Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes

Immunity

Volumn 10, Issue 3, 1999, Pages 345-355

  Kim, John ^a   Sif, Saïd ^b   Jones, Beverly ^a   Jackson, Audrey ^a   Koipally, Joseph ^a   Heller, Elizabeth ^a   Winandy, Susan ^a   Viel, Alain ^b   Sawyer, Alan ^a   Ikeda, Toru ^c   Kingston, Robert ^b   Georgopoulos, Katia ^a  

^a Cutaneous Biology Research Center   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE DEACETYLASE; ZINC FINGER PROTEIN;

ANIMAL CELL; ARTICLE; CHROMATIN STRUCTURE; GENE EXPRESSION; GENE LOCUS; HETEROCHROMATIN; LYMPHATIC SYSTEM; LYMPHOCYTE DIFFERENTIATION; LYMPHOCYTE PROLIFERATION; MOUSE; MULTIGENE FAMILY; NEWBORN; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN LOCALIZATION; PROTEIN TARGETING; T LYMPHOCYTE; T LYMPHOCYTE ACTIVATION;

EID: 0033103374     PISSN: 10747613     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-7613(00)80034-5     Document Type: Article

References (45)

1. Aasland, R., Gibson, T.A., and Stuart, F. (1995). The PHD finger: Implications for chromatin-mediated transcriptional regulation. Trends Biochem. 20, 56-59.
2. Armstrong, J.A., Bieker, J.J., and Emerson, B.M. (1998). A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional by EKLF in vitro. Cell 95, 93-104.
3. Avitahl, N., Winandy, S., Friedrich, C., Jones, B., Ge, Y., and Georgopoulos, K. (1999). Ikaros sets thresholds for T cell activation and regulates chromosome propagation. Immunity 10, this issue, 333-343.
4. Brent, R. (1996). Gene Probes-A Practical Approach. Oxford Press.
5. Brown, K.E., Guest, S.S., Smale, S.T., Hahm, K., Merkenschlager, M., and Fisher, A.G. (1997). Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin. Cell 91, 845-854.
6. Cote, J., Quinn, J., Workman, J.L., and Peterson, C.L. (1994). Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265, 53-59.
7. Eisen, J., Sweder, K., and Hanawalt, P. (1995). Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res. 23, 2715-2723.
8. Ekwall, K., Olsoon, T., Turner, B.M., Cranston, G., and Allshire, R.C. (1997). Transient inhibition of histone deacetylation alters the structural and functional imprint at fission yeast centromeres. Cell 91, 1021-1032.
9. Fattaey, A., Helin, K., Dembrski, M., Dyson, N., Harlow, E., Vuocolo, G., Hanobik, M., Haskell, K., Oliff, A., Defeo-Jones, D., and Jones, R. (1993). Characteristics of the retinoblastoma binding proteins RBP1 and RBP2. Oncogene 8, 3149-3156.
10. Gabig, T., Mantel, P., Rosli, R., and Crean, C. (1994). Requiem: A novel zinc finger gene essential for apoptosis in myeloid cells. J. Biol. Chem. 269, 29515-29519.
11. Ge, Q., Nilasena, D., O'Brien, C., Frank, M., and Targoff, I. (1995). Molecular analysis of a major antigenic region of the 240-kD protein of Mi-2 autoantigen. J. Clin. Invest. 96, 1730-1777.
12. Georgopoulos, K., Winandy, S., and Avitahl, N. (1997). The role of the Ikaros gene in lymphocyte development and hemopoiesis. Annu. Rev. Immunol. 15, 155-176.
13. Imbalzano, A.N., Kwon, H., Green, M.R., and Kingston, R.E. (1994). Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370, 481-485.
14. Ito, T., Bulger, M., Pazin, M.J., Kobayashi, R., and Kadonaga, J.T. (1997). ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90, 145-155.
15. Jeppesen, P. (1997). Histone acetylation: A possible mechanism for the inheritance of cell memory at mitosis. Bioessays 19, 67-74.
16. Kadonaga, J.T. (1998). Eukaryotic transcription: An interlaced network of transcription factors and chromatin-modifying machines. Cell 92, 307-313.
17. Kehle, J., Beuchle, D., Treuheit, S., Christen, B., Kennison, J., Bienz, M., and Muller, J. (1998). dMi-2, a hunchback-interacting protein that functions in polycomb repression. Science 282, 1897-1900.
18. Kelley, C.M., Ikeda, T., Koipally, J., Avitahl, N., Georgopoulos, K., and Morgan, B.A. (1998). Helios, a novel dimerization partner of Ikaros expressed in the earliest hematopoietic progenitors. Curr. Biol. 8, 508-515.
19. Klug, C.A., Morrison, S.J., Masek, M., Hahm, K., Smale, S.T., and Weissman, I.L. (1998). Hematopoietic stem cells and lymphoid progenitors express different Ikaros isoforms, and Ikaros is localized to heterochromatin in immature lymphoctyes. Proc. Natl. Acad. Sci. USA 95, 657-662.
20. Kolle, D., Brosch, G., Lechner, T., Lusser, A.A., and Loidl, P. (1998). Biochemical methods for analysis of histone deacetylases. Methods 15, 323-331.
21. Kuo, M.-H., and Allis, C.D. (1998). Roles of histone acetyltransferases and deacetylases in gene regulation. Bioessays 20, 615-626.
22. Kwon, H., Imbalzano, A.N., Khavari, P.A., Kingston, R.E., and Green, M.R. (1994). Nucleosome disruption and enhancement of activator binding by human SW1/SNF complex. Nature 370, 477-481.
23. Lorch, Y., Cairns, B.R., Zhang, M., and Kornberg, R.D. (1998). Activated RSC-nucleosome complex and persistently altered form of the nucleosome. Cell 94, 29-34.
24. Mizuguchi, G., Tsukiyama, T., Wisniewski, J., and Wu, C. (1997). Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin. Mol. Cell 1, 141-150.
25. Molnár, Á., and Georgopoulos, K. (1994). The Ikaros gene encodes a family of functionally diverse zinc finger DNA binding proteins. Mol. Cell. Biol. 14, 785-794.
26. Morgan, B., Sun, L., Avitahl, N., Andrikopoulos, K., Gonzales, E., Nichogiannopoulou, A., Wu, P., Neben, S., and Georgopoulos, K. (1997). Aiolos, a lymphoid restricted transcription factor that interacts with Ikaros to regulate lymphocyte differentiation. EMBO J. 16, 2004-2013.
27. Rhodes, D., and Laskey, R.A. (1989). Assembly of nucleosomes and chromatin in vitro. Methods Enzymol. 575-585.
28. Rundlett, S.E., Carmen, A.A., Suda, N., Turner, B.M., and Grunstein, M. (1998). Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392, 831-835.
29. Schnitzler, G., Sif, S., and Kingston, R.E. (1998). Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state. Cell 94, 17-27.
30. Seelig, H., Moosbrugger, I., Ehrfeld, H., Fink, T., Renz, M., and Genth, E. (1995). The major dermatomyositis-specific Mi-2 autoantigen is a presumed helicase involved in transcription activation. Arthritis Rheum. 38, 1389-1399.
31. Seelig, H., Renz, M., Targoff, I., Ge, Q., and Frank, M. (1996). Two forms of the major antigenic protein of the dermatomyositis-specific Mi-2 autoantigen. Arthritis Rheum. 39, 1769-1771.
32. Sif, S., Stukenberg, P.T., Kirschner, M.W., and Kingston, R.E. (1998). Mitotic inactivation of a human SWI/SNF chromatin remodeling complex. Genes Dev. 12, 2842-2851.
33. Struhl, K. (1998). Histone acetylation and transcriptional regulatory mechanisms. Genes Dev. 12, 599-606.
34. Sun, L., Liu, A., and Georgopoulos, K. (1996). Zinc finger-mediated protein interactions modulate Ikaros activity, a molecular control of lymphocyte development. EMBO J. 15, 5358-5369.
35. Tong, J., Hassig, C., Schnitzler, G.R., Kingston, R.A., and Schreiber, S.L. (1998). Chromatin deacetylation by an ATP-dependent nucleosome remodeling complex. Nature 395, 917-921.
36. Tsukiyama, T., and Wu, C. (1995). Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83, 1011-1020.
37. Utley, R., Ikeda, K., Grant, P., Cote, J., Steger, D., Eberharter, A., Jogn, S., and Workman, J. (1998). Transcriptional activators direct histone acetyltransferase complexes to nucleosomes. Nature 394, 498-502.
38. Wade, P., Jones, P., Vermaak, D., and Wolffe, A. (1998). A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Curr. Biol. 8, 843-846.
39. Wang, J., Nichogiannopoulou, A., Wu, L., Sun, L., Sharpe, A., Bigby, M., and Georgopoulos, K. (1996). Selective defects in the development of the fetal and adult lymphoid system in mice with an Ikaros null mutation. Immunity 5, 537-549.
40. Wang, J.-H., Avitahl, N., Cariappa, A., Friedrich, C., Ikeda, T., Renold, A., Andrikopoulos, K., Liang, L., Pillai, S.A., and Georgopoulos, K. (1998). Aiolos regulates B cell activation and maturation to effector state. Immunity 9, 543-553.
41. Winandy, S., Wu, P., and Georgopoulos, K. (1995). A dominant mutation in the Ikaros gene leads to rapid development of leukemia and lymphoma. Cell 83, 289-299.
42. Woodage, T., Basrai, M.A., Baxevanis, A.D., Hieter, P., and Collins, F.S. (1997). Characterization of the CHD family of proteins. Proc. Natl. Acad. Sci. USA 94, 11472-11477.
43. Workman, J.L., and Kingston, B. (1998). Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu. Rev. Biochem. 67, 547-579.
44. Xue, Y., Wong, J., Moreno, G., Young, M., Cote, J., and Wang, W. (1998). NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol. Cell 2, 851-861.
45. Zhang, Y., LeRoy, G., Seelig, H.P., Lane, W.S., and Reinberg, D. (1998). The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95, 279-289.