-
2
-
-
0003068087
-
-
Neidle S., (ed), London: Cristallographic structures of RNA oligoribonucleotides and ribozymes., in
-
Masquida, B., and Westhof, E., 1998. Oxford Handbook of Nucleic Acid Structure. Edited by:Neidle, S., 533–565. London Cristallographic structures of RNA oligoribonucleotides and ribozymes., in
-
(1998)
Oxford Handbook of Nucleic Acid Structure.
, pp. 533-565
-
-
Masquida, B.1
Westhof, E.2
-
3
-
-
0030791762
-
X-ray and NMR reveal complementary views of structure and dynamics
-
Brünger, A. T., 1997. X-ray and NMR reveal complementary views of structure and dynamics. Nat. Struct. Biol. (NMR suppi).,:862–865.
-
(1997)
Nat. Struct. Biol. (NMR suppi).
, pp. 862-865
-
-
Brünger, A.T.1
-
4
-
-
0029170114
-
Molecular dynamics simulations on solvated biomolecular systems: The particle mesh Ewald method leads to stable trajectories of DNA, RNA and proteins
-
Cheatham, T. E., Miller, J. L., Fox, T., Darden, T. A., and Kollman, P. A., 1995. Molecular dynamics simulations on solvated biomolecular systems:the particle mesh Ewald method leads to stable trajectories of DNA, RNA and proteins. J. Am. Chem. Soc., 117:4193–4194.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4193-4194
-
-
Cheatham, T.E.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
5
-
-
2542564912
-
Advances and continuing challenges in achieving realistic and predictive simulations of the properties of organic and biological molecules
-
Kollman, P. A., 1996. Advances and continuing challenges in achieving realistic and predictive simulations of the properties of organic and biological molecules. Acc. Chem. Res., 29:461–469.
-
(1996)
Acc. Chem. Res.
, vol.29
, pp. 461-469
-
-
Kollman, P.A.1
-
6
-
-
0000828880
-
A simple test for evaluating the truncation effects in simulation of systems involving charged groups
-
Auffinger, P., and Beveridge, D. L., 1995. A simple test for evaluating the truncation effects in simulation of systems involving charged groups. Chem. Phys. Lett., 234:413–415.
-
(1995)
Chem. Phys. Lett.
, vol.234
, pp. 413-415
-
-
Auffinger, P.1
Beveridge, D.L.2
-
7
-
-
0023708040
-
Water: An integral part of nucleic acid structure
-
Westhof, E., 1988. Water:an integral part of nucleic acid structure. Annu. Rev. Biophys., Biophys. Chem., 17:125–144.
-
(1988)
Annu. Rev. Biophys., Biophys. Chem.
, vol.17
, pp. 125-144
-
-
Westhof, E.1
-
8
-
-
0028315988
-
Determinants of repressor/operator recognition from the structure of the trp operator binding site
-
Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joachimiak, A., and Sigler, P. B., 1994. Determinants of repressor/operator recognition from the structure of the trp operator binding site. Nature, 368:469–473.
-
(1994)
Nature
, vol.368
, pp. 469-473
-
-
Shakked, Z.1
Guzikevich-Guerstein, G.2
Frolow, F.3
Rabinovich, D.4
Joachimiak, A.5
Sigler, P.B.6
-
9
-
-
0023151436
-
Interaction between the anthracycline antibiotic and DNA: Molecular structure of daunomycin complexed to d(CGTACG) at 1.2Å resolution
-
Wang, A. H., Ughetto, G., Quigley, G. J., and Rich, A., 1987. Interaction between the anthracycline antibiotic and DNA:molecular structure of daunomycin complexed to d(CGTACG) at 1.2Å resolution. Biochemistry, 26:1152–1163.
-
(1987)
Biochemistry
, vol.26
, pp. 1152-1163
-
-
Wang, A.H.1
Ughetto, G.2
Quigley, G.J.3
Rich, A.4
-
10
-
-
0019558179
-
Structure of a B-DNA dodecamer: Conformation and dynamics
-
Drew, H. R., Wing, R. M., Takano, T., Broka, C., Tanaka, S., Itakura, K., and Dickerson, R. E., 1981. Structure of a B-DNA dodecamer:conformation and dynamics. Proc. Natl. Acad. Sci. USA, 79:2179–2183.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 2179-2183
-
-
Drew, H.R.1
Wing, R.M.2
Takano, T.3
Broka, C.4
Tanaka, S.5
Itakura, K.6
Dickerson, R.E.7
-
11
-
-
0026702486
-
DNA structure from A to Z
-
Dickerson, R. E., 1992. DNA structure from A to Z. Methods Enzymol., 211:67–111.
-
(1992)
Methods Enzymol.
, vol.211
, pp. 67-111
-
-
Dickerson, R.E.1
-
12
-
-
0022309843
-
Computer simulation of complex chemical systems
-
Clementi, E., and Corongiu, G., 1985. Computer simulation of complex chemical systems. Adv. Biophys, 20:75–107.
-
(1985)
Adv. Biophys
, vol.20
, pp. 75-107
-
-
Clementi, E.1
Corongiu, G.2
-
13
-
-
0001924031
-
-
Leontis N.B., SantaLucia J., (eds), Washington, DC: ACS, Modeling of DNA via molecular dynamics simulation: structure, bending, and conformational transitions in vol. 682
-
Beveridge, D. L., Young, M. A., and Sprous, D., 1997. Molecular Modeling of Nucleic Acids. Edited by:Leontis, N. B., and SantaLucia, J., 260–284. Washington, DC:ACS. Modeling of DNA via molecular dynamics simulation:structure, bending, and conformational transitions in vol. 682
-
(1997)
Molecular Modeling of Nucleic Acids.
, pp. 260-284
-
-
Beveridge, D.L.1
Young, M.A.2
Sprous, D.3
-
15
-
-
0030007604
-
Modeling DNA in aqueous solutions: Theoretical and computer simulation studies on the ion atmosphere of DNA
-
Jayaram, B., and Beveridge, D. L., 1996. Modeling DNA in aqueous solutions:theoretical and computer simulation studies on the ion atmosphere of DNA. Annu. Rev. Biophys. Biomol. Struct., 25:367–394.
-
(1996)
Annu. Rev. Biophys. Biomol. Struct.
, vol.25
, pp. 367-394
-
-
Jayaram, B.1
Beveridge, D.L.2
-
16
-
-
0031047279
-
Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets
-
Young, M. A., Jayaram, B., and Beveridge, D. L., 1997. Intrusion of counterions into the spine of hydration in the minor groove of B-DNA:fractional occupancy of electronegative pockets. J. Am. Chem. Soc., 119:59–69.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
17
-
-
0002705314
-
-
Franks F., (ed), Cambridge: Cambridge University Press, Hydration of nucleic acids, in vol. 5
-
Westhof, E., and Beveridge, D. L., 1990. Water Science Reviews. Edited by:Franks, F., 24–123. Cambridge:Cambridge University Press. Hydration of nucleic acids, in vol. 5
-
(1990)
Water Science Reviews.
, pp. 24-123
-
-
Westhof, E.1
Beveridge, D.L.2
-
18
-
-
0026742978
-
The nucleic acid database: A comprehensive relational database of threedimensional structures of nucleic acids
-
Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S. H., and Srinivasan, A. R., 1992. The nucleic acid database:a comprehensive relational database of threedimensional structures of nucleic acids. Biophys. J., 63:751–759.
-
(1992)
Biophys. J.
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
Olson, W.K.2
Beveridge, D.L.3
Westbrook, J.4
Gelbin, A.5
Demeny, T.6
Hsieh, S.H.7
Srinivasan, A.R.8
-
19
-
-
0026896780
-
Hydration of DNA bases: Analysis of crystallography data
-
Schneider, B., Cohen, D., and Berman, H. M., 1992. Hydration of DNA bases:analysis of crystallography data. Biopolymers, 32:725–750.
-
(1992)
Biopolymers
, vol.32
, pp. 725-750
-
-
Schneider, B.1
Cohen, D.2
Berman, H.M.3
-
20
-
-
0027138869
-
A systematic method for studying the spatial distribution of water molecules around nucleic acid bases
-
Schneider, B., Cohen, D. M., Schleifer, L., Srinivasan, A. R., Olson, W. K., and Berman, H. M., 1993. A systematic method for studying the spatial distribution of water molecules around nucleic acid bases. Biophys. J., 65:2291–2303.
-
(1993)
Biophys. J.
, vol.65
, pp. 2291-2303
-
-
Schneider, B.1
Cohen, D.M.2
Schleifer, L.3
Srinivasan, A.R.4
Olson, W.K.5
Berman, H.M.6
-
21
-
-
0028823008
-
Hydration of the DNA bases is local
-
Schneider, B., and Berman, H. M., 1995. Hydration of the DNA bases is local. Biophys. J., 69:26612669
-
(1995)
Biophys. J.
, vol.69
, pp. 26612669
-
-
Schneider, B.1
Berman, H.M.2
-
22
-
-
0023891456
-
Hydration of transfer RNA molecules: A crystallographic study
-
Westhof, E., Dumas, P., and Moras, D., 1988. Hydration of transfer RNA molecules:a crystallographic study. Biochimie, 70:145–165.
-
(1988)
Biochimie
, vol.70
, pp. 145-165
-
-
Westhof, E.1
Dumas, P.2
Moras, D.3
-
23
-
-
0001975190
-
-
Vasilescu D., Jaz J., Packer L., Pullman B., (eds), Berlin: Birkiiuser Verlag, Structural water of nucleic acids, in
-
Westhof, E., 1990. Water and Ions in Biomolecular Systems Advances in Life Science Edited by:Vasilescu, D., Jaz, J., Packer, L., and Pullman, B., 11–18. Berlin:Birkiiuser Verlag. Structural water of nucleic acids, in
-
(1990)
Water and Ions in Biomolecular Systems Advances in Life Science
, pp. 11-18
-
-
Westhof, E.1
-
24
-
-
0000514393
-
-
Westhof E., (ed), London: The MacMillen Press LTD, Structural water bridges in nucleic acids, in, 1993), vol. 17
-
Westhof, E., Water and Biological Macromolecules. Edited by:Westhof, E., 227–243. London:The MacMillen Press LTD. Structural water bridges in nucleic acids, in, 1993), vol. 17
-
Water and Biological Macromolecules.
, pp. 227-243
-
-
Westhof, E.1
-
25
-
-
0003396304
-
-
Schleyer P.V., (ed), New-York: Wiley & Sons, Molecular dynamics of nucleic acids, in, in press, Vol. 5
-
Auffinger, P., and Westhof, E., 1998. Encyclopedia of Computational Chemistry Edited by:Schleyer, P. v.R., New-York:Wiley & Sons. Molecular dynamics of nucleic acids, in, in press, Vol. 5
-
(1998)
Encyclopedia of Computational Chemistry
-
-
Auffinger, P.1
Westhof, E.2
-
26
-
-
0032054952
-
Simulation of the molecular dynamics of nucleic acids
-
Auffinger, P., and Westhof, E., 1998. Simulation of the molecular dynamics of nucleic acids. Curr. Op. Struct. Biol., 8:227–236.
-
(1998)
Curr. Op. Struct. Biol.
, vol.8
, pp. 227-236
-
-
Auffinger, P.1
Westhof, E.2
-
27
-
-
85023908760
-
-
Helsinki: Tecnonic Press, Roles of hydration on the structure and dynamics of nucleic acids, in (, 1998, in press)
-
Auffinger, P., and Westhof, E., Proceedings of ISOPOW 1998 Symposium. Helsinki:Tecnonic Press. Roles of hydration on the structure and dynamics of nucleic acids, in (, 1998, in press)
-
Proceedings of ISOPOW 1998 Symposium.
-
-
Auffinger, P.1
Westhof, E.2
-
28
-
-
84889120137
-
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kejldgaard, M., 1991. Acta Cryst., A47:110–119.
-
(1991)
Acta Cryst.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kejldgaard, M.4
-
29
-
-
0043203406
-
Crystal structures of A-DNA duplexes
-
Wahl, M., and Sundaralingam, M., 1997. Crystal structures of A-DNA duplexes. Biopolymers, 44:4563
-
(1997)
Biopolymers
, vol.44
, pp. 4563
-
-
Wahl, M.1
Sundaralingam, M.2
-
30
-
-
0030320856
-
Hydration of C-H groups in tRNA
-
Auffinger, P., Louise-May, S., and Westhof, E., 1996. Hydration of C-H groups in tRNA. Farad. Discuss., 103:151–174.
-
(1996)
Farad. Discuss.
, vol.103
, pp. 151-174
-
-
Auffinger, P.1
Louise-May, S.2
Westhof, E.3
-
31
-
-
0031566427
-
RNA hydration: Three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA Asp anticodon hairpin
-
Auffinger, P., and Westhof, E., 1997. RNA hydration:three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA Asp anticodon hairpin. J Mot. Biol., 269:326–341.
-
(1997)
J Mot. Biol.
, vol.269
, pp. 326-341
-
-
Auffinger, P.1
Westhof, E.2
-
32
-
-
0001918945
-
-
Grosjean H., Benne R., (eds), Washington, DC: American Society for Microbiology, Effects of pseudouridylation on tRNA hydration and dynamics: a theoretical approach, in 2005
-
Auffinger, P., and Westhof, E., 1998. Modification and editing of RNA. Edited by:Grosjean, H., and Benne, R., 103–112. Washington, DC:American Society for Microbiology. Effects of pseudouridylation on tRNA hydration and dynamics:a theoretical approach, in 2005
-
(1998)
Modification and editing of RNA.
, pp. 103-112
-
-
Auffinger, P.1
Westhof, E.2
-
33
-
-
0000216832
-
The C-H.O hydrogen bond: Structural implications and supramolecular design
-
Desiraju, G. R., 1996. The C-H.O hydrogen bond:structural implications and supramolecular design. Acc. Chem. Res., 29:441–449.
-
(1996)
Acc. Chem. Res.
, vol.29
, pp. 441-449
-
-
Desiraju, G.R.1
-
34
-
-
0029956116
-
RNA hydration: A detailed look
-
Egli, M., Portmann, S., and Usman, N., 1996. RNA hydration:a detailed look. Biochemistry, 35:84898494
-
(1996)
Biochemistry
, vol.35
, pp. 84898494
-
-
Egli, M.1
Portmann, S.2
Usman, N.3
-
36
-
-
0031081961
-
C-H.O. hydrogen bonding in biology
-
Wahl, C. M., and Sundaralingam, M., 1997. C-H.O. hydrogen bonding in biology. TIBS, 22:97–102.
-
(1997)
TIBS
, vol.22
, pp. 97-102
-
-
Wahl, C.M.1
Sundaralingam, M.2
-
37
-
-
0028773639
-
Crystal and molecular structure of r(CGCGAAUUAGCG): An RNA duplex containing two G(anti).A(anti) base pairs
-
Leonard, G. A., McAuley-Hecht, K. E., Ebel, S., Lough, D. M., Brown, T., and Hunter, W. N., 1994. Crystal and molecular structure of r(CGCGAAUUAGCG):an RNA duplex containing two G(anti).A(anti) base pairs. Structure, 2:483–494.
-
(1994)
Structure
, vol.2
, pp. 483-494
-
-
Leonard, G.A.1
McAuley-Hecht, K.E.2
Ebel, S.3
Lough, D.M.4
Brown, T.5
Hunter, W.N.6
-
38
-
-
0017182937
-
Structural domains of transfer RNA molecules
-
Quigley, G. J., and Rich, A., 1976. Structural domains of transfer RNA molecules. Science, 194796806
-
(1976)
Science
, vol.19
-
-
Quigley, G.J.1
Rich, A.2
-
39
-
-
0021879256
-
Crystallographic refinement of yeast aspartic acid transfer RNA
-
Westhof, E., Dumas, P., and Moras, D., 1985. Crystallographic refinement of yeast aspartic acid transfer RNA. J. Mol. Biol., 184:119–145.
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 119-145
-
-
Westhof, E.1
Dumas, P.2
Moras, D.3
-
40
-
-
0030861020
-
The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches
-
Carter, R. J., Baeyens, K. J., SantaLucia, J., Turner, D. H., and Holbrook, S. R., 1997. The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. Nucleic Acids Res., 25:4117–4122.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4117-4122
-
-
Carter, R.J.1
Baeyens, K.J.2
SantaLucia, J.3
Turner, D.H.4
Holbrook, S.R.5
-
41
-
-
0029822046
-
A. curved RNA helix incorporating an internal loop with G.A. and A.A. non-Watson-Crick base pair
-
Baeyens, K. J., DeBondt, H. L., Pardi, A., and Holbrook, S. R., 1996. A. curved RNA helix incorporating an internal loop with G.A. and A.A. non-Watson-Crick base pair. Proc. Natl. Acad. Sci. USA., 93:12851–12855.
-
(1996)
Proc. Natl. Acad. Sci. USA.
, vol.93
, pp. 12851-12855
-
-
Baeyens, K.J.1
DeBondt, H.L.2
Pardi, A.3
Holbrook, S.R.4
-
42
-
-
0030856333
-
Metals motifs and recognition in the crystal structure of a 5S rRNA domain
-
Correli, C. C., Freeborn, B., Moore, P. B., and Steitz, T. A., 1997. Metals motifs and recognition in the crystal structure of a 5S rRNA domain. Cell, 91:705–712.
-
(1997)
Cell
, vol.91
, pp. 705-712
-
-
Correli, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
43
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley, H. M., Flaherty, K. M., and McKay, D. B., 1994. Three-dimensional structure of a hammerhead ribozyme. Nature, 372:68–74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.M.1
Flaherty, K.M.2
McKay, D.B.3
-
44
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott, W. G., Finch, J. T., and Klug, A., 1995. The crystal structure of an all-RNA hammerhead ribozyme:a proposed mechanism for RNA catalytic cleavage. Cell, 81:991–1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
45
-
-
0029820625
-
Crystal structure of a group I ribozyme domain Principles of RNA packing
-
Cate, J. H., Gooding, A. R., Podell, E., Zhou, K. H., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A., 1996. Crystal structure of a group I ribozyme domain Principles of RNA packing. Science, 273:1678–1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.H.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
46
-
-
0028902990
-
Structure of an RNA double helix including uracil-uracil base pairs in an internal loop
-
Baeyens, K. J., De Bondt, H. L., and Holbrook, S. R., 1995. Structure of an RNA double helix including uracil-uracil base pairs in an internal loop. Nat. Struct. Biol., 2:56–62.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 56-62
-
-
Baeyens, K.J.1
De Bondt, H.L.2
Holbrook, S.R.3
-
47
-
-
0030586821
-
The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diver sity of recognition sites
-
Lietzke, S. E., Barnes, C. L., Berglund, J. A., and Kundrot, C. E., 1996. The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diver sity of recognition sites. Structure, 4:917–930.
-
(1996)
Structure
, vol.4
, pp. 917-930
-
-
Lietzke, S.E.1
Barnes, C.L.2
Berglund, J.A.3
Kundrot, C.E.4
-
48
-
-
0028206986
-
Structure of a mispaired RNA double helix at 1 6-Åresolution and implications for the prediction of RNA secondary structure
-
Cruse, W. B.T., Saludjian, P., Biala, E., Strazewski, P., and Prangé, T., 1994. Structure of a mispaired RNA double helix at 1 6-Åresolution and implications for the prediction of RNA secondary structure. Proc. Natl. Acad. Sci. USA, 91:4160–4164.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4160-4164
-
-
Cruse, W.B.T.1
Saludjian, P.2
Biala, E.3
Strazewski, P.4
Prangé, T.5
-
49
-
-
0030044773
-
The structure of r(UUCGCG) has a 5′-UU-over hang exhibiting Hoogsteen-like trans U.U. base pairs
-
Wahl, M. C., Rao, S. T., and Sundaralingam, M., 1996. The structure of r(UUCGCG) has a 5′-UU-over hang exhibiting Hoogsteen-like trans U.U. base pairs. Nat. Struct. Biol., 3:24–31.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 24-31
-
-
Wahl, M.C.1
Rao, S.T.2
Sundaralingam, M.3
-
50
-
-
0001968230
-
-
Söll D., RajBhandary U., (eds), Washington: American Society for Microbiology, Primary, secondary, and tertiary structures of tRNAs, in
-
Dirheimer, G., Keith, G., Dumas, P., and Westhof, E., 1995. tRNA:Structure, Biosynthesis, and Function. Edited by:Söll, D., and RajBhandary, U., 93–126. Washington:American Society for Microbiology. Primary, secondary, and tertiary structures of tRNAs, in
-
(1995)
Trna: Structure, Biosynthesis, and Function.
, pp. 93-126
-
-
Dirheimer, G.1
Keith, G.2
Dumas, P.3
Westhof, E.4
-
51
-
-
0031313598
-
Structure model and physical properties of the C-U mismatch pair in double stranded RNA in solution
-
Tanaka, Y., Kojima, C., Yamazaki, T., Kyogoku, Y., Miyashita, S., Ono, A., and Kainosho, M., 1997. Structure model and physical properties of the C-U mismatch pair in double stranded RNA in solution. Nucleic Acids Symp. Ser., 37:271–272.
-
(1997)
Nucleic Acids Symp. Ser.
, vol.37
, pp. 271-272
-
-
Tanaka, Y.1
Kojima, C.2
Yamazaki, T.3
Kyogoku, Y.4
Miyashita, S.5
Ono, A.6
Kainosho, M.7
-
52
-
-
0026000848
-
Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
-
Holbrook, S. R., Cheong, C., Tinoco, I., and Kim, S. H., 1991. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature, 353:579–581.
-
(1991)
Nature
, vol.353
, pp. 579-581
-
-
Holbrook, S.R.1
Cheong, C.2
Tinoco, I.3
Kim, S.H.4
-
53
-
-
0029776466
-
ASP anticodon hairpin: 3 ns of multiple molecular dynamics simulations
-
ASP anticodon hairpin:3 ns of multiple molecular dynamics simulations. Biophys. J., 71:940–954.
-
(1996)
Biophys. J.
, vol.71
, pp. 940-954
-
-
Auffinger, P.1
Westhof, E.2
-
55
-
-
0029051383
-
The crystal structure of r(CCCCGGGG) in two distinct lattices
-
Portmann, S., Usman, N., and Egli, M., 1995. The crystal structure of r(CCCCGGGG) in two distinct lattices. Biochemistry, 34:7569–7575.
-
(1995)
Biochemistry
, vol.34
, pp. 7569-7575
-
-
Portmann, S.1
Usman, N.2
Egli, M.3
-
56
-
-
0030768850
-
Structural variability of A-DNA in crystals of the octamer d(CCCGCGGG)
-
Fernandez, L. G., Subirana, J. A., Verdaguer, N., Pyshnyi, D., Campos, L., and Malinina, L., 1997. Structural variability of A-DNA in crystals of the octamer d(CCCGCGGG). J. Biomol. Struct. Dyn., 15:151–163.
-
(1997)
J. Biomol. Struct. Dyn.
, vol.15
, pp. 151-163
-
-
Fernandez, L.G.1
Subirana, J.A.2
Verdaguer, N.3
Pyshnyi, D.4
Campos, L.5
Malinina, L.6
-
58
-
-
0030767082
-
The role of backbone oxygen atoms in the organization of nucleic acid tertiary structure: Zippers, networks, clamps, and C-H.O hydrogen bonds
-
Berger, I., and Egli, M., 1997. The role of backbone oxygen atoms in the organization of nucleic acid tertiary structure:zippers, networks, clamps, and C-H.O hydrogen bonds. Chem. Eur. J., 3:1400–1404.
-
(1997)
Chem. Eur. J.
, vol.3
, pp. 1400-1404
-
-
Berger, I.1
Egli, M.2
-
59
-
-
0030723027
-
Rules governing the orientation of the 2′-hydroxyl group in RNA
-
Auffinger, P., and Westhof, E., 1997. Rules governing the orientation of the 2′-hydroxyl group in RNA. J. Mol. Biol., 274:54–63.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 54-63
-
-
Auffinger, P.1
Westhof, E.2
-
60
-
-
0030953141
-
Molecular dynamics simulations highlights the structural dif ferences among DNA:DNA. RNA:RNA, and DNA:RNA hybrid duplexes
-
Cheatham, T. E., and Kollman, P. A., 1997. Molecular dynamics simulations highlights the structural dif ferences among DNA:DNA. RNA:RNA, and DNA:RNA hybrid duplexes. J. Am. Chem. Soc. 1, 19:4805–4825.
-
(1997)
J. Am. Chem. Soc. 1
, vol.19
, pp. 4805-4825
-
-
Cheatham, T.E.1
Kollman, P.A.2
-
61
-
-
0032558145
-
Minor groove hydration of DNA in solution: Dependence on base composition and sequence
-
Johannesson, H., and Halle, B., 1998. Minor groove hydration of DNA in solution:dependence on base composition and sequence. J. Am. Chem. Soc., 120:6859–6870.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6859-6870
-
-
Johannesson, H.1
Halle, B.2
-
62
-
-
0014378870
-
Conformational properties of polyformycin: A polyribonucleotide with individual residues in the syn conformation
-
Ward, D. C., and Reich, E., 1968. Conformational properties of polyformycin:A polyribonucleotide with individual residues in the syn conformation. Proc. Natl. Acad. Sci. USA, 61:1494–1501.
-
(1968)
Proc. Natl. Acad. Sci. USA
, vol.61
, pp. 1494-1501
-
-
Ward, D.C.1
Reich, E.2
-
63
-
-
0031664960
-
The 5S rRNA loop E: Chemical probing and phylogenetic data vs. crystal structure
-
Leontis, N. B., and Westhof, E., 1998. The 5S rRNA loop E:chemical probing and phylogenetic data vs. crystal structure. RNA, in press
-
(1998)
RNA
-
-
Leontis, N.B.1
Westhof, E.2
-
64
-
-
0030497977
-
Structure of the purine-pyrimidine alterning RNA double helix, r(GUAUAUA)d(C) with a 3′-terminal deoxy residue
-
Wahl, M. C., Ban, C., Sekharudu, C., Ramakrishnan, B., and Sundaralingam, M., 1996. Structure of the purine-pyrimidine alterning RNA double helix, r(GUAUAUA)d(C) with a 3′-terminal deoxy residue. Acta Ciyst., D52:655–667.
-
(1996)
Acta Ciyst.
, vol.D52
, pp. 655-667
-
-
Wahl, M.C.1
Ban, C.2
Sekharudu, C.3
Ramakrishnan, B.4
Sundaralingam, M.5
-
65
-
-
0031576991
-
Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G.U. wobble pair
-
Biswas, R., Wahl, M. C., Ban, C., and Sundaralingam, M., 1997. Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G.U. wobble pair. J. Mol. Biol., 267:1149–1156.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1149-1156
-
-
Biswas, R.1
Wahl, M.C.2
Ban, C.3
Sundaralingam, M.4
-
66
-
-
0031577263
-
Crystal structure of r(GUGUGUA)dC with tandem GU/UG wobble pairs with strand slippage
-
Biswas, R., and Sundaralingam, M., 1997. Crystal structure of r(GUGUGUA)dC with tandem GU/UG wobble pairs with strand slippage. J. Mol. Biol., 270:511–519.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 511-519
-
-
Biswas, R.1
Sundaralingam, M.2
-
67
-
-
0029044469
-
Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence
-
Schindelin, H., Zhang, M., Bald, R., Fiirste, J. P., Erdman, V. A., and Heinemann, U., 1995. Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence. J. Mol. Biol., 249:595–603.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 595-603
-
-
Schindelin, H.1
Zhang, M.2
Bald, R.3
Fiirste, J.P.4
Erdman, V.A.5
Heinemann, U.6
-
68
-
-
0024469851
-
2
-
2. J. Mol. Biol., 209:459474
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 459474
-
-
Dock-Bregeon, A.C.1
Chevrier, B.2
Podjamy, A.3
Johnson, J.4
de Bear, J.S.5
Gough, G.R.6
Gilham, P.T.7
Moras, D.8
-
69
-
-
0028146491
-
Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure
-
Betzel, C., Lorenz, S., Fürste, J. P., Bald, R., Zhang, M., Schneider, T. R., Wilson, K. S., and Erdmann, V. A., 1994. Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure. FEBS Lett., 351:159–164.
-
(1994)
FEBS Lett.
, vol.351
, pp. 159-164
-
-
Betzel, C.1
Lorenz, S.2
Fürste, J.P.3
Bald, R.4
Zhang, M.5
Schneider, T.R.6
Wilson, K.S.7
Erdmann, V.A.8
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