A 'hydrat-ion' spine in a B-DNA minor groove

Journal of the American Chemical Society

Volumn 121, Issue 15, 1999, Pages 3590-3595

  Tereshko, Valentina ^a   Minasov, George ^a   Egli, Martin ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

WATER;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; DNA STRUCTURE; HYDRATION; STRUCTURE ANALYSIS; X RAY DIFFRACTION;

EID: 0033594498     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja984346+     Document Type: Article

References (37)

1. Neidle, S. Nature Struct. Biol. 1998, 5, 754-756.
2. Dickerson, R. E.; Goodsell, D.; Kopka, M. L. J. Mol. Biol. 1996, 256, 108-125.
3. Grzeskowiak, K. Chem. Biol. 1996, 3, 785-790.
4. Dickerson, R. E.; Goodsell, D. S.; Neidle, S. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 3579-3583.
5. Kopka, M. L.; Fratini, A. V.; Drew, H. R.; Dickerson, R. E. J. Mol. Biol. 1983, 163, 129-146.
6. Drew, H. R.; Dickerson, R. E. J. Mol. Biol. 1981, 151, 535-556.
7. Young, M. A.; Jayaram, B.; Beveridge, D. L. J. Am. Chem. Soc. 1997, 119, 59-69.
8. Young, M. A.; Jayaram, B.; Beveridge, D. L. Biophys. J. 1997, 73, 2313-2336.
9. Hud, N. V.; Feigon, J. J. Am. Chem. Soc. 1997, 119, 5756-5757.
10. (a) Shui, X.; McFail-Isom, L.; Hu, G. H.; Williams, L. D. Biochemistry 1998, 37, 8341-8355.
11. (b) Shui, X.; Sines, C. C.; McFail-Isom, L.; Van Derveer, D.; Williams, L. D. Biochemistry 1998, 37, 16877-16887.
12. Berger, I.; Tereshko, V.; Ikeda, H.; Marquez, V. E.; Egli, M. Nucleic Acids Res. 1998, 26, 2473-2480.
13. Tereshko, V.; Minasov, G.; Egli, M. J. Am. Chem. Soc. 1999, 121, 470-471.
14. Otwinowski, Z.; Minor, W. Methods Enzymol. 1997, 276, 307-326.
15. Sheldrick, G. M. SHELX-97, Göttingen University, Göttingen, Germany, 1997.
16. Brünger, A. T. Nature 1992, 355, 472-475.
17. Parkinson, G.; Vojtechovsky, J.; Clowney, L.; Brünger, A. T.; Berman, H. M. Acta Crystallogr. D 1996, 52, 57-64.
18. Brown, I. D.; Skowron, A. J. Am. Chem. Soc. 1990, 112, 3401-3403.
19. Pullman, B.; Pullman, A. Stud. Biophys. 1981, 86, 95-102.
20. Pullman, B. J. Biomol. Struct. Dyn. 1983, 1, 773-794.
21. Seeman, N. C.; Rosenberg, J. M.; Suddath, F. L.; Park Kim, J. J.; Rich, A. J. Mol. Biol. 1976, 104, 109-144.
22. Pauling, L. The Nature of the Chemical Bond; Cornell University Press: Ithaca, NY, 1960.
23. Dobler, M. Ionophores and Their Structures; J. Wiley & Sons: New York, 1981.
24. Kim, K.; Jordan, K. D.; Zwier, T. S. J. Am. Chem. Soc. 1994, 116, 11568-11569.
25. Liu, K.; Brown, M. G.; Carter, C.; Saykally, R. J.; Gregory, J. K.; Clary, D. C. Nature 1996, 381, 501-503.
26. Kennard, O.; Cruse, B. T.; Nachman, J.; Prange, T.; Shakked, Z.; Rabinovich, D. J. Bioniol. Struct. Dyn. 1986, 4, 623-647.
27. Egli, M.; Portmann, S.; Usman, N. Biochemistry 1996, 35, 8489-8494.
28. Harlow, R. L. J. Am. Chem. Soc. 1993, 115, 9838-9839.
29. Guerri, A.; Simpson, I. J.; Neidle, S. Nucleic Acids Res. 1998, 26, 2873-2878.
30. Kopka, M. L.; Larsen, T. A. In Nucleic Acid Targeted Drug Design; Probst, C. L., Perun, T. J., Eds.; Marcel Dekker: New York, 1992; pp 303-374.
31. Goodsell, D. S.; Dickerson, R. E. J. Med. Chem. 1986, 29, 727-733.
32. Pelton, J. G.; Wemmer, D. E. Biochemistry 1988, 27, 8088-8096.
33. Egli, M.; Gessner, R. V. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 180-184.
34. Kopka, M. L.; Han, G. W.; Goodsell, D. S.; Chiu, T. K.; Walker, W. L.; Lown, J. W.; Dickerson, R. E. In Structure, Motion, Interaction and Expression of Biological Macromolecules: Proceedings of the Tenth Conversation in the Discipline of Biomolecular Stereodynamics, Albany, NY, June 17-21, 1997; Sarma, R. H., Sarma, M. H., Eds.; Adenine Press: Albany, NY, 1998; pp 177-191.
35. Di Cera, E.; Guinto, E. R.; Vindigni, A.; Dang, Q. D.; Ayala, Y. M.; Wuyi, M.; Tulinsky, A. J. Biol. Chem. 1995, 270, 22089-22092.
36. Nayal, M.; Di Cera, E. J. Mol. Biol. 1996, 256, 228-234.
37. Brown, I. D.; Wu, K. K. Acta Crystallogr. B 1976, 32, 1957-1959.