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Volumn 3, Issue 1, 1996, Pages 24-31

The structure of r(UUCGCG) has a 5′-UU-overhang exhibiting Hoogsteen-like trans U·U base pairs

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; RNA;

EID: 0030044773     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: 10.1038/nsb0196-24     Document Type: Article
Times cited : (108)

References (27)
  • 1
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H. W., Flaherty, K. M. & McKay, D. B. Three-dimensional structure of a hammerhead ribozyme. Nature 372, 68-74 (1994).
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 2
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott, W. G., Finch, J. T. & Klug, A. The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002 (1995).
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 3
    • 0025678737 scopus 로고
    • Modeling of the three-dimensional architecture of group I catalytic introns on comparative sequence analysis
    • Michel, F. & Westhuf, E. Modeling of the three-dimensional architecture of group I catalytic introns on comparative sequence analysis. J. molec. Biol. 216, 585-610 (1990).
    • (1990) J. Molec. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhuf, E.2
  • 4
    • 0026000848 scopus 로고
    • Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
    • Holbrook, S. R., Cheong, C., Tinoco Jr., I. & Kim, S. H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature 353, 579-581 (1991).
    • (1991) Nature , vol.353 , pp. 579-581
    • Holbrook, S.R.1    Cheong, C.2    Tinoco Jr., I.3    Kim, S.H.4
  • 5
    • 0028902990 scopus 로고
    • Structure of an RNA double helix including uracil-uracil base pairs in an internal loop
    • Baeyens, K. J., De Bondt, H. L. & Holbrook, S. R. Structure of an RNA double helix including uracil-uracil base pairs in an internal loop. Nature struct. Biol. 2, 55-62 (1995).
    • (1995) Nature Struct. Biol. , vol.2 , pp. 55-62
    • Baeyens, K.J.1    De Bondt, H.L.2    Holbrook, S.R.3
  • 6
    • 0025648066 scopus 로고
    • Local variability and base sequence effects in DNA crystal structures
    • Bhattacharyya, D. & Bansal, M. Local variability and base sequence effects in DNA crystal structures. J. Biomol. struct. Dyn. 8, 539-572 (1990).
    • (1990) J. Biomol. Struct. Dyn. , vol.8 , pp. 539-572
    • Bhattacharyya, D.1    Bansal, M.2
  • 7
    • 0020385863 scopus 로고
    • Mechanism of sequence-dependent stacking of bases in B-DNA
    • Calladine, C. R. Mechanism of sequence-dependent stacking of bases in B-DNA. J. molec. Biol. 161, 343-352 (1982).
    • (1982) J. Molec. Biol. , vol.161 , pp. 343-352
    • Calladine, C.R.1
  • 8
    • 0019002130 scopus 로고
    • X-ray structure of a cytidyl-3′,5′-adenosine-proflavine complex: A self-paired parallel-chain double helical dimer with an intercalated acridine dye
    • Westhof, E. & Sundaralingam, M. X-ray structure of a cytidyl-3′,5′-adenosine-proflavine complex: A self-paired parallel-chain double helical dimer with an intercalated acridine dye. Proc. natn. Acad. Sci. U.S.A. 77, 1852-1856 (1980).
    • (1980) Proc. Natn. Acad. Sci. U.S.A. , vol.77 , pp. 1852-1856
    • Westhof, E.1    Sundaralingam, M.2
  • 9
    • 0028139236 scopus 로고
    • Crystal structure of intercalated four-stranded d(C3T) at 1.4Å resolution
    • Kang, C. H. et al. Crystal structure of intercalated four-stranded d(C3T) at 1.4Å resolution. Proc. natn. Acad. Sci. U.S.A. 91, 11636-11640 (1994).
    • (1994) Proc. Natn. Acad. Sci. U.S.A. , vol.91 , pp. 11636-11640
    • Kang, C.H.1
  • 10
    • 0026636095 scopus 로고
    • Westhof's rule
    • Westhof, E. Westhof's rule. Nature 358, 459-460 (1992).
    • (1992) Nature , vol.358 , pp. 459-460
    • Westhof, E.1
  • 11
    • 0026759706 scopus 로고
    • A comprehensive classification of nucleic acid structural families based on strand direction and base pairing
    • Lavery, R., Zakrezewska, K., Sun, J. S. & Harvey, S. C. A comprehensive classification of nucleic acid structural families based on strand direction and base pairing. Nucleic Acids Res. 20, 5011-5016 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5011-5016
    • Lavery, R.1    Zakrezewska, K.2    Sun, J.S.3    Harvey, S.C.4
  • 12
    • 0029140885 scopus 로고
    • Do CH-O hydrogen bonds contribute to the stability of nucleic acid base pairs?
    • Leonard, G. A., McAuley-Hecht, K. E., Brown, T. & Hunter, W. N. Do CH-O hydrogen bonds contribute to the stability of nucleic acid base pairs? Acta Crystallogr. D51, 136-139 (1995).
    • (1995) Acta Crystallogr. , vol.D51 , pp. 136-139
    • Leonard, G.A.1    McAuley-Hecht, K.E.2    Brown, T.3    Hunter, W.N.4
  • 13
    • 0028978764 scopus 로고
    • The occurrence of C-H-O hydrogen bonds in proteins
    • Derewenda, Z. S., Lee, L. & Derewenda, U. The occurrence of C-H-O hydrogen bonds in proteins. J. molec. Biol. 252, 248-262 (1995).
    • (1995) J. Molec. Biol. , vol.252 , pp. 248-262
    • Derewenda, Z.S.1    Lee, L.2    Derewenda, U.3
  • 14
    • 0025134897 scopus 로고
    • Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns
    • Michel, F., Ellington, A. D., Couture, S. & Szostak, J. Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns. Nature 347, 578-580 (1990).
    • (1990) Nature , vol.347 , pp. 578-580
    • Michel, F.1    Ellington, A.D.2    Couture, S.3    Szostak, J.4
  • 15
    • 0028206986 scopus 로고
    • The structure of a mispaired RNA double helix at 1.6Å resolution and implications for the prediction of RNA secondary structure
    • Cruse, W. et al. The structure of a mispaired RNA double helix at 1.6Å resolution and implications for the prediction of RNA secondary structure. Proc. natn. Acad. Sci. U.S.A. 91, 4160-4164 (1994).
    • (1994) Proc. Natn. Acad. Sci. U.S.A. , vol.91 , pp. 4160-4164
    • Cruse, W.1
  • 16
    • 0018689799 scopus 로고
    • Molecular structure of a left-handed double helical DNA fragment at atomic resolution
    • Wang, A. H. J. et al. Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature 282, 680-686 (1979).
    • (1979) Nature , vol.282 , pp. 680-686
    • Wang, A.H.J.1
  • 17
    • 0014980698 scopus 로고
    • Stereochemistry of nucleic acids and their constituents. X. Solid-state base-stacking patterns in nucleic acid constituents and polynucleotides
    • Bugg, C. E.. Thomas, J. M., Sundaralingam, M. & Rao, S. T. Stereochemistry of nucleic acids and their constituents. X. Solid-state base-stacking patterns in nucleic acid constituents and polynucleotides. Biopolymers 10, 175-219 (1971).
    • (1971) Biopolymers , vol.10 , pp. 175-219
    • Bugg, C.E.1    Thomas, J.M.2    Sundaralingam, M.3    Rao, S.T.4
  • 18
    • 0028146491 scopus 로고
    • Crystal structure of domain A of Thermus Flavus 5S rRNA and the contribution of water molecules to its structure
    • Betzel, C., Lorenz, S., Fürste, J. P., Bald, R., Zhang, M., Schneider, T. R., Wilson, K. S. & Erdmann, V. A. Crystal structure of domain A of Thermus Flavus 5S rRNA and the contribution of water molecules to its structure. FEBS Lett. 351, 1509-164 (1994).
    • (1994) FEBS Lett. , vol.351 , pp. 1509-2164
    • Betzel, C.1    Lorenz, S.2    Fürste, J.P.3    Bald, R.4    Zhang, M.5    Schneider, T.R.6    Wilson, K.S.7    Erdmann, V.A.8
  • 20
    • 0013364977 scopus 로고
    • Prediction and experimental investigation of RNA secondary and tertiary foldings
    • eds K. Nagai & I. W. Mattaj Oxford University Press Inc., New York, NY
    • Westhof, E. & Michel, F. Prediction and experimental investigation of RNA secondary and tertiary foldings, in RNA-protein interactions (eds K. Nagai & I. W. Mattaj) 25-51 (Oxford University Press Inc., New York, NY, 1994).
    • (1994) RNA-protein Interactions , pp. 25-51
    • Westhof, E.1    Michel, F.2
  • 21
    • 0028986877 scopus 로고
    • High-resolution structure of a DNA helix forming (C·G)*G base triplets
    • van Meerveit, L. et al. High-resolution structure of a DNA helix forming (C·G)*G base triplets. Nature 374, 742-744 (1995).
    • (1995) Nature , vol.374 , pp. 742-744
    • Van Meerveit, L.1
  • 22
    • 3142567987 scopus 로고
    • Software for a diffractometer with multiwire area detector
    • Howard, A. J., Nielsen, C. & Xuang, N. H. Software for a diffractometer with multiwire area detector. Meths. Enzymol. 144, 211-237 (1985).
    • (1985) Meths. Enzymol. , vol.144 , pp. 211-237
    • Howard, A.J.1    Nielsen, C.2    Xuang, N.H.3
  • 23
    • 0022325950 scopus 로고
    • Resolution of phase ambiguity in macromolecular crystallography
    • Wang, B. C. Resolution of phase ambiguity in macromolecular crystallography. Meths. Enzymol. 115, 90-112 (1985).
    • (1985) Meths. Enzymol. , vol.115 , pp. 90-112
    • Wang, B.C.1
  • 26
    • 0000164395 scopus 로고
    • Crystallographic refinement by simulated annealing
    • eds N.W. Isaacs & M.R.Taylor Clarendon Press, Oxford
    • Brünger, A. T. Crystallographic refinement by simulated annealing, in Crystallographic computing 4: Techniques and new technologies (eds N.W. Isaacs & M.R.Taylor) 126-140 (Clarendon Press, Oxford, 1988).
    • (1988) Crystallographic Computing 4: Techniques and New Technologies , pp. 126-140
    • Brünger, A.T.1
  • 27
    • 0017411710 scopus 로고
    • The protein data bank: A computer-based archival file for macromolecule structures
    • Bernstein, F. C. et al. The protein data bank: a computer-based archival file for macromolecule structures. J. molec. Biol. 112, 535-542 (1977).
    • (1977) J. Molec. Biol. , vol.112 , pp. 535-542
    • Bernstein, F.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.