Using the Saccharomyces genome database (SGD) for analysis of protein similarities and structure

Nucleic Acids Research

Volumn 27, Issue 1, 1999, Pages 74-78

  Chervitz, Stephen A ^a   Hester, Erich T ^a   Ball, Catherine A ^a   Dolinski, Kara ^a   Dwight, Selina S ^a   Harris, Midori A ^a   Juvik, Gail ^a   Malekian, Alice ^a   Roberts, Shannon ^a   Roe, TaiYun ^a   Scafe, Charles ^a   Schroeder, Mark ^a   Sherlock, Gavin ^a   Weng, Shuai ^a   Zhu, Yan ^a   Cherry, J Michael ^a   Botstein, David ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; CAENORHABDITIS ELEGANS; DATA BASE; EUKARYOTE; FUNGAL GENETICS; GENOME; INTERNET; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; SHORT SURVEY;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; FUNGAL PROTEINS; GENOME, FUNGAL; INTERNET; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0032952822     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.1.74     Document Type: Short Survey

References (22)

1. Cherry, J.M., Adler, C., Ball, C., Chervitz, S.A., Dwight, S.S., Hester, E.T., Jia, Y., Juvik, G., Roe, T., Schroeder, M., Weng, S. and Botstein, D. (1998) Nucleic Acids Res., 26, 73-79.
2. Dolinski, K., Ball, C., Chervitz, S.A., Dwight, S.S., Harris, M., Roberts, S., Roe, T., Cherry, J.M. and Botstein, D. (1998) Yeast, 14, in press.
3. Smith, T.F. and Waterman, M.S. (1981). J. Mol. Biol., 147, 195-197.
4. TimeLogic: http://www.timelogic.com
5. Gish, W. and Altschul, S.F. (1996) Methods Enzymol., 266, 460-490.
6. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) J. Mol. Biol., 215, 403-410.
7. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Nucleic Acids Res., 25, 3389-3402.
8. Abola, E.E., Sussman, J.L., Prilusky, J. and Manning, N.O. (1997) Methods Enzymol., 277, 556-571.
9. Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Jr, Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T. and Tasumi, M. (1977) J. Mol. Biol., 112, 535-542.
10. Sayle, R.A. and Milner-White, E.J. (1995) Trends Biochem. Sci., 9, 374.
11. Walther, D. (1997) Trends Biochem. Sci., 22, 274-275.
12. Hogue, C.W. (1997) Trends Biochem. Sci., 22, 314-316.
13. Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) J. Mol. Biol., 247, 536-540.
14. Hubbard, T.J.P., Murzin, A.G., Brenner, S.E. and Chothia, C. (1997) Nucleic Acids Res., 25, 236-239.
15. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thomton, J.M. (1997) Structure, 5, 1093-1108.
16. Laskowski, R.A., Hutchinson, E.G., Michie, A.D., Wallace, A.C., Jones, M.L. and Thornton, J.M. (1997) Trends Biochem. Sci., 22, 488-490.
17. Sánchez, R. and Sali, A. (1997) Proteins, Suppl. 1, 50-58.
18. Gerstein, M. and Krebs, W. (1998) Nucleic Acids Res., 26, 4280-4290.
19. Ohkawa, H., Ostell, J. and Bryant, S. (1995) ISMB, 3, 259-267.
20. Peitsch, M.C. (1996) Biochem. Soc. Trans., 24, 274-279.
21. Nevill-Manning, C.G., Wu, T.D. and Brutlag, D.L. (1998) Proc. Natl Acad. Sci. USA, 95, 5865-5871.
22. Sonnhammer, E.L., Eddy, S.R., Birney, E., Bateman, A. and Durbin, R. (1998) Nucleic Acids Res., 26, 320-322.