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Volumn 1, Issue 2, 2000, Pages 99-113

Functional analysis of the yeast genome

Author keywords

Functional analysis; Gene function; Genomics; Yeast

Indexed keywords

SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 0034286111     PISSN: 1438793X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s101420000012     Document Type: Review
Times cited : (10)

References (95)
  • 1
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci USA 96:6745-6750
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 2
    • 0032502964 scopus 로고    scopus 로고
    • Updated catalogue of homologues to human disease-related proteins in the yeast genome
    • Andrade MA, Sander C, Valencia A (1998) Updated catalogue of homologues to human disease-related proteins in the yeast genome. FEBS Lett 426:7-16
    • (1998) FEBS Lett , vol.426 , pp. 7-16
    • Andrade, M.A.1    Sander, C.2    Valencia, A.3
  • 4
    • 0029839312 scopus 로고    scopus 로고
    • A computer filtering method to drive out tiny genes from the yeast genome
    • Barry C, Fichant G, Kalogeropoulos A, Quentin Y (1996) A computer filtering method to drive out tiny genes from the yeast genome. Yeast 12:1163-78
    • (1996) Yeast , vol.12 , pp. 1163-1178
    • Barry, C.1    Fichant, G.2    Kalogeropoulos, A.3    Quentin, Y.4
  • 5
    • 0030960992 scopus 로고    scopus 로고
    • Small open reading frames: Beautiful needles in the haystack
    • Basrai MA, Hieter P, Boeke JD (1997) Small open reading frames: beautiful needles in the haystack. Genome Res 7:768-71
    • (1997) Genome Res , vol.7 , pp. 768-771
    • Basrai, M.A.1    Hieter, P.2    Boeke, J.D.3
  • 6
    • 0032826786 scopus 로고    scopus 로고
    • NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae
    • Basrai MA, Velculescu VE, Kinzler KW, Hieter P (1999) NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae. Mol Cell Biol 19:7041-7049
    • (1999) Mol Cell Biol , vol.19 , pp. 7041-7049
    • Basrai, M.A.1    Velculescu, V.E.2    Kinzler, K.W.3    Hieter, P.4
  • 7
    • 84984934346 scopus 로고    scopus 로고
    • Gene expression informatics - It's all in your mine
    • Bassett DE Jr, Eisen MB, Boguski MS (1999) Gene expression informatics - it's all in your mine. Nat Genet 21:51-55
    • (1999) Nat Genet , vol.21 , pp. 51-55
    • Bassett Jr., D.E.1    Eisen, M.B.2    Boguski, M.S.3
  • 9
    • 0026697166 scopus 로고
    • DMC1: A meiosisspecific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression
    • Bishop DK, Park D, Xu L, Kleckner N (1992) DMC1: a meiosisspecific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression. Cell 69:439-456
    • (1992) Cell , vol.69 , pp. 439-456
    • Bishop, D.K.1    Park, D.2    Xu, L.3    Kleckner, N.4
  • 10
    • 0030842569 scopus 로고    scopus 로고
    • Osmoresponsive proteins and functional assessment strategies in Saccharomyces cerevisiae
    • Blomberg A (1997) Osmoresponsive proteins and functional assessment strategies in Saccharomyces cerevisiae. Electrophoresis 18:1429-1440
    • (1997) Electrophoresis , vol.18 , pp. 1429-1440
    • Blomberg, A.1
  • 11
    • 0032919458 scopus 로고    scopus 로고
    • Options available - From start to finish - For obtaining expression data by microarray
    • Bowtell DD (1999) Options available - from start to finish - for obtaining expression data by microarray. Nat Genet 21:25-32
    • (1999) Nat Genet , vol.21 , pp. 25-32
    • Bowtell, D.D.1
  • 13
    • 0028215472 scopus 로고
    • Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae
    • Burns N, Grimwade B, Ross-Macdonald PB, Choi EY, Finberg K, Roeder GS, Snyder M (1994) Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae. Genes Dev 8:1087-1105
    • (1994) Genes Dev , vol.8 , pp. 1087-1105
    • Burns, N.1    Grimwade, B.2    Ross-Macdonald, P.B.3    Choi, E.Y.4    Finberg, K.5    Roeder, G.S.6    Snyder, M.7
  • 14
    • 0033950636 scopus 로고    scopus 로고
    • The awesome power of yeast biochemical genomics
    • Carlson I (2000) The awesome power of yeast biochemical genomics. Trends Genet 16:49-51
    • (2000) Trends Genet , vol.16 , pp. 49-51
    • Carlson, I.1
  • 21
    • 0031793076 scopus 로고    scopus 로고
    • Role of the myb-like protein bas1p in Saccharomyces cerevisiae: A proteome analysis
    • Denis V, Boucherie H, Monribot C, Daignan-Fornier B (1998) Role of the myb-like protein bas1p in Saccharomyces cerevisiae: a proteome analysis. Mol Microbiol 30: 557-566
    • (1998) Mol Microbiol , vol.30 , pp. 557-566
    • Denis, V.1    Boucherie, H.2    Monribot, C.3    Daignan-Fornier, B.4
  • 22
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 26
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen MB, Brown PO (1999) DNA arrays for analysis of gene expression. Methods Enzymol 303:179-205
    • (1999) Methods Enzymol , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 29
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • Ferea TL, Botstein D, Brown PO, Rosenzweig RF (1999) Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Natl Acad Sci USA 96:9721-9726
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 30
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O (1989) A novel genetic system to detect protein-protein interactions. Nature 340:245-246
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 31
    • 0030747938 scopus 로고    scopus 로고
    • Human genetic diseases: A cross-talk between man and yeast
    • Foury F (1997) Human genetic diseases: a cross-talk between man and yeast. Gene 195:1-10
    • (1997) Gene , vol.195 , pp. 1-10
    • Foury, F.1
  • 32
    • 0030963019 scopus 로고    scopus 로고
    • Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
    • Fromont-Racine M, Rain JC, Legrain P (1997) Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat Genet 16:277-282
    • (1997) Nat Genet , vol.16 , pp. 277-282
    • Fromont-Racine, M.1    Rain, J.C.2    Legrain, P.3
  • 43
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19:1720-1730
    • (1999) Mol Cell Biol , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 44
    • 0032894060 scopus 로고    scopus 로고
    • The Yeast Proteome Database (YPD): A model for the organization and presentation of genome-wide functional data
    • Hodges PE, McKee AH, Davis BP, Payne WE, Garrels JI (1999) The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data. Nucleic Acids Res 27:69-73
    • (1999) Nucleic Acids Res , vol.27 , pp. 69-73
    • Hodges, P.E.1    McKee, A.H.2    Davis, B.P.3    Payne, W.E.4    Garrels, J.I.5
  • 46
    • 0031026008 scopus 로고    scopus 로고
    • The protein kinases of budding yeast: Six score and more
    • Hunter T, Plowman GD (1997) The protein kinases of budding yeast: six score and more. Trends Biochem Sci 22:18-22
    • (1997) Trends Biochem Sci , vol.22 , pp. 18-22
    • Hunter, T.1    Plowman, G.D.2
  • 47
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • Ito T, Tashiro K, Muta S, Ozawa R, Chiba T, Nishizawa M, Yamamoto K, Kuhara S, Sakaki Y (2000) Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA 97:1143-1147
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 48
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • Jelinsky SA, Samson LD (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc Natl Acad Sci USA 96:1486-1491
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 50
    • 0032800891 scopus 로고    scopus 로고
    • Total number of coding open reading frames in the yeast genome
    • Kowalczuk M, Mackiewicz P, Gierlik A, Dudek MR, Cebrat S (1999) Total number of coding open reading frames in the yeast genome. Yeast 15:1031-1034
    • (1999) Yeast , vol.15 , pp. 1031-1034
    • Kowalczuk, M.1    Mackiewicz, P.2    Gierlik, A.3    Dudek, M.R.4    Cebrat, S.5
  • 51
    • 0029870293 scopus 로고    scopus 로고
    • Establishing genetic interactions by a synthetic dosage lethality phenotype
    • Kroll ES, Hyland KM, Hieter P, Li JJ (1996) Establishing genetic interactions by a synthetic dosage lethality phenotype. Genetics 143:95-102
    • (1996) Genetics , vol.143 , pp. 95-102
    • Kroll, E.S.1    Hyland, K.M.2    Hieter, P.3    Li, J.J.4
  • 56
    • 0031761689 scopus 로고    scopus 로고
    • Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae
    • Lutfiyya LL, Iyer VR, DeRisi J, De Vit MJ, Brown PO, Johnston M (1998) Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics 150:1377-1391
    • (1998) Genetics , vol.150 , pp. 1377-1391
    • Lutfiyya, L.L.1    Iyer, V.R.2    DeRisi, J.3    De Vit, M.J.4    Brown, P.O.5    Johnston, M.6
  • 57
    • 0033607161 scopus 로고    scopus 로고
    • Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants
    • Madhani HD, Galitski T, Lander ES, Fink GR (1999) Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. Proc Natl Acad Sci USA 96:12530-12535
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 12530-12535
    • Madhani, H.D.1    Galitski, T.2    Lander, E.S.3    Fink, G.R.4
  • 58
  • 65
    • 0030669393 scopus 로고    scopus 로고
    • Classification of all putative permeases and other membrane plurispanners of the major facilitator superfamily encoded by the complete genome of Saccharomyces cerevisiae
    • Nelissen B, De Wachter R, Goffeau A (1997) Classification of all putative permeases and other membrane plurispanners of the major facilitator superfamily encoded by the complete genome of Saccharomyces cerevisiae. FEMS Microbiol Rev 21:113-134
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 113-134
    • Nelissen, B.1    De Wachter, R.2    Goffeau, A.3
  • 67
    • 0028797968 scopus 로고
    • Gene linkage of two-dimensional polyacrylamide gel electrophoresis resolved proteins from isogene families in Saccharomyces cerevisiae by microsequencing of in-gel trypsin generated peptides
    • Norbeck J, Blomberg A (1995) Gene linkage of two-dimensional polyacrylamide gel electrophoresis resolved proteins from isogene families in Saccharomyces cerevisiae by microsequencing of in-gel trypsin generated peptides. Electrophoresis 16: 149-156
    • (1995) Electrophoresis , vol.16 , pp. 149-156
    • Norbeck, J.1    Blomberg, A.2
  • 68
    • 0034731810 scopus 로고    scopus 로고
    • The level of cAMP-dependent protein kinase A activity strongly affects osmotolerance and osmo-instigated gene expression changes in Saccharomyces cerevisiae
    • Norbeck J, Blomberg A (2000) The level of cAMP-dependent protein kinase A activity strongly affects osmotolerance and osmo-instigated gene expression changes in Saccharomyces cerevisiae. Yeast 16:121-137
    • (2000) Yeast , vol.16 , pp. 121-137
    • Norbeck, J.1    Blomberg, A.2
  • 70
    • 0032905252 scopus 로고    scopus 로고
    • Action of BTN1, the yeast orthologue of the gene mutated in Batten disease
    • Pearce DA, Ferea T, Nosel SA, Das B, Sherman F (1999) Action of BTN1, the yeast orthologue of the gene mutated in Batten disease. Nat Genet 22:55-58
    • (1999) Nat Genet , vol.22 , pp. 55-58
    • Pearce, D.A.1    Ferea, T.2    Nosel, S.A.3    Das, B.4    Sherman, F.5
  • 75
    • 0031031055 scopus 로고    scopus 로고
    • A multipurpose transposon system for analyzing protein production, localization, and function in Saccharomyces cerevisiae
    • Ross-Macdonald P, Sheehan A, Roeder GS, Snyder M (1997) A multipurpose transposon system for analyzing protein production, localization, and function in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 94:190-195
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 190-195
    • Ross-Macdonald, P.1    Sheehan, A.2    Roeder, G.S.3    Snyder, M.4
  • 77
    • 13044310139 scopus 로고    scopus 로고
    • Transposon mutagenesis for the analysis of protein production, function, and localization
    • Ross-Macdonald P, Sheehan A, Friddle C, Roeder GS, Snyder M (1999b) Transposon mutagenesis for the analysis of protein production, function, and localization. Methods Enzymol 303: 512-532
    • (1999) Methods Enzymol , vol.303 , pp. 512-532
    • Ross-Macdonald, P.1    Sheehan, A.2    Friddle, C.3    Roeder, G.S.4    Snyder, M.5
  • 78
    • 0029972156 scopus 로고    scopus 로고
    • Identification of proteins of the yeast protein map using genetically manipulated strains and peptide-mass fingerprinting
    • Sagliocco F, Guillemot JC, Monribot C, Capdevielle J, Perrot M, Ferran E, Ferrara P, Boucherie H (1996) Identification of proteins of the yeast protein map using genetically manipulated strains and peptide-mass fingerprinting. Yeast 12:1519-1533
    • (1996) Yeast , vol.12 , pp. 1519-1533
    • Sagliocco, F.1    Guillemot, J.C.2    Monribot, C.3    Capdevielle, J.4    Perrot, M.5    Ferran, E.6    Ferrara, P.7    Boucherie, H.8
  • 79
    • 0029812283 scopus 로고    scopus 로고
    • A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
    • Shalon D, Smith SJ, Brown PO (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6:639-645
    • (1996) Genome Res , vol.6 , pp. 639-645
    • Shalon, D.1    Smith, S.J.2    Brown, P.O.3
  • 81
    • 0029804246 scopus 로고    scopus 로고
    • Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy
    • Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis R W (1996) Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nat Genet 14:450-456
    • (1996) Nat Genet , vol.14 , pp. 450-456
    • Shoemaker, D.D.1    Lashkari, D.A.2    Morris, D.3    Mittmann, M.4    Davis, R.W.5
  • 82
    • 0029022831 scopus 로고
    • Genetic footprinting: A genomic strategy for determining a gene's function given its sequence
    • Smith V, Botstein D, Brown PO (1995) Genetic footprinting: a genomic strategy for determining a gene's function given its sequence. Proc Natl Acad Sci USA 92:6479-6483
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 6479-6483
    • Smith, V.1    Botstein, D.2    Brown, P.O.3
  • 83
    • 0030450059 scopus 로고    scopus 로고
    • Functional analysis of the genes of yeast chromosome V by genetic footprinting
    • Smith V, Chou KN, Lashkari D, Botstein D, Brown PO (1996) Functional analysis of the genes of yeast chromosome V by genetic footprinting. Science 274:2069-2074
    • (1996) Science , vol.274 , pp. 2069-2074
    • Smith, V.1    Chou, K.N.2    Lashkari, D.3    Botstein, D.4    Brown, P.O.5
  • 86
    • 0033584803 scopus 로고    scopus 로고
    • Essay: Amersham Pharmacia Biotech & science prize. Tantalizing transcriptomes-SAGE and its use in global gene expression analysis
    • Velculescu VE (1999) Essay: Amersham Pharmacia Biotech & science prize. Tantalizing transcriptomes-SAGE and its use in global gene expression analysis. Science 286:1491-1492
    • (1999) Science , vol.286 , pp. 1491-1492
    • Velculescu, V.E.1
  • 90
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
    • Winzeler EA, et al (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906
    • (1999) Science , vol.285 , pp. 901-906
    • Winzeler, E.A.1
  • 92
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe KH, Shields DC (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 94
    • 0031796893 scopus 로고    scopus 로고
    • Comprehensive mammalian genetics: History and future prospects of gene trapping in the mouse
    • Zambrowicz BP, Friedrich GA (1998) Comprehensive mammalian genetics: history and future prospects of gene trapping in the mouse. Int J Dev Biol 42:1025-1036
    • (1998) Int J Dev Biol , vol.42 , pp. 1025-1036
    • Zambrowicz, B.P.1    Friedrich, G.A.2


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