The in vivo functions of ATP-dependent chromatin-remodelling factors

Nature Reviews Molecular Cell Biology

Volumn 3, Issue 6, 2002, Pages 422-429

  Tsukiyama, Toshio ^a  

^a USA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; DNA; PROTEIN;

CHROMATIN; CHROMATIN REMODELLING; COMPLEX FORMATION; DNA DETERMINATION; DNA METHYLATION; DNA STRUCTURE; HUMAN; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; REGULATORY MECHANISM; REVIEW;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; ANIMALS; CHROMATIN; SACCHAROMYCES CEREVISIAE;

EID: 0036056999     PISSN: 14710072     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrm828     Document Type: Review

References (112)

1. Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
2. ATP-dependent chromatin-remodeling complexes
3. ATP-dependent chromatin remodeling activities
4. Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors
5. Five SWI genes are required for expression of the HO gene in yeast
6. Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae
7. Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection
8. Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure
9. Dissecting the regulatory circuitry of a eukaryotic genome
10. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
11. Purification and characterization of mSin3A-containing Brg-1 and hBrm chromatin remodeling complexes
12. Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1)
13. Global role for chromatin remodeling enzymes in mitotic gene expression
14. Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression
15. The nucleosome remodeling complex, Snf/Swi, is required for the maintenance of transcription in vivo and is partially redundant with the histone acetyltransferase, Gcn5
16. Continuous and widespread roles for the Swi-Snf complex in transcription
17. RSC, an essential, abundant chromatin-remodeling complex
18. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex
19. The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays
20. Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays
21. An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family
22. The Saccharomyces cerevisiae NPS1 gene, a novel CDC gene which encodes a 160 kDa nuclear protein involved in G2 phase control
23. Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains
24. Transcriptional repression of the yeast CHA1 gene requires the chromatin-remodeling complex RSC
25. A Rsc3/Rsc 30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control
26. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
27. The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress
28. Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex
29. Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF
30. Altered control of cellular proliferation in the absence of mammalian brahma (SNF2α)
31. A Brg 1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes
32. Disruption of Ini1 leads to peri-implantation lethality and tumorigenesis in mice
33. The murine SNF5/INI1 chromatin remodeling factor is essential for embryonic development and tumor suppression
34. The retinoblastoma protein and BRG 1 form a complex and cooperate to induce cell cycle arrest
35. BRCA1 is associated with a human SWI/SNF-related complex: Linking chromatin remodeling to breast cancer
36. BRG1, a component of the SWI-SNF complex, Is mutated in multiple human tumor cell lines
37. Frequent deletion of hSNF5/INI1, a component of the SWI/SNF complex, in chronic myeloid leukemia
38. Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer
39. hSNF5/INI1 inactivation is mainly associated with homozygous deletions and mitotic recombinations in rhabdoid tumors
40. A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF In vitro
41. Purification and biochemical heterogeneity of the mammalian SWI-SNF complex
42. Diversity and specialization of mammalian SWI/SNF complexes
43. Mammalian SWI/SNF complexes promote MyoD-mediated muscle differentiation
44. Dosage-dependent modifiers of polycomb and antennapedia mutations in Drosophila
45. The Drosophila trithorax group proteins BRM, ASH 1 and ASH2 are subunits of distinct protein complexes
46. ATP-driven chromatin remodeling activity and histone acetyltransferases act sequentially during transactivation by RAR/RXR in vitro
47. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter
48. Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes
49. Structure and function of a human TAF250 double bromodomain module
50. Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter
51. Cell cycle-regulated histone acetylation required for expression of the yeast HO gene
52. Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2
53. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor
54. Purification and properties of an ATP-dependent nucleosome remodeling factor
55. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
56. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II
57. The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo
58. Dual functions of largest NURF subunit NURF301 in nucleosome sliding and transcription factor interactions
59. Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling
60. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly
61. Capturing novel mouse genes encoding chromosomal and other nuclear proteins
62. Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevislae
63. The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
64. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
65. Repression by Ume6 involves recruitment of a complex containing Sin3 compressor and Rpd3 histone deacetylase to target promoters
66. Targeted recruitment of the Sic3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo
67. Widespread collaboration of Isw2 and sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
68. Chromatin remodelling at the PHO8 promote requires SWI-SNF and SAGA at a step subsequent to activator binding
69. In vivo chromatin remodeling by yeast ISWI homologs Isw1p Isw2p
70. Functional discovery via a compendium of expression profiles
71. The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities
72. NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities
73. Chromatin deacetylation by an ATP dependent nucleosome remodelling complex
74. Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
75. Analysis of the NuRD subunits reveals histone deacetylase core complex and a connection with DNA methylation
76. Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
77. MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex
78. Transcriptional repression by Drosophila methyl-CpG-binding proteins
79. The MeCP1 complex represses transcription through preferential binding, remodeling, deacetylating methylated nucleosomes
80. Repression by Ikaros and Alolos is mediated through histone deacetylase complexes
81. Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes
82. dMi-2, a hunchback-interacting protein functions in polycomb repression
83. Tramtrack69 interacts with the subunit of the Drosophila NuRD chromatin remodelling complex
84. Specificity of the HP1 chromodomain the methylated N-terminus of histone H3
85. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromodomain
86. CHD1 is concentrated in interbands and puffed regions of Drosophila polytene chromosomes
87. Correlation between histone lysine methylation and developmental changes at the chicken β-globin locus
88. Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena
89. Transitions in distinct histone H3 methylation patterns at the heterochroma domain boundaries
90. The chromodomain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor
91. Characterization of the CHD family of proteins
92. The production of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex
93. A chromatin modelling complex involved in transcription and DNA processing
94. Multiple links between the NuA 4 histone acetytransferase complex and epigenetic control of transcription
95. Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after lymphocyte receptor signaling
96. Phosphosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex
97. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer
98. Nucleosome mobilization catalysed by the yeast SWI/SNF complex
99. ATP-dependent histone octamer sliding mediated by the romatin remodeling complex NURF
100. NoRC - A novel member of mammalian ISWI-containing chromatin remodeling machines
101. Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state
102. RSC unravels the nucleosome
103. Purification and characterization of a human factor that assembles and remodels chromatin
104. ATP-facilitated chromatin assembly with a nucleoplasminlike protein from Drosophila melanogaster
105. Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III
106. Analytical ultracentrifugation and agarose gel electrophoresis as tools for studying chromatin folding in solution
107. Core histone tail domains mediate oligonucleosome folding and nuoleosomal DNA organization through distinct molecular mechanisms
108. Maintenance of genomic methylation requires a SWI2/SNF2-like protein
109. Lsh, a member of the SNF2 family, is required for genome-wide methylation
110. Generation of superhelical torsion by ATP-dependent chromatin remodeling activities
111. The Drosophila brahma complex is an essential coactivator for the trithorax group protein zeste
112. Selectivity of chromatin-remodelling cofactors for ligand-activated transcription