-
1
-
-
0027050076
-
Gly(GCC) and the effect of ion binding on its structure
-
Gly(GCC) and the effect of ion binding on its structure. Eur. J. Biochem. 210:671-681.
-
(1992)
Eur. J. Biochem.
, vol.210
, pp. 671-681
-
-
Amano, M.1
Kawakami, M.2
-
2
-
-
0030791713
-
Structure and aminoacylation capacities of tRNA transcripts containing deoxyribonucleotides
-
Aphasizhev, R., A. Théobald-Dietrich, D. Kostyuk, S. N. Kochetkov, L. Kisselev, R. Giegé, and F. Fasiolo. 1997. Structure and aminoacylation capacities of tRNA transcripts containing deoxyribonucleotides. RNA. 3:893-904.
-
(1997)
RNA
, vol.3
, pp. 893-904
-
-
Aphasizhev, R.1
Théobald-Dietrich, A.2
Kostyuk, D.3
Kochetkov, S.N.4
Kisselev, L.5
Giegé, R.6
Fasiolo, F.7
-
4
-
-
0029911794
-
Asp: Structuring effects of C-H-O hydrogen bonds and of long-range hydration forces
-
Asp: structuring effects of C-H-O hydrogen bonds and of long-range hydration forces. J. Am. Chem. Soc. 118:1181-1189.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 1181-1189
-
-
Auffinger, P.1
Louise-May, S.2
Westhof, E.3
-
5
-
-
0029776466
-
Asp anticodon hairpin: 3 ns of multiple molecular dynamics simulations
-
Asp anticodon hairpin: 3 ns of multiple molecular dynamics simulations. Biophys. J. 71:940-954.
-
(1996)
Biophys. J.
, vol.71
, pp. 940-954
-
-
Auffinger, P.1
Westhof, E.2
-
7
-
-
0030723027
-
Rules governing the orientation of the 2′-hydroxyl group in RNA
-
Auffinger, P., and E. Westhof. 1997b. Rules governing the orientation of the 2′-hydroxyl group in RNA. J. Mol. Biol. 274:54-63.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 54-63
-
-
Auffinger, P.1
Westhof, E.2
-
8
-
-
0000643212
-
Effects of pseudouridylation on tRNA hydration and dynamics: A theoretical approach
-
H. Grosjean and R. Benne, editors. American Society for Microbiology, Washington, DC
-
Auffinger, P., and E. Westhof. 1998a. Effects of pseudouridylation on tRNA hydration and dynamics: a theoretical approach. In Modification and Editing of RNA. H. Grosjean and R. Benne, editors. American Society for Microbiology, Washington, DC. 103-112.
-
(1998)
Modification and Editing of RNA
, pp. 103-112
-
-
Auffinger, P.1
Westhof, E.2
-
9
-
-
0002592235
-
Molecular dynamics of nucleic acids
-
P. v. R. Schleyer, editor. Wiley and Sons, New York
-
Auffinger, P., and E. Westhof. 1998b. Molecular dynamics of nucleic acids. In Encyclopedia of Computational Chemistry. P. v. R. Schleyer, editor. Wiley and Sons, New York.
-
(1998)
Encyclopedia of Computational Chemistry
-
-
Auffinger, P.1
Westhof, E.2
-
10
-
-
0032054952
-
Simulation of the molecular dynamics of nucleic acids
-
Auffinger, P., and E. Westhof. 1998c. Simulation of the molecular dynamics of nucleic acids. Curr. Opin. Struct. Biol. 8:227-236.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 227-236
-
-
Auffinger, P.1
Westhof, E.2
-
12
-
-
0030767082
-
The role of backbone oxygen atoms in the organization of nucleic acid tertiary structure: Zippers, networks, clamps, and C-H⋯O hydrogen bonds
-
Berger, I., and M. Egli. 1997. The role of backbone oxygen atoms in the organization of nucleic acid tertiary structure: zippers, networks, clamps, and C-H⋯O hydrogen bonds. Chem. Eur. J. 3:1400-1404.
-
(1997)
Chem. Eur. J.
, vol.3
, pp. 1400-1404
-
-
Berger, I.1
Egli, M.2
-
13
-
-
0026742978
-
The nucleic acid database: A comprehensive relational database of three-dimensional structures of nucleic acids
-
Berman, H. M., W. K. Olson, D. L. Beveridge, J. Westbrook, A. Gelbin, T. Demeny, S. H. Hsieh, and A. R. Srinivasan. 1992. The nucleic acid database: a comprehensive relational database of three-dimensional structures of nucleic acids. Biophys. J. 63:751-759.
-
(1992)
Biophys. J.
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
Olson, W.K.2
Beveridge, D.L.3
Westbrook, J.4
Gelbin, A.5
Demeny, T.6
Hsieh, S.H.7
Srinivasan, A.R.8
-
14
-
-
0001924031
-
Modeling of DNA via molecular dynamics simulation: Structure, bending, and conformational transitions
-
N. B. Leontis and J. SantaLucia, editors. American Chemical Society, Washington, DC
-
Beveridge, D. L., M. A. Young, and D. Sprous. 1997. Modeling of DNA via molecular dynamics simulation: structure, bending, and conformational transitions. In Molecular Modeling of Nucleic Acids. N. B. Leontis and J. SantaLucia, editors. American Chemical Society, Washington, DC. 260-284.
-
(1997)
Molecular Modeling of Nucleic Acids
, pp. 260-284
-
-
Beveridge, D.L.1
Young, M.A.2
Sprous, D.3
-
16
-
-
0029644475
-
Problems in simulating macromolecular movements
-
Caspar, D. L. D. 1995. Problems in simulating macromolecular movements. Structure. 3:327-329.
-
(1995)
Structure
, vol.3
, pp. 327-329
-
-
Caspar, D.L.D.1
-
17
-
-
0029820625
-
Crystal structure of a group I ribozyme domain - Principles of RNA packing
-
Cate, J. H., A. R. Gooding, E. Podell, K. H. Zhou, B. L. Golden, C. E. Kundrot, T. R. Cech, and J. A. Doudna. 1996. Crystal structure of a group I ribozyme domain - principles of RNA packing. Science. 273: 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.H.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
18
-
-
0029170114
-
Molecular dynamics simulations on solvated biomolecular systems: The particle mesh Ewald method leads to stable trajectories of DNA, RNA and proteins
-
Cheatham, T. E., J. L. Miller, T. Fox, T. A. Darden, and P. A. Kollman. 1995. Molecular dynamics simulations on solvated biomolecular systems: the particle mesh Ewald method leads to stable trajectories of DNA, RNA and proteins. J. Am. Chem. Soc. 117:4193-4194.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4193-4194
-
-
Cheatham, T.E.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
20
-
-
0022545661
-
NMR study of isoleucine transfer RNA from Thermus thermophilus
-
Choi, B. S., and A. G. Redfield. 1986. NMR study of isoleucine transfer RNA from Thermus thermophilus. Biochemistry. 25:1529-1534.
-
(1986)
Biochemistry
, vol.25
, pp. 1529-1534
-
-
Choi, B.S.1
Redfield, A.G.2
-
22
-
-
0028912595
-
A sampling problem in molecular dynamics simulations of macromolecules
-
Clarage, J. B., T. Romo, B. K. Andrews, B. M. Pettitt, and G. N. Phillips. 1995. A sampling problem in molecular dynamics simulations of macromolecules. Proc. Natl. Acad. Sci. USA. 92:3288-3292.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3288-3292
-
-
Clarage, J.B.1
Romo, T.2
Andrews, B.K.3
Pettitt, B.M.4
Phillips, G.N.5
-
23
-
-
0030856333
-
Metals, motifs and recognition in the crystal structure of a 5S rRNA domain
-
Correll, C. C., B. Freeborn, P. B. Moore, and T. A. Steitz. 1997. Metals, motifs and recognition in the crystal structure of a 5S rRNA domain. Cell. 91:705-712.
-
(1997)
Cell
, vol.91
, pp. 705-712
-
-
Correll, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
24
-
-
0031574326
-
The loop E-loop D region of Escherichia coli 5S rRNA: The solution structure reveals an unusual loop that may be important for binding ribosomal proteins
-
Dallas, A., and P. B. Moore. 1998. The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins. Structure. 5:1639-1653.
-
(1998)
Structure
, vol.5
, pp. 1639-1653
-
-
Dallas, A.1
Moore, P.B.2
-
25
-
-
33846823909
-
Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems
-
Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald: an N·log(N) method for Ewald sums in large systems. J. Chem. Phys. 98:10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
26
-
-
0028978764
-
The occurrence of C-H⋯O hydrogen bonds in proteins
-
Derewenda, Z. S., L. Lee, and U. Derewenda. 1995. The occurrence of C-H⋯O hydrogen bonds in proteins. J. Mol. Biol. 252:248-262.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 248-262
-
-
Derewenda, Z.S.1
Lee, L.2
Derewenda, U.3
-
27
-
-
0001968230
-
Primary, secondary, and tertiary structures of tRNAs
-
D. Söll and U. RajBhandary, editors. American Society for Microbiology, Washington, DC
-
Dirheimer, G., G. Keith, P. Dumas, and E. Westhof. 1995. Primary, secondary, and tertiary structures of tRNAs. In tRNA: Structure, Biosynthesis, and Function. D. Söll and U. RajBhandary, editors. American Society for Microbiology, Washington, DC. 93-126.
-
(1995)
tRNA: Structure, Biosynthesis, and Function
, pp. 93-126
-
-
Dirheimer, G.1
Keith, G.2
Dumas, P.3
Westhof, E.4
-
28
-
-
0024469851
-
2
-
2. J. Mol. Biol. 209:459-474.
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 459-474
-
-
Dock-Bregeon, A.C.1
Chevrier, B.2
Podjarny, A.3
Johnson, J.4
De Bear, J.S.5
Gough, G.R.6
Gilham, P.T.7
Moras, D.8
-
30
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
31
-
-
0031237692
-
Experiment vs force fields: DNA conformation from molecular dynamics simulations
-
Feig, M., and B. M. Pettitt. 1997. Experiment vs force fields: DNA conformation from molecular dynamics simulations. J. Chem. Phys. B. 101:7361-7363.
-
(1997)
J. Chem. Phys. B.
, vol.101
, pp. 7361-7363
-
-
Feig, M.1
Pettitt, B.M.2
-
33
-
-
0028916219
-
Identification of base-triples in RNA using comparative sequence analysis
-
Gautheret, D., S. H. Damberger, and R. R. Gutell. 1995. Identification of base-triples in RNA using comparative sequence analysis. J. Mol. Biol. 248:27-43.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 27-43
-
-
Gautheret, D.1
Damberger, S.H.2
Gutell, R.R.3
-
34
-
-
0030814332
-
Inferring the conformation of RNA base pairs and triples from patterns of sequence variation
-
Gautheret, D., and R. R. Gutell. 1997. Inferring the conformation of RNA base pairs and triples from patterns of sequence variation. Nucleic Acids Res. 25:1559-1564.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1559-1564
-
-
Gautheret, D.1
Gutell, R.R.2
-
35
-
-
0024309855
-
Structure of an unmodified tRNA molecule
-
Hall, K. B., J. R. Sampson, O. C. Uhlenbeck, and A. G. Redfield. 1989. Structure of an unmodified tRNA molecule. Biochemistry. 28: 5794-5801.
-
(1989)
Biochemistry
, vol.28
, pp. 5794-5801
-
-
Hall, K.B.1
Sampson, J.R.2
Uhlenbeck, O.C.3
Redfield, A.G.4
-
36
-
-
0020480722
-
Phe. I. Assignment of the iminoproton resonances of the acceptor and D stem by means of NOE experiments at 500 MHz
-
Phe. I. Assignment of the iminoproton resonances of the acceptor and D stem by means of NOE experiments at 500 MHz. Nucleic Acids Res. 10:6981-7000.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 6981-7000
-
-
Heerschap, A.1
Haasnoot, C.A.G.2
Hilbers, C.W.3
-
37
-
-
0030849184
-
Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme
-
Hermann, T., P. Auffinger, W. G. Scott, and E. Westhof. 1997. Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme. Nucleic Acids Res. 25:3421-3427.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3421-3427
-
-
Hermann, T.1
Auffinger, P.2
Scott, W.G.3
Westhof, E.4
-
38
-
-
0031915278
-
Molecular dynamics investigations of the hammerhead ribozyme RNA
-
Hermann, T., P. Auffinger, and E. Westhof. 1998. Molecular dynamics investigations of the hammerhead ribozyme RNA. Eur. J. Biophys. 27:153-165.
-
(1998)
Eur. J. Biophys.
, vol.27
, pp. 153-165
-
-
Hermann, T.1
Auffinger, P.2
Westhof, E.3
-
39
-
-
0028258296
-
Structural elements that contribute to an unusual tertiary interaction in a transfer RNA
-
Hou, Y. M. 1994. Structural elements that contribute to an unusual tertiary interaction in a transfer RNA. Biochemistry. 33:4677-4681.
-
(1994)
Biochemistry
, vol.33
, pp. 4677-4681
-
-
Hou, Y.M.1
-
40
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hünenberger, P. H., A. E. Mark, and W. F. van Gunsteren. 1995. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J. Mol. Biol. 252:492-503.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 492-503
-
-
Hünenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
41
-
-
0022000774
-
Phe using nuclear Overhauser effects
-
Phe using nuclear Overhauser effects. Biochemistry. 24:4307-4314.
-
(1985)
Biochemistry
, vol.24
, pp. 4307-4314
-
-
Hyde, E.I.1
Reid, B.R.2
-
43
-
-
0017361887
-
A crystallographic study of metal-binding to yeast phenylalanine transfer RNA
-
Jack, A., J. E. Ladner, D. Rhodes, R. S. Brown, and A. Klug. 1977. A crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J. Mol. Biol. 111:315-328.
-
(1977)
J. Mol. Biol.
, vol.111
, pp. 315-328
-
-
Jack, A.1
Ladner, J.E.2
Rhodes, D.3
Brown, R.S.4
Klug, A.5
-
46
-
-
0028631131
-
Effect of nucleoside modifications on the structure and thermal stability of Escherichia coli valine tRNA
-
Kintanar, A., D. Yue, and J. Horowitz. 1994. Effect of nucleoside modifications on the structure and thermal stability of Escherichia coli valine tRNA. Biochimie. 76:1192-1204.
-
(1994)
Biochimie.
, vol.76
, pp. 1192-1204
-
-
Kintanar, A.1
Yue, D.2
Horowitz, J.3
-
47
-
-
0025325784
-
Process of base pair opening and proton exchange in Z-DNA
-
Kochoyan, M., J. L. Leroy, and M. Gueron. 1990. Process of base pair opening and proton exchange in Z-DNA. Biochemistry. 29:4799-4805.
-
(1990)
Biochemistry
, vol.29
, pp. 4799-4805
-
-
Kochoyan, M.1
Leroy, J.L.2
Gueron, M.3
-
48
-
-
4243785712
-
Accurate crystal molecular dynamics simulations using particle-mesh Ewald: RNA dinucleotides -ApU and GpC
-
Lee, H., T. Darden, and L. Pedersen. 1995a. Accurate crystal molecular dynamics simulations using particle-mesh Ewald: RNA dinucleotides -ApU and GpC. Chem. Phys. Lett. 243:229-235.
-
(1995)
Chem. Phys. Lett.
, vol.243
, pp. 229-235
-
-
Lee, H.1
Darden, T.2
Pedersen, L.3
-
49
-
-
0001628106
-
Molecular dynamics simulation studies of a high resolution Z-DNA crystal
-
Lee, H., T. A. Darden, and L. G. Pedersen. 1995b. Molecular dynamics simulation studies of a high resolution Z-DNA crystal. J. Chem. Phys. 102:3830-3834.
-
(1995)
J. Chem. Phys.
, vol.102
, pp. 3830-3834
-
-
Lee, H.1
Darden, T.A.2
Pedersen, L.G.3
-
50
-
-
0021824735
-
Internal motions of transfer RNA: A study of exchanging protons by magnetic resonance
-
Leroy, J. L., N. Bolo, N. Figueroa, P. Plateau, and M. Guéron. 1985. Internal motions of transfer RNA: a study of exchanging protons by magnetic resonance. J. Biomol. Struct. Dyn. 2:915-939.
-
(1985)
J. Biomol. Struct. Dyn.
, vol.2
, pp. 915-939
-
-
Leroy, J.L.1
Bolo, N.2
Figueroa, N.3
Plateau, P.4
Guéron, M.5
-
52
-
-
0003068087
-
Crystallographic structures of RNA oligoribonucleotides and ribozymes
-
S. Neidle, editor. Oxford University Press, London
-
Masquida, B., and E. Westhof. 1998. Crystallographic structures of RNA oligoribonucleotides and ribozymes. In Oxford Handbook of Nucleic Acid Structure. S. Neidle, editor. Oxford University Press, London. 533-565.
-
(1998)
Oxford Handbook of Nucleic Acid Structure
, pp. 533-565
-
-
Masquida, B.1
Westhof, E.2
-
54
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F., and E. Westhof. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
55
-
-
0025194337
-
Proton exchange and base-pair opening kinetics in 5′-d(CGCGAATTCGCG)-3′ and related dodecamers
-
Moe, J. G., and I. M. Russu. 1990. Proton exchange and base-pair opening kinetics in 5′-d(CGCGAATTCGCG)-3′ and related dodecamers. Nucleic Acids Res. 18:821-827.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 821-827
-
-
Moe, J.G.1
Russu, I.M.2
-
57
-
-
0022666946
-
Asp, a model for tRNA-mRNA recognition
-
Asp, a model for tRNA-mRNA recognition. Proc. Natl. Acad. Sci. USA. 83:932-936.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 932-936
-
-
Moras, D.1
Dock, A.C.2
Dumas, P.3
Westhof, E.4
Romby, P.5
Ebel, J.P.6
Giegé, R.7
-
58
-
-
0031563817
-
Structure, recognition and adaptative binding in RNA aptamer complexes
-
Patel, D. J., A. K. Suri, F. Jiang, L. Jiang, P. Fan, R. A. Kumar, and S. Nonin. 1997. Structure, recognition and adaptative binding in RNA aptamer complexes. J. Mol. Biol. 272:645-664.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 645-664
-
-
Patel, D.J.1
Suri, A.K.2
Jiang, F.3
Jiang, L.4
Fan, P.5
Kumar, R.A.6
Nonin, S.7
-
59
-
-
0004279414
-
-
University of California, San Francisco, CA
-
Pearlman, D. A., D. A. Case, J. W. Caldwell, W. S. Ross, T. E. Cheatham, D. M. Ferguson, G. L. Seibel, U. C. Singh, P. K. Weiner, and P. A. Kollman. 1994. AMBER 4.1. University of California, San Francisco, CA.
-
(1994)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham, T.E.5
Ferguson, D.M.6
Seibel, G.L.7
Singh, U.C.8
Weiner, P.K.9
Kollman, P.A.10
-
60
-
-
0025186647
-
Atomic charges for DNA constituents derived from single-crystal x-ray diffraction data
-
Pearlman, D. A., and S. H. Kim. 1990. Atomic charges for DNA constituents derived from single-crystal x-ray diffraction data. J. Mol. Biol. 211:171-187.
-
(1990)
J. Mol. Biol.
, vol.211
, pp. 171-187
-
-
Pearlman, D.A.1
Kim, S.H.2
-
62
-
-
0017182937
-
Structural domains of transfer RNA molecules
-
Quigley, G. J., and A. Rich. 1976. Structural domains of transfer RNA molecules. Science. 194:796-806.
-
(1976)
Science
, vol.194
, pp. 796-806
-
-
Quigley, G.J.1
Rich, A.2
-
63
-
-
0031516150
-
Treatment of counterions in computer simulations of DNA
-
K. B. Lipkowitz and D. B. Boyd, editors. VCH Publishers, New York
-
Ravishanker, G., P. Auffinger, D. R. Langley, B. Jayaram, M. A. Young, and D. L. Beveridge. 1997. Treatment of counterions in computer simulations of DNA. In Reviews in Computational Chemistry. K. B. Lipkowitz and D. B. Boyd, editors. VCH Publishers, New York. 317-372.
-
(1997)
Reviews in Computational Chemistry
, pp. 317-372
-
-
Ravishanker, G.1
Auffinger, P.2
Langley, D.R.3
Jayaram, B.4
Young, M.A.5
Beveridge, D.L.6
-
64
-
-
0025337446
-
Phe (yeast). Implications for conformational change and activity
-
Phe (yeast). Implications for conformational change and activity. Biochemistry. 29: 6025-6032.
-
(1990)
Biochemistry
, vol.29
, pp. 6025-6032
-
-
Reid, S.S.1
Cowan, J.A.2
-
66
-
-
0029044469
-
Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence
-
Schindelin, H., M. Zhang, R. Bald, J. P. Fürste, V. A. Erdman, and U. Heinemann. 1995. Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence. J. Mol. Biol. 249: 595-603.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 595-603
-
-
Schindelin, H.1
Zhang, M.2
Bald, R.3
Fürste, J.P.4
Erdman, V.A.5
Heinemann, U.6
-
68
-
-
0003729361
-
-
American Society for Microbiology, Washington, DC
-
Söll, D., and U. L. RajBhandary. 1995. tRNA, Structure, Biosynthesis, and Function. American Society for Microbiology, Washington, DC.
-
(1995)
tRNA, Structure, Biosynthesis, and Function
-
-
Söll, D.1
RajBhandary, U.L.2
-
69
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., C. Horn, M. Brown, A. Loudovitch, and S. Steinberg. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 26:148-153.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Loudovitch, A.4
Steinberg, S.5
-
70
-
-
0017295709
-
Conformational changes of transfer RNA. The role of magnesium(II)
-
Stein, A., and D. M. Crothers. 1976a. Conformational changes of transfer RNA. The role of magnesium(II). Biochemistry. 15:160-167.
-
(1976)
Biochemistry
, vol.15
, pp. 160-167
-
-
Stein, A.1
Crothers, D.M.2
-
72
-
-
0030399839
-
C-H⋯o hydrogen bonding in crystals
-
Steiner, T. 1996. C-H⋯O hydrogen bonding in crystals. Cryst. Rev. 6:1-57.
-
(1996)
Cryst. Rev.
, vol.6
, pp. 1-57
-
-
Steiner, T.1
-
73
-
-
0030834307
-
Molecular dynamics simulation of DNA with protein's consistent GROMOS force field and the role of counterions' symmetry
-
Tapia, O., and I. Velazquez. 1997. Molecular dynamics simulation of DNA with protein's consistent GROMOS force field and the role of counterions' symmetry. J. Am. Chem. Soc. 119:5934-5938.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 5934-5938
-
-
Tapia, O.1
Velazquez, I.2
-
75
-
-
0029139897
-
Nanosecond dynamics and structure of a model DNA triplex helix in saltwater solution
-
Weerasinghe, S., P. E. Smith, V. Mohan, Y.-K. Cheng, and B. M. Pettitt. 1995a. Nanosecond dynamics and structure of a model DNA triplex helix in saltwater solution. J. Am. Chem. Soc. 117:2147-2158.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 2147-2158
-
-
Weerasinghe, S.1
Smith, P.E.2
Mohan, V.3
Cheng, Y.-K.4
Pettitt, B.M.5
-
76
-
-
0029591501
-
Structure and stability of a model pyrimidine-purine-purine DNA triple helix with a GC-T mismatch by simulation
-
Weerasinghe, S., P. E. Smith, and M. Pettitt. 1995b. Structure and stability of a model pyrimidine-purine-purine DNA triple helix with a GC-T mismatch by simulation. Biochemistry. 34:16269-16278.
-
(1995)
Biochemistry
, vol.34
, pp. 16269-16278
-
-
Weerasinghe, S.1
Smith, P.E.2
Pettitt, M.3
-
77
-
-
0021879256
-
Crystallographic refinement of yeast aspartic acid transfer RNA
-
Westhof, E., P. Dumas, and D. Moras. 1985. Crystallographic refinement of yeast aspartic acid transfer RNA. J. Mol. Biol. 184:119-145.
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 119-145
-
-
Westhof, E.1
Dumas, P.2
Moras, D.3
-
78
-
-
0000521158
-
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals
-
Westhof, E., P. Dumas, and D. Moras. 1988. Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Acta Crystallogr. A. 44:112-123.
-
(1988)
Acta Crystallogr. A.
, vol.44
, pp. 112-123
-
-
Westhof, E.1
Dumas, P.2
Moras, D.3
-
79
-
-
0342576048
-
The use of molecular dynamics simulations for modelling nucleic acids
-
J. M. Goodfellow, editor. VCH, New York
-
Westhof, E., C. Rubin-Carrez, and V. Fritsch. 1995. The use of molecular dynamics simulations for modelling nucleic acids. In Computer Modelling in Molecular Biology. J. M. Goodfellow, editor. VCH, New York. 103-131.
-
(1995)
Computer Modelling in Molecular Biology
, pp. 103-131
-
-
Westhof, E.1
Rubin-Carrez, C.2
Fritsch, V.3
-
80
-
-
0022551018
-
Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles
-
Westhof, E., and M. Sundaralingam. 1986. Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles. Biochemistry. 25:4868-4878.
-
(1986)
Biochemistry
, vol.25
, pp. 4868-4878
-
-
Westhof, E.1
Sundaralingam, M.2
-
81
-
-
33748674257
-
B to A transition of DNA on the nanosecond time scale
-
Yang, L., and B. M. Pettitt. 1996. B to A transition of DNA on the nanosecond time scale. J. Phys. Chem. 100:2564-2566.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 2564-2566
-
-
Yang, L.1
Pettitt, B.M.2
-
82
-
-
0029110156
-
Toward the accurate modeling of DNA: The importance of long-range electrostatics
-
York, D. M., W. Yang, H. Lee, T. Darden, and L. G. Pedersen. 1995. Toward the accurate modeling of DNA: the importance of long-range electrostatics. J. Am. Chem. Soc. 117:5001-5002.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5001-5002
-
-
York, D.M.1
Yang, W.2
Lee, H.3
Darden, T.4
Pedersen, L.G.5
-
83
-
-
0032575760
-
Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn
-
Young, M. A., and D. L. Beveridge. 1998. Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn. Biophys. J. 281:675-687.
-
(1998)
Biophys. J.
, vol.281
, pp. 675-687
-
-
Young, M.A.1
Beveridge, D.L.2
-
84
-
-
0030862276
-
A 5-nanosecond molecular dynamics trajectory for B-DNA: Analysis of structure, motions, and solvation
-
Young, M., G. Ravishanker, and D. L. Beveridge. 1997. A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation. Biophys. J. 73:2313-2336.
-
(1997)
Biophys. J.
, vol.73
, pp. 2313-2336
-
-
Young, M.1
Ravishanker, G.2
Beveridge, D.L.3
-
86
-
-
0029109915
-
Molecular dynamics of RNA with the OPLS force field. Aqueous simulation of a hairpin containing a tetranucleotide loop
-
Zichi, D. A. 1995. Molecular dynamics of RNA with the OPLS force field. Aqueous simulation of a hairpin containing a tetranucleotide loop. J. Am. Chem. Soc. 117:2957-2969.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 2957-2969
-
-
Zichi, D.A.1
|