ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

Cell

Volumn 90, Issue 1, 1997, Pages 145-155

  Ito, Takashi ^a   Bulger, Michael ^a   Pazin, Michael J ^a   Kobayashi, Ryuji ^b   Kadonaga, James T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Simons Center for Quantitative Biology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; CELL PROLIFERATION; CHROMATIN; DEACYLATION; DNA REPLICATION; DROSOPHILA; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN PURIFICATION; XENOPUS;

ANIMALIA;

EID: 0031444148     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80321-9     Document Type: Article

References (51)

1. Armstrong, J.A., and Emerson, B.M. (1996). NF-E2 disrupts chromatin structure at human β-globin locus control region hypersensitive site 2 in vitro. Mol. Cell. Biol. 16, 5634-5644.
2. Banerjee, S., and Cantor, C.R. (1990). Nucleosome assembly of simian virus 40 DNA in a mammalian cell extract. Mol. Cell. Biol. 10, 2863-2873.
3. Becker, P.B., and Wu, C. (1992). Cell-free system for assembly of transcriptionally repressed chromatin from Drosophila embryos. Mol. Cell. Biol. 12, 2241-2249.
4. Blank, T.A., and Becker, P.B. (1995). Electrostatic mechanism of nucleosome spacing. J. Mol. Biol. 252, 305-313.
5. Bulger, M., Ito, T., Kamakaka, R.T., and Kadonaga, J.T. (1995). Assembly of regularly-spaced nucleosome arrays by dCAF-1 and a 56kDa histone-binding protein. Proc. Natl. Acad. Sci. USA 92, 11726-11730.
6. Cairns, B.R., Lorch, Y., Li, Y., Zhang, M., Lacomis, L., Erdjument-Bromage, H., Tempst, P., Du, J., Laurent, B., and Kornberg, R.D. (1996). RSC, an essential, abundant chromatin-remodeling complex. Cell 87, 1249-1260.
7. Camerini-Otero, R.D., Sollner-Webb, B., and Felsenfeld, G. (1976). The organization of histones and DNA in chromatin: evidence for an arginine-rich histone kernel. Cell 8, 333-347.
8. Chasman, D.I., Leatherwood, J., Carey, M., Ptashne, M., and Kornberg, R.D. (1989). Activation of yeast polymerase II transcription by herpes VP16 and GAL4 derivatives in vitro. Mol. Cell. Biol. 9, 4746-4749.
9. Eisen, J.A., Sweder, K.S., and Hanawalt, P.C. (1995). Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23, 2715-2723.
10. Elfring, L.K., Deuring, R., McCallum, C.M., Peterson, C.L., and Tamkun, J.W. (1994). Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14, 2225-2234.
11. Gaillard, P.-H.L., Martini, E.M.-D., Kaufman, P.D., Stillman, B., Moustacchi, E., and Almouzni, G. (1996). Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell 86, 887-896.
12. Germond, J.-E., Bellard, M., Oudet, P., and Chambon, P. (1976). Stability of nucleosomes in native and reconstituted chromatins. Nucleic Acids Res. 3, 3173-3192.
13. Glikin, G.C., Ruberti, I., and Worcel, A. (1984). Chromatin assembly in Xenopus oocytes: in vitro studies. Cell 37, 33-41.
14. Grunstein, M. (1997). Roles of histone acetylation in nucleosome assembly, heterochromatin and gene activation. Nature, in press.
15. Ishimi, Y., Hirosumi, J., Sato, W., Sugasawa, K., Yokota, S., Hanaoka, F., and Yamada, M. (1984). Purification and initial characterization of a protein which facilitates assembly of nucleosome-like structure from mammalian cells. Eur. J. Biochem. 142, 431-439.
16. Ishimi, Y., Kojima, M., Yamada, M., and Hanaoka, F. (1987). Binding mode of nucleosome-assembly protein (AP-I) and histones. Eur. J. Biochem. 162, 19-24.
17. Ito, T., Bulger, M., Kobayashi, R., and Kadonaga, J.T. (1996a). Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly-spaced nucleosomal arrays. Mol. Cell. Biol. 16, 3112-3124.
18. Ito, T., Tyler, J.K., Bulger, M., Kobayashi, R., and Kadonaga, J.T. (1996b). ATP-facilitated chromatin assembly with a nucleoplasmin-like protein from Drosophila melanogaster. J. Biol. Chem. 277, 25041-25048.
19. Jeong, S.W., Lauderdale, J.D., and Stein, A. (1991). Chromatin assembly on plasmid DNA in vitro. Apparent spreading of nucleosome alignment from one region of pBR327 by histone H5. J. Mol. Biol. 222, 1131-1147.
20. Kamakaka, R.T., Bulger, M., and Kadonaga, J.T. (1993). Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes Dev. 7, 1779-1795.
21. Kamakaka, R.T., Bulger, M., Kaufman, P.D., Stillman, B., and Kadonaga, J.T. (1996). Post-replicative chromatin assembly by Drosophila and human chromatin assembly factor-1. Mol. Cell. Biol. 16, 810-817.
22. Kaufman, P.D., Kobayashi, R., Kessler, N., and Stillman, B. (1995). The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. Cell 81, 1105-1114.
23. Kaufman, P.D. (1996). Nucleosome assembly: the CAF and the HAT. Curr. Opin. Cell Biol. 8, 369-373.
24. Kaufman, P.D., Kobayashi, R., and Stillman, B. (1997). Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-1. Genes Dev. 11, 345-357.
25. Kingston, R.E., Bunker, C.A., and Imbalzano, A.N. (1996). Repression and activation by multiprotein complexes that alter chromatin structure. Genes Dev. 10, 905-920.
26. Kornberg, R.D., and Lorch, Y. (1995). Interplay between chromatin structure and transcription. Curr. Opin. Cell Biol. 7, 371-375.
27. Krude, T. (1995). Nucleosome assembly during DNA replication. Curr. Biol. 5, 1232-1234.
28. Pazin, M.J., Kamakaka, R.T., and Kadonaga, J.T. (1994). ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates. Science 266, 2007-2011.
29. Pazin, M.J., Sheridan, P.L., Cannon, K., Cao, Z., Keck, J.G., Kadonaga, J.T., and Jones, K.A. (1996). NF-kB-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes Dev. 10, 37-49.
30. Pazin, M.J., and Kadonaga, J.T. (1997). SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell 88, 737-740.
31. Peterson, C.L., and Tamkun, J.W. (1995). The SWI-SNF complex: a chromatin remodeling machine? Trends Biochem. Sci. 20, 143-146.
32. Roth, S.Y., and Allis, C.D. (1996). Histone acetylation and chromatin assembly: a single escort, multiple dances? Cell 87, 5-8.
33. Sadowski, I., Ma, J., Triezenberg, S., and Ptashne, M. (1988). GAL4-VP16 is an unusually potent transcriptional activator. Nature 335, 563-564.
34. Smith, S., and Stillman, B. (1989). Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58, 15-25.
35. Smith, S., and Stillman, B. (1991). Stepwise assembly of chromatin during DNA replication in vitro. EMBO J. 10, 971-980.
36. Sogo, J.M., and Laskey, R.A. (1995). Chromatin replication and assembly. In Chromatin Structure and Gene Expression, S.C.R. Elgin, ed. (New York, NY: Oxford University Press), pp. 49-70.
37. Stein, A., Holley, K., Zeliff, J., and Townsend, T. (1985). Interactions between core histones and chromatin at physiological ionic strength. Biochemistry 24, 1783-1790.
38. Stillman, B. (1986). Chromatin assembly during SV40 DNA replication in vitro. Cell 45, 555-565.
39. Tamkun, J.W., Deuring, R., Scott, M.P., Kissinger, M., Pattatucci, A.M., Kaufman, T.C., and Kennison, J.A. (1992). brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68, 561-572.
40. Tremethick, D.J., and Frommer, M. (1992). Partial purification, from Xenopus laevis oocytes, of an ATP-dependent activity required for nucleosome spacing in vitro. J. Biol. Chem. 267, 15041-15048.
41. Tsukiyama, T., Becker, P.B., and Wu, C. (1994). ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367, 525-532.
42. Tsukiyama, T., and Wu, C. (1995). Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83, 1011-1020.
43. Tsukiyama, T., Daniel, C., Tamkun, J., and Wu, C. (1995). ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodelling factor. Cell 83, 1021-1026.
44. Tyler, J.K., Bulger, M., Kamakaka, R.T., Kobayashi, R., and Kadonaga, J.T. (1996). The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Mol. Cell. Biol. 16, 6149-6159.
45. van Holde, K.E. (1989). Chromatin (New York, NY: Springer-Verlag).
46. Varga-Weisz, P.D., Blank, T.A., and Becker, P.B. (1995). Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system. EMBO J. 14, 2209-2216.
47. Verreault, A., Kaufman, P.D., Kobayashi, R., and Stillman, B. (1996). Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87, 95-104.
48. Wall, G., Varga-Weisz, P.D., Sandaltzopoulos, R., and Becker, P.B. (1995). Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro. EMBO J. 14, 1727-1736.
49. Winston, F., and Carlson, M. (1992). Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet. 8, 387-391.
50. Wolffe, A.P. (1995). Chromatin: Structure and Function, Second Edition (San Diego, California: Academic Press).
51. Wu, R.S., Panusz, H.T., Hatch, C.L., and Bonner, W.M. (1986). Histones and their modifications. CRC Crit. Rev. Biochem. 20, 201-263.