메뉴 건너뛰기




Volumn 305, Issue 5, 2001, Pages 1057-1072

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers - Comparison with RNA and DNA (CpG)12 duplexes

Author keywords

DNA; Hydration shell; Ion binding features; Molecular dynamics; RNA

Indexed keywords

CHLORIDE ION; DOUBLE STRANDED DNA; DOUBLE STRANDED RNA; METHYL GROUP; POTASSIUM CHLORIDE; POTASSIUM ION; WATER;

EID: 0035793219     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4360     Document Type: Article
Times cited : (105)

References (111)
  • 15
    • 0033801089 scopus 로고    scopus 로고
    • Localisation and dynamics of sodium counterions around DNA in solution from molecular dynamics simulation
    • (2000) Eur. Biophys. J. , vol.29 , pp. 57-60
    • Bonvin, A.M.J.J.1
  • 29
    • 0029636784 scopus 로고
    • Mechanism and thermodynamics of ion selectivity in aqueous solutions of 18-crown-6 ether: A molecular dynamics study
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 6954-6960
    • Dang, L.X.1
  • 39
    • 0003562977 scopus 로고
    • MD Draw: A Program of Graphical Representation of Molecular Dynamics Trajectories
    • Université Louis Pasteur de Strasbourg, France
    • (1994)
    • Engler, E.1    Wipff, G.2
  • 43
  • 46
    • 0348244547 scopus 로고    scopus 로고
    • All-atom empirical force-field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
    • (2000) J. Comput. Chem. , vol.21 , pp. 88-104
    • Foloppe, N.1    MacKerell, A.D.2
  • 55
  • 61
    • 0033539650 scopus 로고    scopus 로고
    • Crystal structures of two plasmid copy control related RNA duplexes: An 18 base-pair duplex at 1.20 Å resolution and a 19 base-pair duplex at 1.55 Å resolution
    • (1999) Biochemistry , vol.38 , pp. 14784-14792
    • Klosterman, P.S.1    Shah, S.A.2    Steitz, T.A.3
  • 62
    • 0032459726 scopus 로고    scopus 로고
    • Molecular dynamic simulations of environment and sequence-dependent DNA conformations - The development of the BMS nucleic-acid force-field and comparison with experimental results
    • (1998) J. Biomol. Struct. Dynam. , vol.16 , pp. 487-509
    • Langley, D.R.1
  • 76
    • 0033582598 scopus 로고    scopus 로고
    • Determination of the residence time for water molecules hydrating B′-DNA and B-DNA, by the one-dimensional zero-enhancement nuclear overhauser effect
    • (1999) J. Mol. Biol. , vol.286 , pp. 505-519
    • Phan, A.T.1    Leroy, J.L.2    Guéron, M.3
  • 101
    • 0028904989 scopus 로고
    • Origins of the large difference in stability of DNA and RNA helices C-5 methyl and 2′-hydroxyl effects
    • (1995) Biochemistry , vol.34 , pp. 4125-4132
    • Wang, S.1    Kool, T.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.