Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter

Cell

Volumn 97, Issue 3, 1999, Pages 299-311

  Cosma, Maria Pia ^a,b   Tanaka, Tomoyuki ^a   Nasmyth, Kim ^a  

^a RESEARCH INSTITUTE OF MOLECULAR PATHOLOGY   (Austria)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE ACETYLTRANSFERASE; TRANSCRIPTION FACTOR;

ANAPHASE; ARTICLE; CELL CYCLE; CHROMATIN STRUCTURE; ENZYME ACTIVITY; EUKARYOTE; GENE ACTIVATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; TRANSCRIPTION REGULATION;

EID: 0033617334     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80740-0     Document Type: Article

References (68)

1. Andrews, B.J., and Herskowitz, I. (1989). The yeast SW14 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription. Nature 342, 830-833.
2. Berger, S.L., Pina, B., Silverman, N., Marcus, G.A., Agapite, J., Regier, J.L, Triezenberg, S.J., and Guarente, L. (1992). Genetic isolation of ADA2: a potential transcriptional adaptor required for function of certain acidic activation domains. Cell 70, 251-265.
3. Bertrand, E., Chartrand, P., Schaefer, M., Shenoy, S.M., Singer, R.H., and Long, R.M. (1998). Localization of ASH1 mRNA particles in living yeast. Mol. Cell 2, 437-445.
4. Bobola, N., Jansen, R.P., Shin, T.H., and Nasmyth, K. (1996). Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell 84, 699-709.
5. Breeden, L., and Mikesell, G.E. (1991). Cell cycle-specific expression of the SWI4 transcription factor is required for the cell cycle regulation of HO transcription. Genes Dev. 5, 1183-1190.
6. Breeden, L., and Nasmyth, K. (1987). Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48, 389-397.
7. Brownell, J.E., and Allis, C.D. (1996). Special HATs for special occasions: linking histone acetylation to chromatin assembly and gene activation. Curr. Opin. Genet. Dev. 6, 176-184.
8. Brownell, J.E., Zhou, J., Ranalli, T., Kobayashi, R., Edmondson, D.G., Roth, S.Y., and Allis, C.D. (1996). Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84, 843-851.
9. Burns, L.G., and Peterson, C.L. (1997). The yeast SWI-SNF complex facilitates binding of a transcriptional activator to nucleosomal sites in vivo. Mol. Cell Biol. 17, 4811-4819.
10. Ciosk, R., Zachariae, W., Michaelis, C., Shevchenko, A., Mann, M., and Nasmyth, K. (1998). An ESP1/PDS1 complex regulates loss of sister chromatid cohesion at the metaphase to anaphase transition in yeast. Cell 93, 1067-1076.
11. Cohen-Fix, O., Peters, J.M., Kirschner, M.W., and Koshland, D. (1996). Anaphase initiation in Saccharomyces cerevisiae is controlled by the APC-dependent degradation of the anaphase inhibitor Pds1p. Genes Dev. 10, 3081-3093.
12. Cote, J., Quinn, J., Workman, J.L., and Peterson, C.L. (1994). Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265, 53-60.
13. Dirick, L., Moll, T., Auer, H., and Nasmyth, K. (1992). A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast. Nature 357, 508-513.
14. Georgakopoulos, T., and Thireos, G. (1992). Two distinct yeast transcriptional activators require the function of the GCN5 protein to promote normal levels of transcription. EMBO J. 11, 4145-4152.
15. Gonzalez, I., Buonomo, S.B.C., Nasmyth, K., and von Ahsen, U. (1999). ASH1 mRNA localization in yeast involves multiple secondary structural elements and Ash1 protein translation. Curr. Biol., in press.
16. Grant, P.A., Duggan, L., Cote, J., Roberts, S.M., Brownell, J.E., Candau, R., Ohba, R., Owen-Hughes, T., Allis, C.D., Winston, F., Berger, S.L., and Workman, J.L. (1997). Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev. 11, 1640-1650.
17. Grant, P.A., Sterner, D.E., Duggan, L.J., Workman, J.L., and Berger, S.L. (1998). The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes. Trends Cell Biol. 8, 193-197.
18. Hecht, A., Strahl-Bolsinger, S., and Grunstein, M. (1996). Spreading of transcriptional repressor SIR3 from telomeric heterochromatin. Nature 383, 92-96.
19. Hirschhorn, J.N., Brown, S.A., Clark, C.D., and Winston, F. (1992). Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev. 6, 2288-2298.
20. Holstege, F.C., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S., and Young, R.A. (1998). Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95, 717-728.
21. Imbalzano, A.N., Kwon, H., Green, M.R., and Kingston, R.E. (1994). Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370, 481-485.
22. Jansen, R.P., Dowzer, C., Michaelis, C., Galova, M., and Nasmyth, K. (1996). Mother cell-specific HO expression in budding yeast depends on the unconventional myosin Myo4p and other cytoplasmic proteins. Cell 84, 687-697.
23. Kadonaga, J.T. (1998). Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell 92, 307-313.
24. Kadosh, D., and Struhl, K. (1997). Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell 89, 365-371.
25. Kadosh, D., and Struhl, K. (1998). Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell Biol. 18, 5121-5127.
26. Kingston, R.E., Bunker, C.A., and Imbalzano, A.N. (1996). Repression and activation by multiprotein complexes that alter chromatin structure. Genes Dev. 10, 905-920.
27. Koch, C., and Nasmyth, K. (1994). Cell cycle regulated transcription in yeast. Curr. Opin. Cell Biol. 6, 451-459.
28. Kruger, W., and Herskowitz, I. (1991). A negative regulator of HO transcription, SIN1 (SPT2), is a nonspecific DNA-binding protein related to HMG1. Mol. Cell Biol. 11, 4135-4146.
29. Kruger, W., Peterson, C.L., Sil, A., Coburn, C., Arents, G., Moudrianakis, E.N., and Herskowitz, I. (1995). Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription. Genes Dev. 9, 2770-2779.
30. Kwon, H., Imbalzano, A.N., Khavari, P.A., Kingston, R.E., and Green, M.R. (1994). Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex. Nature 370, 477-481.
31. Lim, H.H., Goh, P.Y., and Surana, U. (1998). Cdc20 is essential for the cyclosome-mediated proteolysis of both Pds1 and CIb2 during M phase in budding yeast. Curr. Biol. 8, 231-234.
32. Long, R.M., Singer, R.H., Meng, X., Gonzalez, I., Nasmyth, K., and Jansen, R.P. (1997). Mating type switching in yeast controlled by asymmetric localization of ASH1 mRNA. Science 277, 383-387.
33. Marcus, G.A., Silverman, N., Berger, S.L., Horiuchi, J., and Guarente, L. (1994). Functional similarity and physical association between GCN5 and ADA2: putative transcriptional adaptors. EMBO J. 13, 4807-4815.
34. Mizzen, C.A., and Allis, C.D. (1998). Linking histone acetylation to transcriptional regulation. Cell Mol. Life Sci. 54, 6-20.
35. Moll, T., Tebb, G., Surana, U., Robitsch, H., and Nasmyth, K. (1991). The role of phosphorylation and the CDC28 protein kinase in cell cycle-regulated nuclear import of the S. cerevisiae transcription factor SWI5. Cell 66, 743-758.
36. Münchow, S., Sauter, C., and Jansen, R.-P. (1999). Association of the class V myosin Myo4p with a localized messenger RNA in budding yeast depends on She proteins. J. Cell Sci. 112, in press.
37. Nasmyth, K.A. (1982). Molecular genetics of yeast mating type. Annu. Rev. Genet. 16, 439-500.
38. Nasmyth, K. (1983). Molecular analysis of a cell lineage. Nature 302, 670-676.
39. Nasmyth, K. (1985). A repetitive DNA sequence that confers cell-cycle START (CDC28)-dependent transcription of the HO gene in yeast. Cell 42, 225-235.
40. Nasmyth, K. (1987). The determination of mother cell-specific mating type switching in yeast by a specific regulator of HO transcription. EMBO J. 6, 243-248.
41. Nasmyth, K. (1993). Regulating the HO endonuclease in yeast. Curr. Opin. Genet. Dev. 3, 286-294.
42. Oshima, Y., and Takano, I. (1971). Mating types in Saccharomyces: their convertibility and homothallism. Genetics 67, 327-335.
43. Owen-Hughes, T., Utley, R.T., Cote, J., Peterson, C.L., and Workman, J.L. (1996). Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273, 513-516.
44. Pazin, M.J., and Kadonaga, J.T. (1997). SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell 88, 737-740.
45. Perez-Martin, J., and Johnson, A.D. (1998). Mutations in chromatin components suppress a defect of Gcn5 protein in Saccharomyces cerevisiae. Mol. Cell Biol. 18, 1049-1054.
46. Peterson, C.L. (1996). Multiple Switches to turn on chromatin? Curr. Opin. Genet. Dev. 6, 171-175.
47. Pollard, K.J., and Peterson, C.L. (1997). Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression. Mol. Cell Biol. 17, 6212-6222.
48. Pollard, K.J., and Peterson, C.L. (1998). Chromatin remodeling: a marriage between two families? Bioessays 20, 771-780.
49. Primig, M., Sockanathan, S., Auer, H., and Nasmyth, K. (1992). Anatomy of a transcription factor important for the start of the cell cycle in Saccharomyces cerevisiae. Nature 358, 593-597.
50. Pugh, B.F. (1996). Mechanisms of transcription complex assembly. Curr. Opin. Cell Biol. 8, 303-311.
51. Ruiz-Garcia, A.B., Sendra, R., Pamblanco, M., and Tordera, V. (1997). Gcn5p is involved in the acetylation of histone H3 in nucleosomes. FEBS Lett. 403, 186-190.
52. Rundlett, S.E., Carmen, A.A., Suka, N., Turner, B.M., and Grunstein, M. (1998). Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392, 831-835.
53. Schnitzler, G., Sif, S., and Kingston, R.E. (1998). Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state. Cell 94, 17-27.
54. Shirayama, M., Zachariae, W., Ciosk, R., and Nasmyth, K. (1998). The Polo-like kinase Cdc5p and the WD-repeat protein Cdc20p/fizzy are regulators and substrates of the anaphase promoting complex in Saccharomyces cerevisiae. EMBO J. 17, 1336-1349.
55. Sil, A., and Herskowitz, I. (1996). Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene. Cell 84, 711-722.
56. Stern, M., Jensen, R., and Herskowitz, I. (1984). Five SWI genes are required for expression of the HO gene in yeast. J. Mol. Biol. 178, 853-868.
57. Sterner, D.E., Grant, P.A., Roberts, S.M., Duggan, L.J., Belotserkovskaya, R., Pacella, L.A., Winston, F., Workman, J.L., and Berger, S.L. (1999). Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Mol. Cell Biol. 19, 86-98.
58. Stillman, D.J., Bankier, A.T., Seddon, A., Groenhout, E.G., and Nasmyth, K.A. (1988). Characterization of a transcription factor involved in mother cell specific transcription of the yeast HO gene. EMBO J. 7, 485-494.
59. Stillman, D.J., Dorland, S., and Yu, Y. (1994). Epistasis analysis of suppressor mutations that allow HO expression in the absence of the yeast SW15 transcriptional activator. Genetics 136, 781-788.
60. Strathern, J.N., Klar, A.J., Hicks, J.B., Abraham, J.A., Ivy, J.M., Nasmyth, K.A., and McGill, C. (1982). Homothallic switching of yeast mating type cassettes is initiated by a double-stranded cut in the MAT locus. Cell 31, 183-192.
61. Struhl, K. (1998). Histone acetylation and transcriptional regulatory mechanisms. Genes Dev. 12, 599-606.
62. Taba, M.R., Muroff, I., Lydall, D., Tebb, G., and Nasmyth, K. (1991). Changes in a SWI4,6-DNA-binding complex occur at the time of HO gene activation in yeast. Genes Dev. 5, 2000-2013.
63. Takizawa, P.A., Sil, A., Swedlow, J.R., Herskowitz, I., and Vale, R.D. (1997). Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast. Nature 389, 90-93.
64. Tanaka, T., Knapp, D., and Nasmyth, K. (1997). Loading of an Mcm protein onto DNA replication origins is regulated by Cdc6p and CDKs. Cell 90, 649-660.
65. Tebb, G., Moll, T., Dowzer, C., and Nasmyth, K. (1993). SWI5 instability may be necessary but is not sufficient for asymmetric HO expression in yeast. Genes Dev. 7, 517-528.
66. Visintin, R., Prinz, S., and Amon, A. (1997). CDC20 and CDH1: a family of substrate-specific activators of APC-dependent proteolysis. Science 278, 460-463.
67. Visintin, R., Craig, K., Hwang, E.S., Prinz, S., Tyers, M., and Amon, A. (1998). The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation. Mol. Cell 2, 709-718.
68. Winston, F., and Carlson, M. (1992). Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet. 8, 387-391.