.J.1
  • 14
    • 0031982528 scopus 로고    scopus 로고
    • Microbial evolution, diversity, and ecology: A decade of ribosomal rRNA analysis of uncultivated microorganisms
    • Head, I. M., J. R. Saunders, and R. W. Pickup. 1998. Microbial evolution, diversity, and ecology: a decade of ribosomal rRNA analysis of uncultivated microorganisms. Microb. Ecol. 35:1-21.
    • (1998) Microb. Ecol. , vol.35 , pp. 1-21
    • Head, I.M.1    Saunders, J.R.2    Pickup, R.W.3
  • 15
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (ed.), Academic Press, New York, N.Y.
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, New York, N.Y.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 16
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 17
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W., and E. Stackebrandt. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 19
    • 0031956351 scopus 로고    scopus 로고
    • Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA
    • Marilley, L., G. Vogt, M. Blanc, and M. Aragno. 1998. Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA. Plant Soil 198: 219-224.
    • (1998) Plant Soil , vol.198 , pp. 219-224
    • Marilley, L.1    Vogt, G.2    Blanc, M.3    Aragno, M.4
  • 20
    • 0028240270 scopus 로고
    • Molecular analysis of enrichment cultures of marine ammonia oxidisers
    • McCaig, A. E., T. M. Embley, and J. I. Prosser. 1994. Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol. Lett. 120:363-368.
    • (1994) FEMS Microbiol. Lett. , vol.120 , pp. 363-368
    • McCaig, A.E.1    Embley, T.M.2    Prosser, J.I.3
  • 21
    • 0030298396 scopus 로고    scopus 로고
    • Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques
    • McDonald, I. R., G. H. Hall, R. W. Pickup, and J. C. Murrell. 1996. Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques. FEMS Microbiol. Ecol. 21: 197-211.
    • (1996) FEMS Microbiol. Ecol. , vol.21 , pp. 197-211
    • McDonald, I.R.1    Hall, G.H.2    Pickup, R.W.3    Murrell, J.C.4
  • 22
    • 0030483312 scopus 로고    scopus 로고
    • Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil
    • McVeigh, H. P., J. Munro, and T. M. Embley. 1996. Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil. J. Ind. Microbiol. 17:197-204.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 197-204
    • McVeigh, H.P.1    Munro, J.2    Embley, T.M.3
  • 23
    • 0030827072 scopus 로고    scopus 로고
    • Incubation time and media requirements of culturable bacteria from different phylogenetic groups
    • Mitsui, H., K. Gorlach, H. Lee, R. Hattori, and T. Hattori. 1997. Incubation time and media requirements of culturable bacteria from different phylogenetic groups. J. Microbiol. Methods 30:103-110.
    • (1997) J. Microbiol. Methods , vol.30 , pp. 103-110
    • Mitsui, H.1    Gorlach, K.2    Lee, H.3    Hattori, R.4    Hattori, T.5
  • 24
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1995. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61:1555-1562.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 25
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T. D., T. B. Britschgi, R. L. Krest, and S. J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40:148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 27
    • 0342868796 scopus 로고    scopus 로고
    • Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with smail-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
    • Nüsslein, K., and J. M. Tiedje. 1998. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with smail-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl. Environ. Microbiol. 64:1283-1289.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1283-1289
    • Nüsslein, K.1    Tiedje, J.M.2
  • 28
    • 0002868950 scopus 로고
    • Principles and concepts pertaining to organization at the community level
    • Saunders College Publishing, Philadelphia, Pa.
    • Odum, E. P. 1971. Principles and concepts pertaining to organization at the community level, p. 140-161. In Fundamentals of ecology. Saunders College Publishing, Philadelphia, Pa.
    • (1971) Fundamentals of Ecology , pp. 140-161
    • Odum, E.P.1
  • 29
    • 0029853626 scopus 로고    scopus 로고
    • Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations
    • Rheims, H., C. Spröer, F. A. Rainey, and E. Stackebrandt. 1996. Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology 142:2863-2870.
    • (1996) Microbiology , vol.142 , pp. 2863-2870
    • Rheims, H.1    Spröer, C.2    Rainey, F.A.3    Stackebrandt, E.4
  • 30
    • 0030483155 scopus 로고    scopus 로고
    • A molecular approach to search for diversity among bacteria in the environment
    • Rheims, H., F. A. Rainey, and E. Stackebrandt. 1996. A molecular approach to search for diversity among bacteria in the environment. J. Ind. Microbiol. 17:159-169.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 159-169
    • Rheims, H.1    Rainey, F.A.2    Stackebrandt, E.3
  • 31
    • 0004123335 scopus 로고
    • Cambridge University Press, Cambridge, United Kingdom
    • Rodwell, J. S. 1992. British plant communities, vol. 3. Cambridge University Press, Cambridge, United Kingdom.
    • (1992) British Plant Communities , vol.3
    • Rodwell, J.S.1
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0019997248 scopus 로고
    • The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris
    • Seewaldt, E., K. H. Schleifer, E. Bock, and E. Stackebrandt. 1982. The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris. Arch. Microbiol. 131:287-290.
    • (1982) Arch. Microbiol. , vol.131 , pp. 287-290
    • Seewaldt, E.1    Schleifer, K.H.2    Bock, E.3    Stackebrandt, E.4
  • 34
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 35
    • 84963626037 scopus 로고
    • The phylogenetic status of Pelobacter acidigallici, Pelobacter venetianus and Pelobacter carbinolicus
    • Stackebrandt, E., U. Wehmeyer, and B. Schink. 1989. The phylogenetic status of Pelobacter acidigallici, Pelobacter venetianus and Pelobacter carbinolicus. Syst. Appl. Microbiol. 11:257-260.
    • (1989) Syst. Appl. Microbiol. , vol.11 , pp. 257-260
    • Stackebrandt, E.1    Wehmeyer, U.2    Schink, B.3
  • 36
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt, E., W. Liesack, and B. M. Goebel. 1993. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7:232-236.
    • (1993) FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 38
    • 0030497690 scopus 로고    scopus 로고
    • Total bacterial diversity in soil and sediment communities: A review
    • Torsrik, V., R. Sorheim, and J. Goksoyr. 1996. Total bacterial diversity in soil and sediment communities: a review. J. Ind. Microbiol. 17:170-178.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 170-178
    • Torsrik, V.1    Sorheim, R.2    Goksoyr, J.3
  • 40
  • 41
    • 0029584840 scopus 로고
    • Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria
    • Ward-Rainey, N., F. A. Rainey, H. Schlesner, and E. Stackebrandl. 1995. Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria. Microbiology 141:3247-3250.
    • (1995) Microbiology , vol.141 , pp. 3247-3250
    • Ward-Rainey, N.1    Rainey, F.A.2    Schlesner, H.3    Stackebrandl, E.4
  • 42
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode, F. V., U. B. Goebel, and E. Suckebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Wintzingerode, F.V.1    Goebel, U.B.2    Suckebrandt, E.3
  • 45
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
    • (1997) Microbiology , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


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