-
1
-
-
0031808074
-
A helix propensity scale based on experimental studies of peptides and proteins
-
Pace NC, Scholtz JM. A helix propensity scale based on experimental studies of peptides and proteins. Biophys J 1998;75:422-427.
-
(1998)
Biophys J
, vol.75
, pp. 422-427
-
-
Pace, N.C.1
Scholtz, J.M.2
-
2
-
-
0000159569
-
Protein structure and the energetics of protein stability
-
Robertson AD, Murphy KP. Protein structure and the energetics of protein stability. Chem Rev 1997;97:1251-1267.
-
(1997)
Chem Rev
, vol.97
, pp. 1251-1267
-
-
Robertson, A.D.1
Murphy, K.P.2
-
3
-
-
0033997037
-
Structure-based thermodynamic analysis of the dissociation of protein phosphatase-1 catalytic subunit and microcystin-LR docked complexes
-
Lavigne P, Bagu JR, Boyko R, Willard L, Holmes CFB, Sykes BD. Structure-based thermodynamic analysis of the dissociation of protein phosphatase-1 catalytic subunit and microcystin-LR docked complexes. Prot Sci 2000;9:252-264.
-
(2000)
Prot Sci
, vol.9
, pp. 252-264
-
-
Lavigne, P.1
Bagu, J.R.2
Boyko, R.3
Willard, L.4
Holmes, C.F.B.5
Sykes, B.D.6
-
4
-
-
0034687780
-
Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface
-
Sundberg EJ, Urrutia M, Braden BC, Isern J, Tsuchiya D, Fields BA, Malchiodi EL, Tormo J, Schwarz FP, Mariuzza RA. Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface. Biochemistry 2000;39:15375-15387.
-
(2000)
Biochemistry
, vol.39
, pp. 15375-15387
-
-
Sundberg, E.J.1
Urrutia, M.2
Braden, B.C.3
Isern, J.4
Tsuchiya, D.5
Fields, B.A.6
Malchiodi, E.L.7
Tormo, J.8
Schwarz, F.P.9
Mariuzza, R.A.10
-
5
-
-
0034093758
-
HIV-1 protease inhibitors: Enthalpic versus entropic optimization of the binding affinity
-
Velazquez-Campoy A, Todd MJ, Freire E. HIV-1 protease inhibitors: enthalpic versus entropic optimization of the binding affinity. Biochemistry 2000;39:2201-2207.
-
(2000)
Biochemistry
, vol.39
, pp. 2201-2207
-
-
Velazquez-Campoy, A.1
Todd, M.J.2
Freire, E.3
-
6
-
-
0035876257
-
The binding energetics of first and second generation HIV-1 protease inhibitors: Implications for drug design
-
Velazquez-Campoy A, Kiso Y, Freire E. The binding energetics of first and second generation HIV-1 protease inhibitors: implications for drug design. Arch Biochim Biophys 2001;390:169-175.
-
(2001)
Arch Biochim Biophys
, vol.390
, pp. 169-175
-
-
Velazquez-Campoy, A.1
Kiso, Y.2
Freire, E.3
-
7
-
-
0029957505
-
The enthalpy change in protein folding and binding, refinement of parameters for structure based calculations
-
Hilser VJ, Gomez J, Freire E. The enthalpy change in protein folding and binding, refinement of parameters for structure based calculations. Proteins 1996;26:123-133.
-
(1996)
Proteins
, vol.26
, pp. 123-133
-
-
Hilser, V.J.1
Gomez, J.2
Freire, E.3
-
8
-
-
0027980359
-
Molecular basis of cooperativity in protein folding. V. Thermodynamic and structural conditions for the stabilization of compact denatured states
-
Xie D, Freire E. Molecular basis of cooperativity in protein folding. V. Thermodynamic and structural conditions for the stabilization of compact denatured states. Proteins Struct Func Genet 1994;19: 291-301.
-
(1994)
Proteins Struct Func Genet
, vol.19
, pp. 291-301
-
-
Xie, D.1
Freire, E.2
-
9
-
-
0029080864
-
Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
-
Gomez J, Freire E. Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin. J Mol Biol 1995;252:337-350.
-
(1995)
J Mol Biol
, vol.252
, pp. 337-350
-
-
Gomez, J.1
Freire, E.2
-
10
-
-
0031984455
-
Structure-based thermodynamic design of peptide ligands. Application to peptide inhibitors of the aspartic protease endothiapepsin
-
Luque I, Gomez J, Semo N, Freire E. Structure-based thermodynamic design of peptide ligands. Application to peptide inhibitors of the aspartic protease endothiapepsin. Proteins 1998;30:74-85.
-
(1998)
Proteins
, vol.30
, pp. 74-85
-
-
Luque, I.1
Gomez, J.2
Semo, N.3
Freire, E.4
-
11
-
-
0033975702
-
Structural energetics of protein folding and binding
-
Edgcomb SP, Murphy KP. Structural energetics of protein folding and binding. Curr Opin Biotechnol 2000;11:62-66.
-
(2000)
Curr Opin Biotechnol
, vol.11
, pp. 62-66
-
-
Edgcomb, S.P.1
Murphy, K.P.2
-
12
-
-
0033778163
-
Comparison of binding energetics of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization
-
Henriques DA, Ladbury JE, Jackson RM. Comparison of binding energetics of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization. Prot Sci 2000;9:1975-1985.
-
(2000)
Prot Sci
, vol.9
, pp. 1975-1985
-
-
Henriques, D.A.1
Ladbury, J.E.2
Jackson, R.M.3
-
13
-
-
0033642945
-
The structural stability of binding sites. Consequences for binding affinity and cooperativity
-
Luque I, Freire E. The structural stability of binding sites. Consequences for binding affinity and cooperativity. Proteins 2000;4:63-71.
-
(2000)
Proteins
, vol.4
, pp. 63-71
-
-
Luque, I.1
Freire, E.2
-
14
-
-
0029832524
-
Evaluation of linked protonation effects in protein binding using isothermal titration calorimetry
-
Baker BM, Murphy KP. Evaluation of linked protonation effects in protein binding using isothermal titration calorimetry. Biophys J 1996;71:2049-2055.
-
(1996)
Biophys J
, vol.71
, pp. 2049-2055
-
-
Baker, B.M.1
Murphy, K.P.2
-
15
-
-
0033815251
-
Thermodynamic dissection of the binding energetics of KNI-272, a powerful HIV-1 protease inhibitor
-
Velazquez-Campoy A, Luque I, Todd MJ, Milutinovich M, Kiso Y, Freire E. Thermodynamic dissection of the binding energetics of KNI-272, a powerful HIV-1 protease inhibitor. Prot Sci 2000;9: 1801-1809.
-
(2000)
Prot Sci
, vol.9
, pp. 1801-1809
-
-
Velazquez-Campoy, A.1
Luque, I.2
Todd, M.J.3
Milutinovich, M.4
Kiso, Y.5
Freire, E.6
-
16
-
-
0031804609
-
Inhibitors of HIV-1 protease: A major success of structure-assisted drug design
-
Wlodawer A, Wondrasek J. Inhibitors of HIV-1 protease: a major success of structure-assisted drug design. Annu Rev Biophys Biomol Struct 1998;27:249-284.
-
(1998)
Annu Rev Biophys Biomol Struct
, vol.27
, pp. 249-284
-
-
Wlodawer, A.1
Wondrasek, J.2
-
17
-
-
0034601808
-
The thermodynamic basis of resistance to HIV-1 protease inhibition. Calorimetric analysis of the V82F/I84V active site resistant mutant
-
Todd MJ, Luque I, Velazquez-Campoy A, Freire E. The thermodynamic basis of resistance to HIV-1 protease inhibition. Calorimetric analysis of the V82F/I84V active site resistant mutant. Biochemistry 2000;39:11876-11883.
-
(2000)
Biochemistry
, vol.39
, pp. 11876-11883
-
-
Todd, M.J.1
Luque, I.2
Velazquez-Campoy, A.3
Freire, E.4
-
18
-
-
0037047028
-
Amplification of the effects of drug-resistance mutations by background polymorphisms in HIV-1 protease from African subtypes
-
Velazquez-Campoy A, Vega S, Freire E. Amplification of the effects of drug-resistance mutations by background polymorphisms in HIV-1 protease from African subtypes. Biochemistry 2002;41:8613-8619.
-
(2002)
Biochemistry
, vol.41
, pp. 8613-8619
-
-
Velazquez-Campoy, A.1
Vega, S.2
Freire, E.3
-
19
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B, Richards FM. The interpretation of protein structures: estimation of static accessibility. J Mol Biol 1971;55:379-400.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
20
-
-
0030474628
-
Bound water molecules at the interface between the HIV-1 protease and a potent inhibitor, KNI-272, determined by NMR
-
Wang YX, Freedberg DI, Wingfield PT, Stahl SJ, Kaufman JD, Kiso Y, Bhat TN, Erickson JW, Torchia DA. Bound water molecules at the interface between the HIV-1 protease and a potent inhibitor, KNI-272, determined by NMR. J Am Chem Soc 1996;118: 12287-12290.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 12287-12290
-
-
Wang, Y.X.1
Freedberg, D.I.2
Wingfield, P.T.3
Stahl, S.J.4
Kaufman, J.D.5
Kiso, Y.6
Bhat, T.N.7
Erickson, J.W.8
Torchia, D.A.9
-
21
-
-
0035442411
-
Direct measurement of protein binding energetics by isothermal titration calorimetry
-
Leavitt S, Freire E. Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr Opin Struct Biol 2001;11:560-566.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 560-566
-
-
Leavitt, S.1
Freire, E.2
-
22
-
-
0029820832
-
Interaction of pyridine nucleotide substrates with Escherichia coli dyhydrodipicolinate reductase: Thermodynamic and structural analysis of binary complexes
-
Reddy SG, Scapin G, Blanchard TS. Interaction of pyridine nucleotide substrates with Escherichia coli dyhydrodipicolinate reductase: thermodynamic and structural analysis of binary complexes. Biochemistry 1996;35:13294-13302.
-
(1996)
Biochemistry
, vol.35
, pp. 13294-13302
-
-
Reddy, S.G.1
Scapin, G.2
Blanchard, T.S.3
-
23
-
-
0000777318
-
Thermodynamic of binding of mononucleotides to ribonuclease T1
-
Hu C, Sturtevant JM. Thermodynamic of binding of mononucleotides to ribonuclease T1. J Phys Chem 1992;96:4052-4056.
-
(1992)
J Phys Chem
, vol.96
, pp. 4052-4056
-
-
Hu, C.1
Sturtevant, J.M.2
-
24
-
-
0026606240
-
Crystallographic and thermodynamic comparison of natural and synthetic ligands bound to streptavidin
-
Weber PC, Wendoloski JJ, Pantoliano MW, Salemme FR. Crystallographic and thermodynamic comparison of natural and synthetic ligands bound to streptavidin. J Am Chem Soc 1992;114: 3197-3200.
-
(1992)
J Am Chem Soc
, vol.114
, pp. 3197-3200
-
-
Weber, P.C.1
Wendoloski, J.J.2
Pantoliano, M.W.3
Salemme, F.R.4
-
26
-
-
0000548761
-
Crystallographic and thermodynamic comparison of structurally diverse molecules binding to streptavidin
-
Weber PC, Pantoliano MW, Salemme FR. Crystallographic and thermodynamic comparison of structurally diverse molecules binding to streptavidin. Acta Cryst. 1995;D52:590-596.
-
(1995)
Acta Cryst
, vol.D52
, pp. 590-596
-
-
Weber, P.C.1
Pantoliano, M.W.2
Salemme, F.R.3
-
27
-
-
0030993172
-
c-Src domains: A thermodynamic and structural study
-
c-Src domains: a thermodynamic and structural study. Biochemistry 1997;36:6283-6293.
-
(1997)
Biochemistry
, vol.36
, pp. 6283-6293
-
-
Charifson, P.S.1
Shewchuk, L.M.2
Rocque, W.3
Hummel, C.W.4
Jordan, S.R.5
Mohr, C.6
Pacofsky, G.J.7
Peel, M.R.8
Rodriguez, M.9
Sternbach, D.D.10
Consler, T.G.11
-
28
-
-
0032959590
-
Structural basis for inhibition of the Hsp90 molecular chaperone by the antitumor antibiotics Radicicol and Geldanamycin
-
Roe SM, Prodromou C, O'Brien R, Ladbury JE, Piper PW, Pearl LH. Structural basis for inhibition of the Hsp90 molecular chaperone by the antitumor antibiotics Radicicol and Geldanamycin. J Med Chem 1999;42:260-266.
-
(1999)
J Med Chem
, vol.42
, pp. 260-266
-
-
Roe, S.M.1
Prodromou, C.2
O'Brien, R.3
Ladbury, J.E.4
Piper, P.W.5
Pearl, L.H.6
-
29
-
-
0035955550
-
Factorising ligand affinity: A combined thermodynamic and crystallographic study of trypsin and thrombin inhibition
-
Dullweber F, Stubbs MT, Musil D, Sturzebecher J, Klebe G. Factorising ligand affinity: a combined thermodynamic and crystallographic study of trypsin and thrombin inhibition. J Mol Biol 2001;313:593-614.
-
(2001)
J Mol Biol
, vol.313
, pp. 593-614
-
-
Dullweber, F.1
Stubbs, M.T.2
Musil, D.3
Sturzebecher, J.4
Klebe, G.5
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