Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF

Molecular Cell

Volumn 2, Issue 5, 1998, Pages 639-651

  Cairns, Bradley R ^a,c,d   Erdjument Bromage, Hediye ^b   Tempst, Paul ^b   Winston, Fred ^c   Kornberg, Roger D ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

^d UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; ARP7 PROTEIN, S CEREVISIAE; ARP9 PROTEIN, S CEREVISIAE; CARRIER PROTEIN; DNA BINDING PROTEIN; FUNGAL PROTEIN; HEAT SHOCK COGNATE PROTEIN 70; HEAT SHOCK PROTEIN 70; HYBRID PROTEIN; NONHISTONE PROTEIN; RSC COMPLEX, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; SWI1 PROTEIN, S CEREVISIAE; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CELL DIVISION; CHEMISTRY; CHROMATIN; GENETIC TRANSCRIPTION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; SACCHAROMYCES CEREVISIAE; SITE DIRECTED MUTAGENESIS;

ACTINS; ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CARRIER PROTEINS; CELL DIVISION; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; CONSERVED SEQUENCE; DNA-BINDING PROTEINS; FUNGAL PROTEINS; HSC70 HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PHENOTYPE; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT FUSION PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0032214123     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(00)80162-8     Document Type: Article

References (52)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Cairns, B.R. (1998). Chromatin remodelling machines: similar motors, ulterior motives. Trends Biochem. Sci. 23, 20-25.
3. Cairns, B.R., Kim, Y.J., Sayre, M.H., Laurent, B.C., and Kornberg, R.D. (1994). A multisubunit complex containing the SWI/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. USA 91, 1950-1954.
4. Cairns, B.R., Henry, N.L., and Kornberg, R.D. (1996a). TFG3/TAF30/ ANC1, an integral component of the yeast SWI/SNF complex and a homolog of the leukemogenic proteins ENL and AF-9. Mol. Cell. Biol. 16, 3308-3316.
5. Cairns, B.R., Levinson, R., Yamomoto, K.R., and Kornberg, R.D. (1996b). Essential role of Swp73 in the function of Swi/Snf complex. Genes Dev. 10, 2131-2144.
6. Cairns, B.R., Lorch, Y., Li, Y., Zhang, M., Lacomis, L., Erdjument-Bromage, H., Tempst, P., Du, J., Laurent, B., and Kornberg, R.D. (1996c). RSC, an essential, abundant chromatin remodeling complex. Cell 87, 1249-1260.
7. Cao, Y., Cairns, B.R., Kornberg, R.D., and Laurent, B.L. (1997). Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression. Mol. Cell. Biol. 17, 3323-3334.
8. Chen, X., and Rubenstein, P.A. (1995). A mutation in an ATP-binding loop of Saccharomyces cerevisiae actin (S14A) causes a temperature-sensitive phenotype in vivo and in vitro. J. Biol. Chem. 19, 11406-11414.
9. Côté, J., Quinn, J., Workman, J.L., and Peterson, C.L. (1994). Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265, 53-60.
10. Eisenmann, D.M., Dollard, C., and Winston, F. (1989). SPT15, the gene encoding the yeast TATA-binding factor TFIID, is required for normal transcription initiation in vivo. Cell 58, 1183-1191.
11. Elfring, L.K., Deuring, R., McCallum, C.M., Peterson, C.L., and Tamkun, J.W. (1994). Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14, 2225-2234.
12. Estruch, F., and Carlson, M. (1990). SNF6 encodes a nuclear protein that is required for expression of many genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 10, 2544-2533.
13. Flaherty, K.M., McKay, D.M., Kabsch, W., and Holmes, K.C. (1991). Similarity of the three-dimensional structures of actin and the ATPase fragment of the 70-kDa heat shock cognate protein. Proc. Natl. Acad. Sci. USA 88, 5041-5045.
14. Happel, A.M., Swanson, M.S., and Winston, F. (1991). The SNF2, SNF5, and SNF6 genes are required forTy transcription in Saccharomyces cerevisiae. Genetics 128, 69-77.
15. Harata, M., Karwan, A., and Wintersberger, U. (1994). An essential gene of Saccharomyces cerevisiae coding for an actin-related protein. Proc. Natl. Acad. Sci. USA 91, 8258-8262.
16. Hurley, J.H. (1996). The sugar kinase/heat shock/actin superfamily: implications of conserved structure for mechanism. Annu. Rev. Biophys. Biomol. Struct. 25, 137-162.
17. Imbalzano, A.N., Kwon, H., Green, M.R., and Kingston, R.E. (1994). Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370, 481-485.
18. Ito, T., Bulger, M., Pazin, M.J., Kobayashi, R., and Kadanoga, J. (1997). ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90, 145-155.
19. Jiang, Y.W., and Stillman, D.J. (1996). Epigenetic effects on yeast transcription caused by mutations in an actin-related protein present in the yeast nucleus. Genes Dev. 10, 604-619.
20. Kabsch, W., Mannherz, H.G., Suck D., Pai, E.F., and Holmes, K.C. (1990). Atomic structure of the actin:DNase I complex. Nature 347, 37-44.
21. Kim, Y.-J., Bjorklund, S., Li, Y., Sayre, M.H., and Kornberg, R.D. (1994). A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77, 599-608.
22. Kingston, R.E., Bunker, C.A., and Imbalzano, A.N. (1996). Repression and activation by multiprotein complexes that alter transcription. Genes Dev. 10, 905-920.
23. Koleske, A.J., and Young, R. (1994). An RNA polymerase II holoenzyme responsive to activators. Nature 368, 466-469.
24. Kwon, H., Imbalzano, A.N., Khavari, P.A., Kingston, R.E., and Green, M.R. (1994). Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370, 477-481.
25. Laurent, B.C., Treitel, M.A., and Carlson, M. (1990). The SNF5 protein of Saccharomyces cerevisiae is a glutamine-and proline-rich transcriptional activator that affects expression of a broad spectrum of genes. Mol. Cell. Biol. 10, 5616-5625.
26. Laurent, B.C., Treitel, M.A., and Carlson, M. (1991). Functional interdependence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation. Proc. Natl. Acad. Sci. USA 88, 2687-2691.
27. Laurent, B.C., Yang, X., and Carlson, M. (1992). An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family. Mol. Cell. Biol. 12, 1893-1902.
28. Neigeborn, L., and Carlson, M. (1984). Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae. Genetics 108, 845-858.
29. Papoulas, O., Beek, S.J., Moseley, S.L., McCallum, C.M., Sarte, M., Shearn, A., and Tamkun, J.W. (1998). The Drosophila trithorax group proteins BRM, ASH1 and ASH2 are subunits of the distict protein complexes. Development, 125, 3955-3966.
30. Peterson, C.L., and Herskowitz, I. (1992). Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68, 573-583.
31. Peterson, C.L., Dingwall, A., and Scott, M.P. (1994). Five SWI/SNF gene products are components of a large multi-subunit complex required for transcriptional enhancement. Proc. Natl. Acad. Sci. USA 91, 2905-2908.
32. Peterson, C.L., Zhao, Y., and Chait, B.T. (1998). Subunits of the yeast SWI/SNF complex are members of the Actin-related protein (ARP) family. J. Biol. Chem. 273, 23641-23644.
33. Poch, O., and Winsor, B. (1997). Who's who among Saccharomyces cerevisiae actin-related proteins? A classification and nomenclature proposal for a large family. Yeast 13, 1053-1058.
34. Reyes, J.C., Muchardt, C., and Yaniv, M. (1997). Components of the human SWI/SNF complex are enriched in active chromatin and are associated with the nuclear matrix. J. Cell Biol. 137, 263-274.
35. Roberts, S., and Winston, F. (1997). Essential functional interactions of SAGA, a Saccharomyces cerevisiae complex of Spt, Ada, and GcnS proteins, with the Snf/Swi and Srb/Mediator complexes. Genetics 147, 451-465.
36. Sikorski, R.S., and Hieter, P. (1989). A system of vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122, 19-27.
37. Stern, M.J., Jensen, R.E., and Herskowitz, I. (1984). Five SWI genes are required for expression of the HO gene in yeast. J. Mol. Biol. 178, 853-868.
38. Tamkun, J.W., Deuring, R., Scott, M.P., Kissinger, M., Pattatucci, A.M., Kaufman, T.C., and Kennison, J.A. (1992). brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68, 561-572.
39. Tempst, P., Geromanos, S., Elicone, C., and Erdjument-Bromage, H. (1994). Improvements in microsequencer performance for low picomole sequence analysis. METHODS Companion Meth. Enzymol. 6, 248-261.
40. -related complex with an essential function in Saccharomyces cerevisiae. Mol. Cell. Biol. 17, 1768-1775.
41. Treich, I., Cairns, B.R., Santos, T., Brewster, E., and Carlson, M. (1995). SNF11, a new component of of the yeast SNF-SWI complex that interacts with a conserved region of SNF2. Mol. Cell Biol. 15, 4240-4248.
42. 2 phase control. EMBO J. 11, 4017-4026.
43. Tsukiyama, T., and Wu, C. (1995). Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83, 1011-1020.
44. Varga-Weisz, P.D., Wilm, M., Bonte, E., Dumas, K., Mann, M., and Becker, P.B. (1997). Chromatin remodeling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388, 598-599.
45. Wang, W., Cote, J., Xue, Y., Zhou, S., Khavari, P.A., Biggar, S.R., Muchardt, C., Kalpana, G., Goff, S.P., Yaniv, M., Workman, J.L., and Crabtree, G.R. (1996a). Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. EMBO J. 15, 5370-5382.
46. Wang, W., Xue, Y., Zhou, S., Kuo, A., Cairns, B.R., Tijan, R., and Crabtree, G.R. (1996b). Diversity and specialization of mammalian SWI/SNF complexes. Genes Dev. 10, 2177-2130.
47. Wertman, K.F., Drubin, D.G., and Botstein, D. (1992). Systematic mutational analysis of the yeast ACT1 gene. Genetics 132, 337-350.
48. Wilbanks, S.M., Deluca-Flaherty, C., and McKay, D.B. (1994). Structural basis of the 70-kilodalton heat shock cognate protein ATP hydrolytic activity. J. Biol. Chem. 17, 12893-12898.
49. Winston, F. (1992). Analysis of SPT genes: a genetic approach toward analysis of TFIID, histones, and other transcription factors of yeast. In Transcriptional Regulation, S.L. McKnight and K. Yamomoto, eds. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 1271-1293.
50. Winston, F., and Carlson, M. (1992). Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet. 8, 387-391.
51. Winston, F., Dollard, C., and Ricupero-Hovasse, S.L (1995). Construction of a set of convenient S. cerevisiae strains that are isogenic to S288C. Yeast 11, 53-55.
52. Zhao, K., Wang, W., Rando, O.J., Xue, Y., Swiderek, K., Kuo, A., and Crabtree, G.R. (1998). Phosphoinostitol-dependent targetingof the SWI/SNF-like BAF complex to nuclear chromatin/matrix during lymphocyte activation. Cell, in press.