Total number of coding open reading frames in the yeast genome

Yeast

Volumn 15, Issue 11, 1999, Pages 1031-1034

  Kowalczuk, Maria ^a   Mackiewicz, Pawel ^a   Gierlik, Agnieszka ^a   Dudek, Miroslaw R ^a   Cebrat, Stanislaw ^a  

^a UNIVERSITY OF WROC AW   (Poland)

Author keywords

Coding sequence; Gene number; Genome coding capacity; Open reading frame

Indexed keywords

ARTICLE; DATA BASE; FUNGAL GENETICS; GENE FUNCTION; GENOME; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

CODON; DATABASES, FACTUAL; DNA, FUNGAL; GENOME, FUNGAL; OPEN READING FRAMES; SACCHAROMYCES CEREVISIAE;

FUNGI; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0032800891     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199908)15:11<1031::AID-YEA431>3.0.CO;2-G     Document Type: Article

References (13)

1. Benetzen, J. L. and Hall, B. D. (1982). Codon selection in yeast. J. Biol. Chem. 257, 3026-3031.
2. Casari, G., de Druvar, A., Sander, C. and Schneider, R. (1996). Bioinformatics and the discovery of gene function. Trends Genet. 12, 244-255.
3. Cebrat, S. and Dudek, M. R. (1996). Generation of overlapping reading frames. Trends Genet. 12, 12.
4. Cebrat, S., Dudek, M. R., Mackiewicz, P., Kowalczuk, M. and Fita, M. (1997). Asymmetry of coding versus non-coding strand in coding sequences of different genomes. Microb. Comp. Genom. 4, 259-268.
5. Dujon, B. (1996). The yeast genome project: what did we learn? Trends Genet. 12, 263-270.
6. Dujon, B. et al. (106 co-authors). (1994). Complete DNA sequence of yeast chromosome XI. Nature 369, 371-378.
7. Gierlik, A., Mackiewicz, P., Kowalczuk, M., Dudek, M. R. and Cebrat, S. (1999). Some hints on open reading frame statistics-how ORF length depends on selection. Int. J. Modem Phys. C (in press).
8. Goffeau, A., Barrel, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., Louis, E. J., Mewes, H. W., Murakami, Y., Philippsen, P., Tettelin, H. and Oliver, S. G. (1996). Life with 6000 genes. Science 274(5287), 546.
9. Mewes, H. W., Albermann, K., Bähr, M., Frishman, D., Gleissner, A., Hani, J., Heumann, K., Kleine, K., Maierl, A., Oliver, S. G., Pfeiffer, F. and Zollner, A. (1997). Overview of the yeast genome. Nature 387, 7-8.
10. Oliver, S. G. et al. (146 co-authors). (1992). Complete DNA sequence of yeast chromosome III. Nature 357, 38-46.
11. Sharp, P. M. and Li, W. H. (1987). The codon adaptation index: a measure of directional synonymous codon usage bias and its potential applications. Nucleic Acids Res. 15, 1281-1295.
12. Sokal, R. R. and Rohlf, F. J. (1981). Biometry: The Principles and Practice of Statistics in Biological Research. 2nd edn. W.H. Freeman, New York.
13. Winzeler, E. A. and Davis, R. W. (1997). Functional analysis of the yeast genome. Curr. Opin. Genet. Dev. 7(6), 771-776.