-
1
-
-
0031027901
-
Molecular basis of HIV-1 protease drug resistance: Structural analysis of mutant proteases complexed with cyclic urea inhibitors
-
P.J. Ala, E.E. Huston, R.M. Klabe, D.D. McCabe, J.L. Duke, C.J. Rizzo, B.D. Korant, R.D. DeLoskey, P.Y.S. Lam, C.N. Hodge, and C.H. Chang Molecular basis of HIV-1 protease drug resistance structural analysis of mutant proteases complexed with cyclic urea inhibitors Biochemistry 36 1997 1573 1580
-
(1997)
Biochemistry
, vol.36
, pp. 1573-1580
-
-
Ala, P.J.1
Huston, E.E.2
Klabe, R.M.3
McCabe, D.D.4
Duke, J.L.5
Rizzo, C.J.6
Korant, B.D.7
Deloskey, R.D.8
Lam, P.Y.S.9
Hodge, C.N.10
Chang, C.H.11
-
2
-
-
0031724008
-
Resistance to immunodeficiency virus type 1 protease inhibitors
-
D. Boden, and M. Markowitz Resistance to immunodeficiency virus type 1 protease inhibitors Antimicrob. Agents Chemother. 42 1998 2775 2783
-
(1998)
Antimicrob. Agents Chemother.
, vol.42
, pp. 2775-2783
-
-
Boden, D.1
Markowitz, M.2
-
3
-
-
9944232242
-
Group contributions to the thermodynamic properties of non-ionic organic solutes in dilute aqueous solution
-
S. Cabani, P. Gianni, V. Mollica, and L. Lepori Group contributions to the thermodynamic properties of non-ionic organic solutes in dilute aqueous solution J. Solution Chem. 10 1981 563 595
-
(1981)
J. Solution Chem.
, vol.10
, pp. 563-595
-
-
Cabani, S.1
Gianni, P.2
Mollica, V.3
Lepori, L.4
-
5
-
-
1242269308
-
Polymorphism and drug-selected mutations in the protease gene of human immunodeficiency virus type 2 from patients living in Southern France
-
P. Colson, M. Henry, C. Tourres, D. Lozachmeur, H. Gallais, J.A. Gastaut, J. Moreau, and C. Tamalet Polymorphism and drug-selected mutations in the protease gene of human immunodeficiency virus type 2 from patients living in Southern France J. Clin. Microbiol. 42 2004 570 577
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 570-577
-
-
Colson, P.1
Henry, M.2
Tourres, C.3
Lozachmeur, D.4
Gallais, H.5
Gastaut, J.A.6
Moreau, J.7
Tamalet, C.8
-
6
-
-
0028943992
-
In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors
-
J.H. Condra, W.A. Schleif, O.M. Blahy, L.J. Gabryelski, D.J. Graham, J.C. Quintero, A. Rhodes, H.L. Robbins, E. Roth, M. Shivaprakash, D. Titus, T. Yang, H. Teppler, K.E. Squires, P.J. Deutsch, and E.A. Emini In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors Nature 374 1995 569 571
-
(1995)
Nature
, vol.374
, pp. 569-571
-
-
Condra, J.H.1
Schleif, W.A.2
Blahy, O.M.3
Gabryelski, L.J.4
Graham, D.J.5
Quintero, J.C.6
Rhodes, A.7
Robbins, H.L.8
Roth, E.9
Shivaprakash, M.10
Titus, D.11
Yang, T.12
Teppler, H.13
Squires, K.E.14
Deutsch, P.J.15
Emini, E.A.16
-
8
-
-
0036137494
-
Designing drugs against heterogeneous targets
-
E. Freire Designing drugs against heterogeneous targets Nat. Biotechnol. 20 2002 15 16
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 15-16
-
-
Freire, E.1
-
9
-
-
0242320727
-
HIV protease: Enzyme function and drug resistance
-
G. Litwack Academic Press New York
-
S. Gulnik, J.W. Erickson, and D. Xie HIV protease enzyme function and drug resistance G. Litwack Vitamins and Hormones 1999 Academic Press New York
-
(1999)
Vitamins and Hormones
-
-
Gulnik, S.1
Erickson, J.W.2
Xie, D.3
-
10
-
-
0033921617
-
Phenotypic and genotypic analysis of clinical HIV-1 isolates reveals extensive protease inhibitor cross-resistance: A survey of over 6000 samples
-
K. Hertogs, S. Bloor, S.D. Kemp, C. Van den Eynde, T.M. Alcorn, R. Pauwels, M. Van Houtte, S. Staszewski, V. Miller, and B.A. Larder Phenotypic and genotypic analysis of clinical HIV-1 isolates reveals extensive protease inhibitor cross-resistance a survey of over 6000 samples AIDS 14 2000 1203 1210
-
(2000)
AIDS
, vol.14
, pp. 1203-1210
-
-
Hertogs, K.1
Bloor, S.2
Kemp, S.D.3
Van Den Eynde, C.4
Alcorn, T.M.5
Pauwels, R.6
Van Houtte, M.7
Staszewski, S.8
Miller, V.9
Larder, B.A.10
-
11
-
-
0028014288
-
Characterization of human immunodeficiency virus type 1 variants with increased resistant to a C2-symmetric protease inhibitor
-
D.D. Ho, T. Toyoshima, H. Mo, D.J. Kempf, D. Norbeck, C. Chen, N.E. Wideburg, S.K. Burt, J.W. Erickson, and M.K. Singh Characterization of human immunodeficiency virus type 1 variants with increased resistant to a C2-symmetric protease inhibitor J. Virol. 68 1994 2016 2020
-
(1994)
J. Virol.
, vol.68
, pp. 2016-2020
-
-
Ho, D.D.1
Toyoshima, T.2
Mo, H.3
Kempf, D.J.4
Norbeck, D.5
Chen, C.6
Wideburg, N.E.7
Burt, S.K.8
Erickson, J.W.9
Singh, M.K.10
-
12
-
-
0029775232
-
Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases
-
L. Hong, A. Treharne, J.A. Hartsuck, S. Foundling, and J. Tang Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases Biochemistry 35 1996 10627 10633
-
(1996)
Biochemistry
, vol.35
, pp. 10627-10633
-
-
Hong, L.1
Treharne, A.2
Hartsuck, J.A.3
Foundling, S.4
Tang, J.5
-
13
-
-
0031022510
-
Cyclic urea amides: HIV-1 protease inhibitors with low nanomolar potency against both wild type and protease inhibitor resistant mutants of HIV
-
P.K. Jadhav, P. Ala, F.J. Woerner, C.H. Chang, and S.S. Garber Cyclic urea amides HIV-1 protease inhibitors with low nanomolar potency against both wild type and protease inhibitor resistant mutants of HIV J. Med. Chem. 40 1997 181 191
-
(1997)
J. Med. Chem.
, vol.40
, pp. 181-191
-
-
Jadhav, P.K.1
Ala, P.2
Woerner, F.J.3
Chang, C.H.4
Garber, S.S.5
-
14
-
-
0028286025
-
Selection of multiple human immunodeficiency virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease
-
A.H. Kaplan, S.F. Michael, R.S. Wehbie, M.F. Knigge, D.A. Paul, L. Everitt, D.J. Kempf, D.W. Norbeck, and J.W. Erickson Selection of multiple human immunodeficiency virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease Proc. Natl. Acad. Sci. USA 91 1994 5597 5601
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5597-5601
-
-
Kaplan, A.H.1
Michael, S.F.2
Wehbie, R.S.3
Knigge, M.F.4
Paul, D.A.5
Everitt, L.6
Kempf, D.J.7
Norbeck, D.W.8
Erickson, J.W.9
-
15
-
-
15844378825
-
Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays
-
M.J. Kozal, N. Shah, N. Shen, R. Yang, R. Fucini, T.C. Merigan, D.D. Richman, D. Morris, E. Hubbell, M. Chee, and T.R. Gingeras Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays Nat. Med. 2 1996 753 759
-
(1996)
Nat. Med.
, vol.2
, pp. 753-759
-
-
Kozal, M.J.1
Shah, N.2
Shen, N.3
Yang, R.4
Fucini, R.5
Merigan, T.C.6
Richman, D.D.7
Morris, D.8
Hubbell, E.9
Chee, M.10
Gingeras, T.R.11
-
16
-
-
0034461768
-
Drug-like properties and the causes of poor solubility and poor permeability
-
C.A. Lipinski Drug-like properties and the causes of poor solubility and poor permeability J. Pharmacol. Toxicol. Methods 44 2000 235 249
-
(2000)
J. Pharmacol. Toxicol. Methods
, vol.44
, pp. 235-249
-
-
Lipinski, C.A.1
-
17
-
-
0031024171
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
C.A. Lipinski, F. Lombardo, B.W. Dominy, and P.J. Feeney Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings Adv. Drug Delivery Rev. 23 1997 3 25
-
(1997)
Adv. Drug Delivery Rev.
, vol.23
, pp. 3-25
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
18
-
-
0036836538
-
Structural parameterization of the binding enthalpy of small ligands
-
I. Luque, and E. Freire Structural parameterization of the binding enthalpy of small ligands Proteins 49 2002 181 190
-
(2002)
Proteins
, vol.49
, pp. 181-190
-
-
Luque, I.1
Freire, E.2
-
19
-
-
0032574705
-
The molecular basis of resistance to HIV-1 protease inhibition: A plausible hypothesis
-
I. Luque, M.J. Todd, J. Gomez, N. Semo, and E. Freire The molecular basis of resistance to HIV-1 protease inhibition a plausible hypothesis Biochemistry 37 1998 5791 5797
-
(1998)
Biochemistry
, vol.37
, pp. 5791-5797
-
-
Luque, I.1
Todd, M.J.2
Gomez, J.3
Semo, N.4
Freire, E.5
-
20
-
-
0037469148
-
A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance
-
S. Muzammil, P. Ross, and E. Freire A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance Biochemistry 42 2003 631 638
-
(2003)
Biochemistry
, vol.42
, pp. 631-638
-
-
Muzammil, S.1
Ross, P.2
Freire, E.3
-
21
-
-
0036078615
-
Overcoming drug resistance in HIV-1 chemotherapy: The binding thermodynamics of amprenavir and TMC-126 to wild type and drug-resistant mutants of the HIV-1 protease
-
H. Ohtaka, A. Velazquez-Campoy, D. Xie, and E. Freire Overcoming drug resistance in HIV-1 chemotherapy the binding thermodynamics of amprenavir and TMC-126 to wild type and drug-resistant mutants of the HIV-1 protease Protein Sci. 11 2002 1908 1916
-
(2002)
Protein Sci.
, vol.11
, pp. 1908-1916
-
-
Ohtaka, H.1
Velazquez-Campoy, A.2
Xie, D.3
Freire, E.4
-
22
-
-
0344823654
-
Multi drug-resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations
-
H. Ohtaka, A. Schon, and E. Freire Multi drug-resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations Biochemistry 42 2003 13659 13666
-
(2003)
Biochemistry
, vol.42
, pp. 13659-13666
-
-
Ohtaka, H.1
Schon, A.2
Freire, E.3
-
23
-
-
0033588178
-
Non-active site changes elicit broad-based cross-resistance of the HIV-1 protease to inhibitors
-
D.B. Olsen, M.W. Stahlhut, C.A. Rutkowski, H.B. Schock, A.L. vanOlden, and L.C. Kuo Non-active site changes elicit broad-based cross-resistance of the HIV-1 protease to inhibitors J. Biol. Chem. 274 1999 23699 23701
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 23699-23701
-
-
Olsen, D.B.1
Stahlhut, M.W.2
Rutkowski, C.A.3
Schock, H.B.4
Vanolden, A.L.5
Kuo, L.C.6
-
24
-
-
1542376702
-
Antiretroviral drug resistance in non-subtype B HIV-1, HIV-2 and SIV
-
N.T. Parkin, and J.M. Schapiro Antiretroviral drug resistance in non-subtype B HIV-1, HIV-2 and SIV Antiviral Ther. 9 2004 3 12
-
(2004)
Antiviral Ther.
, vol.9
, pp. 3-12
-
-
Parkin, N.T.1
Schapiro, J.M.2
-
25
-
-
0036268538
-
Human immunodeficiency virus type 2
-
J.D. Reeves, and R.W. Doms Human immunodeficiency virus type 2 J. Gen. Virol. 83 2002 1253 1265
-
(2002)
J. Gen. Virol.
, vol.83
, pp. 1253-1265
-
-
Reeves, J.D.1
Doms, R.W.2
-
26
-
-
0029614884
-
Drug-resistance patterns of saquinavir and other HIV proteinase inhibitors
-
N.A. Roberts Drug-resistance patterns of saquinavir and other HIV proteinase inhibitors AIDS 9 1995 S27 S32
-
(1995)
AIDS
, vol.9
-
-
Roberts, N.A.1
-
27
-
-
0141672041
-
The binding of HIV-1 protease inhibitors to human serum proteins
-
A. Schon, M. Ingaramo, and E. Freire The binding of HIV-1 protease inhibitors to human serum proteins Biophys. Chem. 105 2003 221 230
-
(2003)
Biophys. Chem.
, vol.105
, pp. 221-230
-
-
Schon, A.1
Ingaramo, M.2
Freire, E.3
-
28
-
-
0032904487
-
Sequence and drug susceptibility of subtype C protease from human immunodeficiency virus type I seroconverters in Zimbabwe
-
R.W. Shafer, T.K. Chuang, P. Hsu, C.B. White, and D.A. Katzenstein Sequence and drug susceptibility of subtype C protease from human immunodeficiency virus type I seroconverters in Zimbabwe AIDS Res. Human Retroviruses 15 1999 65 69
-
(1999)
AIDS Res. Human Retroviruses
, vol.15
, pp. 65-69
-
-
Shafer, R.W.1
Chuang, T.K.2
Hsu, P.3
White, C.B.4
Katzenstein, D.A.5
-
29
-
-
0034601808
-
The thermodynamic basis of resistance to HIV-1 protease inhibition. Calorimetric analysis of the V82F/I84V active site resistant mutant
-
M.J. Todd, I. Luque, A. Velazquez-Campoy, and E. Freire The thermodynamic basis of resistance to HIV-1 protease inhibition. Calorimetric analysis of the V82F/I84V active site resistant mutant Biochemistry 39 2000 11876 11883
-
(2000)
Biochemistry
, vol.39
, pp. 11876-11883
-
-
Todd, M.J.1
Luque, I.2
Velazquez-Campoy, A.3
Freire, E.4
-
30
-
-
2442558308
-
A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease
-
S. Vega, L.W. Kang, A. Velazquez-Campoy, Y. Kiso, L.M. Amzel, and E. Freire A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease Proteins 55 2004 594 602
-
(2004)
Proteins
, vol.55
, pp. 594-602
-
-
Vega, S.1
Kang, L.W.2
Velazquez-Campoy, A.3
Kiso, Y.4
Amzel, L.M.5
Freire, E.6
-
31
-
-
0036166136
-
Incorporating target heterogeneity in drug design
-
A. Velazquez-Campoy, and E. Freire Incorporating target heterogeneity in drug design J. Cell. Biochem. S37 2001 82 88
-
(2001)
J. Cell. Biochem.
, vol.37
, pp. 82-88
-
-
Velazquez-Campoy, A.1
Freire, E.2
-
32
-
-
0033815251
-
Thermodynamic dissection of the binding energetics of KNI-272, a powerful HIV-1 protease inhibitor
-
A. Velazquez-Campoy, I. Luque, M.J. Todd, M. Milutinovich, Y. Kiso, and E. Freire Thermodynamic dissection of the binding energetics of KNI-272, a powerful HIV-1 protease inhibitor Protein Sci. 9 2000 1801 1809
-
(2000)
Protein Sci.
, vol.9
, pp. 1801-1809
-
-
Velazquez-Campoy, A.1
Luque, I.2
Todd, M.J.3
Milutinovich, M.4
Kiso, Y.5
Freire, E.6
-
33
-
-
0034093758
-
HIV-1 protease inhibitors: Enthalpic versus entropic optimization of the binding affinity
-
A. Velazquez-Campoy, M.J. Todd, and E. Freire HIV-1 protease inhibitors enthalpic versus entropic optimization of the binding affinity Biochemistry 39 2000 2201 2207
-
(2000)
Biochemistry
, vol.39
, pp. 2201-2207
-
-
Velazquez-Campoy, A.1
Todd, M.J.2
Freire, E.3
-
34
-
-
0035876257
-
The binding energetics of first and second generation HIV-1 protease inhibitors: Implications for drug design
-
A. Velazquez-Campoy, Y. Kiso, and E. Freire The binding energetics of first and second generation HIV-1 protease inhibitors implications for drug design Arch. Biochim. Biophys. 390 2001 169 175
-
(2001)
Arch. Biochim. Biophys.
, vol.390
, pp. 169-175
-
-
Velazquez-Campoy, A.1
Kiso, Y.2
Freire, E.3
-
35
-
-
0035861396
-
The application of thermodynamic methods in drug design
-
A. Velazquez-Campoy, I. Luque, and E. Freire The application of thermodynamic methods in drug design Thermochim. Acta 380 2001 217 227
-
(2001)
Thermochim. Acta
, vol.380
, pp. 217-227
-
-
Velazquez-Campoy, A.1
Luque, I.2
Freire, E.3
-
36
-
-
2942625029
-
The use of isothermal titration calorimetry in drug design: Applications to high affinity binding and protonation/deprotonation coupling
-
A. Velazquez-Campoy, I. Luque, and E. Freire The use of isothermal titration calorimetry in drug design applications to high affinity binding and protonation/deprotonation coupling Netsu Sokutei 28 2001 68 73
-
(2001)
Netsu Sokutei
, vol.28
, pp. 68-73
-
-
Velazquez-Campoy, A.1
Luque, I.2
Freire, E.3
-
38
-
-
0037047028
-
Amplification of the effects of drug-resistance mutations by background polymorphisms in HIV-1 protease from African subtypes
-
A. Velazquez-Campoy, S. Vega, and E. Freire Amplification of the effects of drug-resistance mutations by background polymorphisms in HIV-1 protease from African subtypes Biochemistry 41 2002 8613 8619
-
(2002)
Biochemistry
, vol.41
, pp. 8613-8619
-
-
Velazquez-Campoy, A.1
Vega, S.2
Freire, E.3
-
39
-
-
0347513233
-
Structural and thermodynamic basis of resistance to HIV-1 protease inhibition: Implications for inhibitor design
-
A. Velazquez-Campoy, S. Muzammil, H. Ohtaka, A. Schon, S. Vega, and E. Freire Structural and thermodynamic basis of resistance to HIV-1 protease inhibition implications for inhibitor design Curr. Drug Targets - Infect. Disorders 3 2003 311 328
-
(2003)
Curr. Drug Targets - Infect. Disorders
, vol.3
, pp. 311-328
-
-
Velazquez-Campoy, A.1
Muzammil, S.2
Ohtaka, H.3
Schon, A.4
Vega, S.5
Freire, E.6
-
40
-
-
0242351943
-
Protease inhibition in African subtypes of HIV-1
-
A. Velazquez-Campoy, S. Vega, E. Fleming, U. Bacha, Y. Sayed, H.W. Dirr, and E. Freire Protease inhibition in African subtypes of HIV-1 AIDS Rev. 5 2003 165 171
-
(2003)
AIDS Rev.
, vol.5
, pp. 165-171
-
-
Velazquez-Campoy, A.1
Vega, S.2
Fleming, E.3
Bacha, U.4
Sayed, Y.5
Dirr, H.W.6
Freire, E.7
-
41
-
-
20244387096
-
Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments
-
T.D. Wu, C.A. Schiffer, M.J. Gonzales, J. Taylor, R. Kantor, S. Chou, D. Israelski, A.R. Zolopa, W.J. Fessel, and R.W. Shafer Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments J. Virol. 77 2003 4836 4847
-
(2003)
J. Virol.
, vol.77
, pp. 4836-4847
-
-
Wu, T.D.1
Schiffer, C.A.2
Gonzales, M.J.3
Taylor, J.4
Kantor, R.5
Chou, S.6
Israelski, D.7
Zolopa, A.R.8
Fessel, W.J.9
Shafer, R.W.10
|