RNA-interference-based functional genomics in mammalian cells: Reverse genetics coming of age

Oncogene

Volumn 23, Issue 51 REV. ISS. 8, 2004, Pages 8401-8409

  Silva, Jose ^a   Chang, Kenneth ^a   Hannon, Gregory J ^a   Rivas, Fabiola V ^a  

^a Simons Center for Quantitative Biology   (United States)

Author keywords

Apoptosis; Cancer; Functional genomics; High throughput screening; RNAi; Synthetic lethality

Indexed keywords

RNA; SHORT HAIRPIN RNA; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

AGE DISTRIBUTION; CANCER GENETICS; CANCER THERAPY; CELL TRANSFORMATION; GENE IDENTIFICATION; GENE SEQUENCE; GENE SILENCING; GENETIC POLYMORPHISM; GENETIC STABILITY; GENETICS; GENOMICS; HUMAN; MAMMAL CELL; MOLECULAR GENETICS; PRIORITY JOURNAL; REVIEW; RNA INTERFERENCE; RNA INTERFERENCE BASED FUNCTIONAL GENOMICS;

ANIMALS; GENE LIBRARY; GENOMICS; HUMANS; RNA INTERFERENCE;

MAMMALIA;

EID: 9144273425     PISSN: 09509232     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.onc.1208176     Document Type: Review

References (42)

1. Aravind L, Dixit VM and Koonin EV. (2001). Science, 291, 1279-1284.
2. Aza-Blanc P, Cooper CL, Wagner K, Batalov S, Deveraux QL and Cooke MP. (2003). Mol. Cell, 12, 627-637.
3. Basson ME, Moore RL, O'Rear J and Rine J. (1987). Genetics, 117, 645-655.
4. Bender A and Pringle JR. (1991). Mol. Cell Biol., 11, 1295-1305.
5. Berns K, Hijmans EM, Mullenders J, Brummelkamp TR, Velds A, Heimerikx M, Kerkhoven RM, Madiredjo M, Nijkamp W, Weigelt B, Agami R, Ge W, Cavet G, Linsley PS, Beijersbergen RL and Bernards R. (2004). Nature, 428, 431-437.
6. Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Consortium HF, Paro R and Perrimon N. (2004). Science, 303, 832-835.
7. Brummelkamp TR, Nijman SM, Dirac AM and Bernards R. (2003). Nature, 424, 797-801.
8. Celera Genomics Project (2001). Science, 291, 1304-1351.
9. Chen Z and Han M. (2000). Bioessays, 22, 503-506.
10. Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M, Linehan WM, Knezevic V and Emmert-Buck MR. (2002). Nat. Genet., 32 (Suppl), 509-514.
11. Churchill GA. (2002). Nat. Genet., 32 (Suppl), 490-495.
12. Clemens JC, Worby CA, Simonson-Leff N, Muda M, Maehama T, Hemmings BA and Dixon JE. (2000). Proc. Natl. Acad. Sci., 97, 6499-6503.
13. Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuveglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisrame A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wesolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P and Souciet JL. (2004). Nature, 430, 35-44.
14. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K and Tuschl T. (2001). Nature, 411, 494-498.
15. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE and Mello CC. (1998). Nature, 391, 806-811.
16. Forsburg SL. (2001). Nat. Rev. Genet., 2, 659-668.
17. Forster T, Roy D and Ghazal P. (2003). J. Endocrinol., 178, 195-204.
18. Glass B. (1954). Adv. Genet., 6, 95-139.
19. Hannon GJ. (2002). Nature, 418, 244-251.
20. Harborth J, Elbashir SM, Bechert K, Tuschl T and Weber K. (2001). J. Cell Sci., 114, 4557-4565.
21. Hsieh AC, Bo R, Manola J, Vazquez F, Bare O, Khvorova A, Scaringe S and Sellers WR. (2004). Nucleic Acids Res., 32, 893-901.
22. Huang Q, Raya A, DeJesus P, Chao SH, Quon KC, Caldwell JS, Chanda SK, Izpisua-Belmonte JC and Schultz PG. (2004). Proc. Natl. Acad. Sci., 101, 3456-3461.
23. International Human Genome Sequencing Consortium (2001). Nature, 409, 860-921.
24. Jorgensen EM and Mango SE. (2002). Nat. Rev. Genet., 3, 356-369.
25. Kumar R, Conklin DS and Mittal V. (2003). Genome Res., 13, 2333-2340.
26. Manche L, Green SR, Schmedt C and Mathews MB. (1992). Mol. Cell Biol., 12, 5238-5248.
27. Michiels F, van Es H, van Rompaey L, Merchiers P, Francken B, Pittois K, van der Schueren J, Brys R, Vandersmissen J, Beirinckx F, Herman S, Dokic K, Klaassen H, Narinx E, Hagers A, Laenen W, Piest I, Pavliska H, Rombout Y, Langemeijer E, Ma L, Schipper C, Raeymaeker MD, Schweicher S, Jans M, van Beeck K, Tsang IR, van de Stolpe O, Tomme P, Arts GJ and Donker J. (2002). Nat. Biotechnol., 20, 1154-1157.
28. Mikkers H and Berns A. (2003). Adv. Cancer Res., 88, 53-99.
29. Minks MA, West DK, Benvin S and Baglioni C. (1979). J. Biol. Chem., 254, 10180-10183.
30. Montgomery MK. (2004). Methods Mol. Biol., 265, 3-21.
31. Mousses S, Caplen NJ, Cornelison R, Weaver D, Basik M, Hautaniemi S, Elkahloun AG, Lotufo RA, Choudary A, Dougherty ER, Suh E and Kallioniemi O. (2003). Genome Res., 13, 2341-2347.
32. Paddison PJ and Hannon GJ. (2002). Cancer Cell, 2, 17-23. RNA interference: the new somatic cell genetics?.
33. Paddison PJ and Hannon GJ. (2003). Curr. Opin. Mol. Ther., 5, 217-224.
34. Paddison PJ, Silva JM, Conklin DS, Schlabach M, Li M, Aruleba S, Balija V, O'Shaughnessy A, Gnoj L, Scobie K, Chang K, Westbrook T, Cleary M, Sachidanandam R, McCombie WR, Elledge SJ and Hannon GJ. (2004). Nature, 428, 427-431.
35. Shoemaker DD, Lashkari DA, Morris D, Mittmann M and Davis RW. (1996). Nat. Genet., 14, 450-456.
36. Shuman HA and Silhavy TJ. (2003). Nat. Rev. Genet., 4, 419-431.
37. Silva JM, Mizuno H, Brady A, Lucito R and Hannon GJ. (2004). Proc. Natl. Acad. Sci., 101, 6548-6552.
38. Somma MP, Fasulo B, Cenci G, Cundari E and Gatti M. (2002). Mol. Biol. Cell, 13, 2448-2460.
39. St Johnston D. (2002). Nat. Rev. Genet., 3, 176-188.
40. Tabara H, Grishok A and Mello CC. (1998). Science, 282, 430-431.
41. Timmons L and Fire A. (1998). Nature, 395, 854.
42. Ziauddin J and Sabatini DM. (2001). Nature, 411, 107-110.