-
1
-
-
84996615290
-
'Mining bacterial genomes for secondary metabolite gene clusters'
-
ed. P. Sass (New York, NY: Humana Press)
-
Adamek, M., Spohn, M., Stegmann, E., and Ziemert, N. (2017). 'Mining bacterial genomes for secondary metabolite gene clusters'. in Antibiotics, Methods in Molecular Biology, ed P. Sass (New York, NY: Humana Press), 23-47
-
(2017)
Antibiotics, Methods in Molecular Biology
, pp. 23-47
-
-
Adamek, M.1
Spohn, M.2
Stegmann, E.3
Ziemert, N.4
-
2
-
-
0036205874
-
Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER
-
Aggarwal, G., and Ramaswamy, R. (2002). Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER. J. Biosci. 27, 7-14. doi: 10.1007/BF02703679
-
(2002)
J. Biosci
, vol.27
, pp. 7-14
-
-
Aggarwal, G.1
Ramaswamy, R.2
-
3
-
-
76549098527
-
Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments
-
Albarracin, V. H., Alonso-Vega, P., Trujillo, M. E., Amoroso, M. J., and Abate, C. M. (2010). Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments. Int. J. Syst. Evol. Microbiol. 60, 397-401. doi: 10.1099/ijs.0.010587-0
-
(2010)
Int. J. Syst. Evol. Microbiol
, vol.60
, pp. 397-401
-
-
Albarracin, V.H.1
Alonso-Vega, P.2
Trujillo, M.E.3
Amoroso, M.J.4
Abate, C.M.5
-
4
-
-
84962127968
-
Understanding microbial multi-species symbioses
-
Aschenbrenner, I. A., Cernava, T., Berg, G., and Grube, M. (2016). Understanding microbial multi-species symbioses. Front. Microbiol. 7:180. doi: 10.3389/fmicb.2016.00180
-
(2016)
Front. Microbiol
, vol.7
, pp. 180
-
-
Aschenbrenner, I.A.1
Cernava, T.2
Berg, G.3
Grube, M.4
-
5
-
-
77952891913
-
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
-
Auch, A. F., von Jan, M., Klenk, H. P., and Göker, M. (2010). Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand. Genomic Sci. 2, 117-134. doi: 10.4056/sigs.531120
-
(2010)
Stand. Genomic Sci
, vol.2
, pp. 117-134
-
-
Auch, A.F.1
von Jan, M.2
Klenk, H.P.3
Göker, M.4
-
6
-
-
84964054525
-
Taxonomy, physiology, and natural products of actinobacteria
-
Barka, E. A., Vatsa, P., Sanchez, L., Gaveau-vaillant, N., Jacquard, C., Klenk, H. P., et al. (2016). Taxonomy, physiology, and natural products of actinobacteria. Microbiol. Mol. Biol. Rev. 80, 1-43. doi: 10.1128/MMBR.00019-15
-
(2016)
Microbiol. Mol. Biol. Rev
, vol.80
, pp. 1-43
-
-
Barka, E.A.1
Vatsa, P.2
Sanchez, L.3
Gaveau-vaillant, N.4
Jacquard, C.5
Klenk, H.P.6
-
7
-
-
85014644235
-
Macrotermycins A-D, glycosylated macrolactams from a termite-associated Amycolatopsis sp
-
Beemelmanns, C., Ramadhar, T. R., Kim, K. H., Klassen, J. L., Cao, S., Wyche, T. P., et al. (2017). Macrotermycins A-D, glycosylated macrolactams from a termite-associated Amycolatopsis sp. M39. Org. Lett. 19, 1000-1003. doi: 10.1021/acs.orglett.6b03831
-
(2017)
M39. Org. Lett
, vol.19
, pp. 1000-1003
-
-
Beemelmanns, C.1
Ramadhar, T.R.2
Kim, K.H.3
Klassen, J.L.4
Cao, S.5
Wyche, T.P.6
-
8
-
-
85020822860
-
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
-
Blin, K., Wolf, T., Chevrette, M. G., Lu, X., Schwalen, C. J., Kautsar, S. A., et al. (2017). antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Res. 1-6. doi: 10.1093/nar/gkx319
-
(2017)
Nucleic Acids Res
, pp. 1-6
-
-
Blin, K.1
Wolf, T.2
Chevrette, M.G.3
Lu, X.4
Schwalen, C.J.5
Kautsar, S.A.6
-
9
-
-
0034930476
-
Amphotericin biosynthesis in Streptomyces nodosus: deductions from analysis of polyketide synthase and late genes
-
Caffrey, P., Lynch, S., Flood, E., Finnan, S., and Oliynyk, M. (2001). Amphotericin biosynthesis in Streptomyces nodosus: deductions from analysis of polyketide synthase and late genes. Chem. Biol. 8, 713-723. doi: 10.1016/S1074-5521(01)00046-1
-
(2001)
Chem. Biol
, vol.8
, pp. 713-723
-
-
Caffrey, P.1
Lynch, S.2
Flood, E.3
Finnan, S.4
Oliynyk, M.5
-
10
-
-
85043319146
-
Secondary metabolism in the lichen symbiosis
-
[Epub ahead of print]
-
Calcott, M. J., Ackerley, D. F., Knight, A., Keyzers, R. A., and Owen, J. G. (2017). Secondary metabolism in the lichen symbiosis. Chem. Soc. Rev. doi: 10.1039/c7cs00431a. [Epub ahead of print]
-
(2017)
Chem. Soc. Rev
-
-
Calcott, M.J.1
Ackerley, D.F.2
Knight, A.3
Keyzers, R.A.4
Owen, J.G.5
-
11
-
-
33746895154
-
Molecular analysis of lichen-associated bacterial communities
-
Cardinale, M., Puglia, A. M., and Grube, M. (2006). Molecular analysis of lichen-associated bacterial communities. FEMS Microbiol. Ecol. 57, 484-495. doi: 10.1111/j.1574-6941.2006.00133.x
-
(2006)
FEMS Microbiol. Ecol
, vol.57
, pp. 484-495
-
-
Cardinale, M.1
Puglia, A.M.2
Grube, M.3
-
12
-
-
84955205313
-
Progress in understanding the genetic information and biosynthetic pathways behind Amycolatopsis antibiotics, with implications for the continued discovery of novel drugs
-
Chen, S., Wu, Q., Shen, Q., and Wang, H. (2016). Progress in understanding the genetic information and biosynthetic pathways behind Amycolatopsis antibiotics, with implications for the continued discovery of novel drugs. ChemBioChem. 17, 119-128. doi: 10.1002/cbic.201500542
-
(2016)
ChemBioChem
, vol.17
, pp. 119-128
-
-
Chen, S.1
Wu, Q.2
Shen, Q.3
Wang, H.4
-
13
-
-
84904554933
-
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
-
Cimermancic, P., Medema, M. H., Claesen, J., Kurita, K., Wieland Brown, L. C., Mavrommatis, K., et al. (2014). Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell 158, 412-421. doi: 10.1016/j.cell.2014.06.034
-
(2014)
Cell
, vol.158
, pp. 412-421
-
-
Cimermancic, P.1
Medema, M.H.2
Claesen, J.3
Kurita, K.4
Wieland Brown, L.C.5
Mavrommatis, K.6
-
14
-
-
84920901632
-
Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case
-
Colston, S. M., Fullmer, M. S., Beka, L., Lamy, B., Peter Gogarten, J., and Graf, J. (2014). Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case. MBio 5, 1-13. doi: 10.1128/mBio.02136-14
-
(2014)
MBio
, vol.5
, pp. 1-13
-
-
Colston, S.M.1
Fullmer, M.S.2
Beka, L.3
Lamy, B.4
Peter Gogarten, J.5
Graf, J.6
-
15
-
-
77956193448
-
ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
-
Darling, A. E., Mau, B., and Perna, N. T. (2010). ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement. PLOS ONE 5:e11147. doi: 10.1371/journal.pone.0011147
-
(2010)
PLOS ONE
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
16
-
-
84902656309
-
Current biotechnological applications of the genus Amycolatopsis
-
Dávila Costa, J. S., and Amoroso, M. J. (2014). Current biotechnological applications of the genus Amycolatopsis. World J. Microbiol. Biotechnol. 30, 1919-1926. doi: 10.1007/s11274-014-1622-3
-
(2014)
World J. Microbiol. Biotechnol
, vol.30
, pp. 1919-1926
-
-
Dávila Costa, J.S.1
Amoroso, M.J.2
-
17
-
-
57149083866
-
The use of gyrB sequence analysis in the phylogeny of the genus Amycolatopsis
-
Everest, G. J., and Meyers, P. R. (2009). The use of gyrB sequence analysis in the phylogeny of the genus Amycolatopsis. Antonie Van Leeuwenhoek 95, 1-11. doi: 10.1007/s10482-008-9280-9
-
(2009)
Antonie Van Leeuwenhoek
, vol.95
, pp. 1-11
-
-
Everest, G.J.1
Meyers, P.R.2
-
18
-
-
79960564561
-
Evaluation of the antibiotic biosynthetic potential of the genus Amycolatopsis and description of Amycolatopsis circi sp. nov., Amycolatopsis equina sp. nov. and Amycolatopsis hippodromi sp. nov
-
Everest, G. J., and Meyers, P. R. (2011). Evaluation of the antibiotic biosynthetic potential of the genus Amycolatopsis and description of Amycolatopsis circi sp. nov., Amycolatopsis equina sp. nov. and Amycolatopsis hippodromi sp. nov. J. Appl. Microbiol. 111, 300-311. doi: 10.1111/j.1365-2672.2011.05058.x
-
(2011)
J. Appl. Microbiol
, vol.111
, pp. 300-311
-
-
Everest, G.J.1
Meyers, P.R.2
-
19
-
-
0343179044
-
New species of Streptothrix isolated from the air
-
Foulerton, A. (1905). New species of Streptothrix isolated from the air. Lancet 1, 1199-1200
-
(1905)
Lancet
, vol.1
, pp. 1199-1200
-
-
Foulerton, A.1
-
20
-
-
85031823683
-
Actinomycetes: still a source of novel antibiotics
-
Genilloud, O. (2017a). Actinomycetes: still a source of novel antibiotics. Nat. Prod. Rep. 34, 1203-1232. doi: 10.1039/C7NP00026J
-
(2017)
Nat. Prod. Rep
, vol.34
, pp. 1203-1232
-
-
Genilloud, O.1
-
21
-
-
85042459034
-
'Physiology of actinobacteria'
-
eds J. Wink, F. Mohammadipanah, and J. Hamedi (Cham: Springer)
-
Genilloud, O. (2017b). 'Physiology of actinobacteria'. in Biology and Biotechnology of Actinobacteria, eds J. Wink, F. Mohammadipanah, and J. Hamedi (Cham: Springer), 151-180
-
(2017)
Biology and Biotechnology of Actinobacteria
, pp. 151-180
-
-
Genilloud, O.1
-
22
-
-
79955716262
-
Current approaches to exploit actinomycetes as a source of novel natural products
-
Genilloud, O., González, I., Salazar, O., Martín, J., Tormo, J. R., and Vicente, F. (2011). Current approaches to exploit actinomycetes as a source of novel natural products. J. Ind. Microbiol. Biotechnol. 38, 375-389. doi: 10.1007/s10295-010-0882-7
-
(2011)
J. Ind. Microbiol. Biotechnol
, vol.38
, pp. 375-389
-
-
Genilloud, O.1
González, I.2
Salazar, O.3
Martín, J.4
Tormo, J.R.5
Vicente, F.6
-
23
-
-
84861568080
-
Isolation, structure elucidation, and biosynthesis of an unusual hydroxamic acid ester-containing siderophore from Actinosynnema mirum
-
Giessen, T. W., Franke, K. B., Knappe, T. A., Kraas, F. I., Bosello, M., Xie, X., et al. (2012). Isolation, structure elucidation, and biosynthesis of an unusual hydroxamic acid ester-containing siderophore from Actinosynnema mirum. J. Nat. Prod. 75, 905-914. doi: 10.1021/np300046k
-
(2012)
J. Nat. Prod
, vol.75
, pp. 905-914
-
-
Giessen, T.W.1
Franke, K.B.2
Knappe, T.A.3
Kraas, F.I.4
Bosello, M.5
Xie, X.6
-
24
-
-
84983143193
-
Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
-
Glaeser, S. P., and Kämpfer, P. (2015). Multilocus sequence analysis (MLSA) in prokaryotic taxonomy. Syst. Appl. Microbiol. 38, 237-245. doi: 10.1016/j.syapm.2015.03.007
-
(2015)
Syst. Appl. Microbiol
, vol.38
, pp. 237-245
-
-
Glaeser, S.P.1
Kämpfer, P.2
-
25
-
-
26244450606
-
Actinomycetes isolated from lichens: evaluation of their diversity and detection of biosynthetic gene sequences
-
González, I., Ayuso-Sacido, A., Anderson, A., and Genilloud, O. (2005). Actinomycetes isolated from lichens: evaluation of their diversity and detection of biosynthetic gene sequences. FEMS Microbiol. Ecol. 54, 401-415. doi: 10.1016/j.femsec.2005.05.004
-
(2005)
FEMS Microbiol. Ecol
, vol.54
, pp. 401-415
-
-
González, I.1
Ayuso-Sacido, A.2
Anderson, A.3
Genilloud, O.4
-
26
-
-
2442671961
-
Identification of the Entner-Doudoroff pathway in an antibiotic-producing actinomycete species
-
Gunnarsson, N., Mortensen, U. H., Sosio, M., and Nielsen, J. (2004). Identification of the Entner-Doudoroff pathway in an antibiotic-producing actinomycete species. Mol. Microbiol. 52, 895-902. doi: 10.1111/j.1365-2958.2004.04028.x
-
(2004)
Mol. Microbiol
, vol.52
, pp. 895-902
-
-
Gunnarsson, N.1
Mortensen, U.H.2
Sosio, M.3
Nielsen, J.4
-
27
-
-
77956519355
-
GenoPlotR: comparative gene and genome visualization in R
-
Guy, L., Kultima, J. R., Andersson, S. G. E., and Quackenbush, J. (2011). GenoPlotR: comparative gene and genome visualization in R. Bioinformatics 27, 2334-2335. doi: 10.1093/bioinformatics/btq413
-
(2011)
Bioinformatics
, vol.27
, pp. 2334-2335
-
-
Guy, L.1
Kultima, J.R.2
Andersson, S.G.E.3
Quackenbush, J.4
-
28
-
-
84871462006
-
Systematic and biotechnological aspects of halophilic and halotolerant actinomycetes
-
Hamedi, J., Mohammadipanah, F., and Ventosa, A. (2013). Systematic and biotechnological aspects of halophilic and halotolerant actinomycetes. Extremophiles 17, 1-13. doi: 10.1007/s00792-012-0493-5
-
(2013)
Extremophiles
, vol.17
, pp. 1-13
-
-
Hamedi, J.1
Mohammadipanah, F.2
Ventosa, A.3
-
29
-
-
85019544289
-
Structure and antibacterial activities of new cyclic peptide antibiotics, pargamicins B, C and D, from Amycolatopsis sp
-
Hashizume, H., Sawa, R., Yamashita, K., Nishimura, Y., and Igarashi, M. (2017). Structure and antibacterial activities of new cyclic peptide antibiotics, pargamicins B, C and D, from Amycolatopsis sp. ML1-hF4. J. Antibiot. (Tokyo). 70, 699-704. doi: 10.1038/ja.2017.34
-
(2017)
ML1-hF4. J. Antibiot. (Tokyo)
, vol.70
, pp. 699-704
-
-
Hashizume, H.1
Sawa, R.2
Yamashita, K.3
Nishimura, Y.4
Igarashi, M.5
-
30
-
-
84976907502
-
KEGG as a reference resource for gene and protein annotation
-
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. (2016a). KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462. doi: 10.1093/nar/gkv1070
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D457-D462
-
-
Kanehisa, M.1
Sato, Y.2
Kawashima, M.3
Furumichi, M.4
Tanabe, M.5
-
31
-
-
84959528568
-
BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences
-
Kanehisa, M., Sato, Y., and Morishima, K. (2016b). BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J. Mol. Biol. 428, 726-731. doi: 10.1016/j.jmb.2015.11.006
-
(2016)
J. Mol. Biol
, vol.428
, pp. 726-731
-
-
Kanehisa, M.1
Sato, Y.2
Morishima, K.3
-
32
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., et al. (2012). Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649. doi: 10.1093/bioinformatics/bts199
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
-
33
-
-
1642409604
-
'Preparation and analysis of genomic and plasmid DNA'
-
eds T. Kieser, M. J. Bibb, M. J. Buttner, K. F. Chater, and D. A. Hopwood (Norwich: John Innes Foundation)
-
Kieser, T., Bibb, M. J., Buttner, M. J., Chater, K. F., and Hopwood, D. A. (2000). 'Preparation and analysis of genomic and plasmid DNA'. in Practical Streptomyces Genetics, Vol. 1, eds T. Kieser, M. J. Bibb, M. J. Buttner, K. F. Chater, and D. A. Hopwood (Norwich: John Innes Foundation), 161-210
-
(2000)
Practical Streptomyces Genetics
, vol.1
, pp. 161-210
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
34
-
-
84855495004
-
Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation
-
Klassen, J. L., and Currie, C. R. (2012). Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation. BMC Genomics 13:14. doi: 10.1186/1471-2164-13-14
-
(2012)
BMC Genomics
, vol.13
, pp. 14
-
-
Klassen, J.L.1
Currie, C.R.2
-
35
-
-
84879942329
-
Structure and biosynthesis of scabichelin, a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.22
-
Kodani, S., Bicz, J., Song, L., Deeth, R. J., Ohnishi-Kameyama, M., Yoshida, M., et al. (2013). Structure and biosynthesis of scabichelin, a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.22. Org. Biomol. Chem. 11, 4686-4694. doi: 10.1039/c3ob40536b
-
(2013)
Org. Biomol. Chem
, vol.11
, pp. 4686-4694
-
-
Kodani, S.1
Bicz, J.2
Song, L.3
Deeth, R.J.4
Ohnishi-Kameyama, M.5
Yoshida, M.6
-
36
-
-
84939992112
-
Isolation and structure determination of new siderophore albachelin from Amycolatopsis alba
-
Kodani, S., Komaki, H., Suzuki, M., Hemmi, H., and Ohnishi-Kameyama, M. (2015). Isolation and structure determination of new siderophore albachelin from Amycolatopsis alba. Biometals 28, 381-389. doi: 10.1007/s10534-015-9842-z
-
(2015)
Biometals
, vol.28
, pp. 381-389
-
-
Kodani, S.1
Komaki, H.2
Suzuki, M.3
Hemmi, H.4
Ohnishi-Kameyama, M.5
-
37
-
-
35748954014
-
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
-
Konstantinidis, K. T., and Tiedje, J. M. (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr. Opin. Microbiol. 10, 504-509. doi: 10.1016/j.mib.2007.08.006
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 504-509
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
38
-
-
85022158148
-
MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets
-
Kumar, S., Stecher, G., and Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33, 1870-1874. doi: 10.1093/molbev/msw054
-
(2016)
Mol. Biol. Evol
, vol.33
, pp. 1870-1874
-
-
Kumar, S.1
Stecher, G.2
Tamura, K.3
-
39
-
-
84965076205
-
Genetics and genomics of the genus Amycolatopsis
-
Kumari, R., Singh, P., and Lal, R. (2016). Genetics and genomics of the genus Amycolatopsis. Indian J. Microbiol. 56, 233-246. doi: 10.1007/s12088-016-0590-8
-
(2016)
Indian J. Microbiol
, vol.56
, pp. 233-246
-
-
Kumari, R.1
Singh, P.2
Lal, R.3
-
40
-
-
0028223185
-
Glucose kinase has a regulatory role in carbon catabolite repression in Streptomyces coelicolor
-
Kwakman, J. H., and Postma, P. W. (1994). Glucose kinase has a regulatory role in carbon catabolite repression in Streptomyces coelicolor. J. Bacteriol. 176, 2694-2698. doi: 10.1128/jb.176.9.2694-2698.1994
-
(1994)
J. Bacteriol
, vol.176
, pp. 2694-2698
-
-
Kwakman, J.H.1
Postma, P.W.2
-
41
-
-
0001857117
-
'16S/23S rRNA sequencing'
-
eds E. Stackebrandt and M. Goodfellow (New York, NY: John Wiley & Sons)
-
Lane, D. J. (1991). '16S/23S rRNA sequencing'. in Nucleic Acid Techniques in Bacterial Systematics, eds E. Stackebrandt and M. Goodfellow (New York, NY: John Wiley & Sons), 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
42
-
-
0022656043
-
Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov
-
Lechevalier, M. P., Prauser, H., Labeda, D. P., and Ruan, J. S. (1986). Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov. Int. J. Syst. Bacteriol. 36, 29-37. doi: 10.1099/00207713-36-1-29
-
(1986)
Int. J. Syst. Bacteriol
, vol.36
, pp. 29-37
-
-
Lechevalier, M.P.1
Prauser, H.2
Labeda, D.P.3
Ruan, J.S.4
-
43
-
-
84960373245
-
OrthoANI: an improved algorithm and software for calculating average nucleotide identity
-
Lee, I., Kim, Y. O., Park, S. C., and Chun, J. (2016). OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int. J. Syst. Evol. Microbiol. 66, 1100-1103. doi: 10.1099/ijsem.0.000760
-
(2016)
Int. J. Syst. Evol. Microbiol
, vol.66
, pp. 1100-1103
-
-
Lee, I.1
Kim, Y.O.2
Park, S.C.3
Chun, J.4
-
44
-
-
65549162526
-
Cloning and characterization of the biosynthetic gene cluster for tomaymycin, an SJG-136 monomeric analog
-
Li, W., Chou, S., Khullar, A., and Gerratana, B. (2009). Cloning and characterization of the biosynthetic gene cluster for tomaymycin, an SJG-136 monomeric analog. Appl. Environ. Microbiol. 75, 2958-2963. doi: 10.1128/AEM.02325-08
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 2958-2963
-
-
Li, W.1
Chou, S.2
Khullar, A.3
Gerratana, B.4
-
45
-
-
85016487461
-
Diversity, antimicrobial activity, and biosynthetic potential of cultivable actinomycetes associated with lichen symbiosis
-
Liu, C., Jiang, Y., Wang, X., Chen, D., Chen, X., Wang, L., et al. (2017). Diversity, antimicrobial activity, and biosynthetic potential of cultivable actinomycetes associated with lichen symbiosis. Microb. Ecol., 74, 570-584. doi: 10.1007/s00248-017-0972-4
-
(2017)
Microb. Ecol
, vol.74
, pp. 570-584
-
-
Liu, C.1
Jiang, Y.2
Wang, X.3
Chen, D.4
Chen, X.5
Wang, L.6
-
46
-
-
84947487970
-
Twenty years of bacterial genome sequencing
-
Loman, N. J., and Pallen, M. J. (2015). Twenty years of bacterial genome sequencing. Nat. Rev. Microbiol. 13, 1-9. doi: 10.1038/nrmicro3565
-
(2015)
Nat. Rev. Microbiol
, vol.13
, pp. 1-9
-
-
Loman, N.J.1
Pallen, M.J.2
-
47
-
-
84939557642
-
Minimum information about a biosynthetic gene cluster
-
Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., et al. (2015). Minimum information about a biosynthetic gene cluster. Nat. Chem. Biol. 11, 625-631. doi: 10.1038/nchembio.1890
-
(2015)
Nat. Chem. Biol
, vol.11
, pp. 625-631
-
-
Medema, M.H.1
Kottmann, R.2
Yilmaz, P.3
Cummings, M.4
Biggins, J.B.5
Blin, K.6
-
48
-
-
84874011652
-
Genome sequence-based species delimitation with confidence intervals and improved distance functions
-
Meier-Kolthoff, J. P., Auch, A. F., Klenk, H. P., and Göker, M. (2013). Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14:60. doi: 10.1186/1471-2105-14-60
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 60
-
-
Meier-Kolthoff, J.P.1
Auch, A.F.2
Klenk, H.P.3
Göker, M.4
-
49
-
-
84890634795
-
Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age
-
Meier-Kolthoff, J. P., Klenk, H. P., and Göker, M. (2014). Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. Int. J. Syst. Evol. Microbiol. 64, 352-356. doi: 10.1099/ijs.0.056994-0
-
(2014)
Int. J. Syst. Evol. Microbiol
, vol.64
, pp. 352-356
-
-
Meier-Kolthoff, J.P.1
Klenk, H.P.2
Göker, M.3
-
50
-
-
70350722394
-
Genomic basis for natural product biosynthetic diversity in the actinomycetes
-
Nett, M., Ikeda, H., and Moore, B. S. (2009). Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat. Prod. Rep. 26, 1362-1384. doi: 10.1039/b817069j
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 1362-1384
-
-
Nett, M.1
Ikeda, H.2
Moore, B.S.3
-
51
-
-
84946109343
-
Littoral lichens as a novel source of potentially bioactive actinobacteria
-
Parrot, D., Antony-Babu, S., Intertaglia, L., Grube, M., Tomasi, S., and Suzuki, M. T. (2015). Littoral lichens as a novel source of potentially bioactive actinobacteria. Sci. Rep. 5:15839. doi: 10.1038/srep15839
-
(2015)
Sci. Rep
, vol.5
, pp. 15839
-
-
Parrot, D.1
Antony-Babu, S.2
Intertaglia, L.3
Grube, M.4
Tomasi, S.5
Suzuki, M.T.6
-
52
-
-
0021278938
-
Pathways of glucose catabolism during germination of Streptomyces spores
-
Salas, J. A., Quirós, L. M., and Hardisson, C. (1984). Pathways of glucose catabolism during germination of Streptomyces spores. FEMS Microbiol. Lett. 22, 229-233. doi: 10.1111/j.1574-6968.1984.tb00732.x
-
(1984)
FEMS Microbiol. Lett
, vol.22
, pp. 229-233
-
-
Salas, J.A.1
Quirós, L.M.2
Hardisson, C.3
-
53
-
-
77952801250
-
A biosynthetic pathway for BE-7585A, a 2-thiosugar-containing angucycline-type natural product
-
Sasaki, E., Ogasawara, Y., and Liu, H. W. (2010). A biosynthetic pathway for BE-7585A, a 2-thiosugar-containing angucycline-type natural product. J. Am. Chem. Soc. 132, 7405-7417. doi: 10.1021/ja1014037
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 7405-7417
-
-
Sasaki, E.1
Ogasawara, Y.2
Liu, H.W.3
-
54
-
-
85046006903
-
Mediators of mutualistic microbe-microbe interactions
-
[Epub ahead of print]
-
Scherlach, K., and Hertweck, C. (2017). Mediators of mutualistic microbe-microbe interactions. Nat. Prod. Rep. doi: 10.1039/C7NP00035A. [Epub ahead of print]
-
(2017)
Nat. Prod. Rep
-
-
Scherlach, K.1
Hertweck, C.2
-
55
-
-
84882623924
-
Advantages and limitations of genomics in prokaryotic taxonomy
-
Sentausa, E., and Fournier, P. E. (2013). Advantages and limitations of genomics in prokaryotic taxonomy. Clin. Microbiol. Infect. 19, 790-795. doi: 10.1111/1469-0691.12181
-
(2013)
Clin. Microbiol. Infect
, vol.19
, pp. 790-795
-
-
Sentausa, E.1
Fournier, P.E.2
-
56
-
-
79960880056
-
Structure and biosynthesis of amychelin, an unusual mixed-ligand siderophore from Amycolatopsis sp
-
Seyedsayamdost, M. R., Traxler, M. F., Zheng, S. L., Kolter, R., and Clardy, J. (2011). Structure and biosynthesis of amychelin, an unusual mixed-ligand siderophore from Amycolatopsis sp. AA4. J. Am. Chem. Soc. 133, 11434-11437. doi: 10.1021/ja203577e
-
(2011)
AA4. J. Am. Chem. Soc
, vol.133
, pp. 11434-11437
-
-
Seyedsayamdost, M.R.1
Traxler, M.F.2
Zheng, S.L.3
Kolter, R.4
Clardy, J.5
-
57
-
-
84943450847
-
Actinomycetes: source, identification, and their applications
-
Sharma, M., Dangi, P., and Choudhary, M. (2014). Actinomycetes: source, identification, and their applications. Int. J. Curr. Microbiol. App. Sci. 3, 801-832. Available online at: https://www.ijcmas.com/Archives-15.php
-
(2014)
Int. J. Curr. Microbiol. App. Sci
, vol.3
, pp. 801-832
-
-
Sharma, M.1
Dangi, P.2
Choudhary, M.3
-
58
-
-
84880982069
-
Identification of micromonolactam, a new polyene macrocyclic lactam from two marine Micromonospora strains using chemical and molecular methods: clarification of the biosynthetic pathway from a glutamate starter unit
-
Skellam, E. J., Stewart, A. K., Strangman, W. K., and Wright, J. L. (2013). Identification of micromonolactam, a new polyene macrocyclic lactam from two marine Micromonospora strains using chemical and molecular methods: clarification of the biosynthetic pathway from a glutamate starter unit. J. Antibiot. (Tokyo). 66, 431-441. doi: 10.1038/ja.2013.34
-
(2013)
J. Antibiot. (Tokyo)
, vol.66
, pp. 431-441
-
-
Skellam, E.J.1
Stewart, A.K.2
Strangman, W.K.3
Wright, J.L.4
-
59
-
-
84907259451
-
Overproduction of ristomycin A by activation of a silent gene cluster in Amycolatopsis japonicum MG417-CF17
-
Spohn, M., Kirchner, N., Kulik, A., Jochim, A., Wolf, F., Muenzer, P., et al. (2014). Overproduction of ristomycin A by activation of a silent gene cluster in Amycolatopsis japonicum MG417-CF17. Antimicrob. Agents Chemother. 58, 6185-6196. doi: 10.1128/AAC.03512-14
-
(2014)
Antimicrob. Agents Chemother
, vol.58
, pp. 6185-6196
-
-
Spohn, M.1
Kirchner, N.2
Kulik, A.3
Jochim, A.4
Wolf, F.5
Muenzer, P.6
-
60
-
-
0035989633
-
Report of the ad hoc comittee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kampfer, P., Maiden, M. C. J., et al. (2002). Report of the ad hoc comittee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52, 1043-1047. doi: 10.1099/ijs.0.02360-0.02360
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.D.4
Kampfer, P.5
Maiden, M.C.J.6
-
61
-
-
85040511825
-
A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus
-
Tang, B., Xie, F., Zhao, W., Wang, J., Dai, S., Zheng, H., et al. (2016). A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus. Synth. Syst. Biotechnol. 1, 169-186. doi: 10.1016/j.synbio.2016.05.001
-
(2016)
Synth. Syst. Biotechnol
, vol.1
, pp. 169-186
-
-
Tang, B.1
Xie, F.2
Zhao, W.3
Wang, J.4
Dai, S.5
Zheng, H.6
-
62
-
-
84885660159
-
Identifying producers of antibacterial compounds by screening for antibiotic resistance
-
Thaker, M. N., Wang, W., Spanogiannopoulos, P., Waglechner, N., King, A. M., Medina, R., et al. (2013). Identifying producers of antibacterial compounds by screening for antibiotic resistance. Nat. Biotechnol. 31, 922-927. doi: 10.1038/nbt.2685
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 922-927
-
-
Thaker, M.N.1
Wang, W.2
Spanogiannopoulos, P.3
Waglechner, N.4
King, A.M.5
Medina, R.6
-
63
-
-
84890630720
-
Microbial genomic taxonomy
-
Thompson, C. C., Chimetto, L., Edwards, R. A., Swings, J., Stackebrandt, E., and Thompson, F. L. (2013). Microbial genomic taxonomy. BMC Genomics 14:913. doi: 10.1186/1471-2164-14-913
-
(2013)
BMC Genomics
, vol.14
, pp. 913
-
-
Thompson, C.C.1
Chimetto, L.2
Edwards, R.A.3
Swings, J.4
Stackebrandt, E.5
Thompson, F.L.6
-
64
-
-
33644513422
-
The complete biosynthetic gene cluster of the 28-membered polyketide macrolactones, halstoctacosanolides, from Streptomyces halstedii HC34
-
Tohyama, S., Kakinuma, K., and Eguchi, T. (2006). The complete biosynthetic gene cluster of the 28-membered polyketide macrolactones, halstoctacosanolides, from Streptomyces halstedii HC34. J. Antibiot. (Tokyo) 59, 44-52. doi: 10.1038/ja.2006.7
-
(2006)
J. Antibiot. (Tokyo)
, vol.59
, pp. 44-52
-
-
Tohyama, S.1
Kakinuma, K.2
Eguchi, T.3
-
65
-
-
84907270600
-
Antibiotic resistance mechanisms inform discovery: identification and characterization of a novel Amycolatopsis strain producing ristocetin
-
Truman, A. W., Kwun, M. J., Cheng, J., Yang, S. H., Suh, J. W., and Hong, H. J. (2014). Antibiotic resistance mechanisms inform discovery: identification and characterization of a novel Amycolatopsis strain producing ristocetin. Antimicrob. Agents Chemother. 58, 5687-5695. doi: 10.1128/AAC.03349-14
-
(2014)
Antimicrob. Agents Chemother
, vol.58
, pp. 5687-5695
-
-
Truman, A.W.1
Kwun, M.J.2
Cheng, J.3
Yang, S.H.4
Suh, J.W.5
Hong, H.J.6
-
66
-
-
84861445578
-
Characterization of new class III lantibiotics-erythreapeptin, avermipeptin and griseopeptin from Saccharopolyspora erythraea, Streptomyces avermitilis and Streptomyces griseus demonstrates stepwise N-terminal leader processing
-
Völler, G. H., Krawczyk, J. M., Pesic, A., Krawczyk, B., Nachtigall, J., and Süssmuth, R. D. (2012). Characterization of new class III lantibiotics-erythreapeptin, avermipeptin and griseopeptin from Saccharopolyspora erythraea, Streptomyces avermitilis and Streptomyces griseus demonstrates stepwise N-terminal leader processing. ChemBioChem 13, 1174-1183. doi: 10.1002/cbic.201200118
-
(2012)
ChemBioChem
, vol.13
, pp. 1174-1183
-
-
Völler, G.H.1
Krawczyk, J.M.2
Pesic, A.3
Krawczyk, B.4
Nachtigall, J.5
Süssmuth, R.D.6
-
67
-
-
0026067797
-
16S Ribosomal DNA amplification for phylogenetic study
-
Weisburg, W. G., Barns, S. M., Pelletier, D. A., and Lane, D. J. (1991). 16S Ribosomal DNA amplification for phylogenetic study. J. Biotechnol. 173, 697-703. doi: 10.1128/jb.173.2.697-703.1991
-
(1991)
J. Biotechnol
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
68
-
-
85021660570
-
Rifamorpholines A-E, potential antibiotics from locust-associated actinobacteria Amycolatopsis sp
-
Xiao, Y. S., Zhang, B., Zhang, M., Guo, Z. K., Deng, X. Z., Shi, J., et al. (2017). Rifamorpholines A-E, potential antibiotics from locust-associated actinobacteria Amycolatopsis sp. Hca4. Org. Biomol. Chem. 15, 3909-3916. doi: 10.1039/C7OB00614D
-
(2017)
Hca4. Org. Biomol. Chem
, vol.15
, pp. 3909-3916
-
-
Xiao, Y.S.1
Zhang, B.2
Zhang, M.3
Guo, Z.K.4
Deng, X.Z.5
Shi, J.6
-
69
-
-
84902082777
-
Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis
-
Xu, L., Huang, H., Wei, W., Zhong, Y., Tang, B., Yuan, H., et al. (2014). Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis. BMC Genomics 15:363. doi: 10.1186/1471-2164-15-363
-
(2014)
BMC Genomics
, vol.15
, pp. 363
-
-
Xu, L.1
Huang, H.2
Wei, W.3
Zhong, Y.4
Tang, B.5
Yuan, H.6
-
70
-
-
85013809817
-
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
-
Yoon, S. H., Ha, S. M., Kwon, S., Lim, J., Kim, Y., Seo, H., et al. (2017). Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int. J. Syst. Evol. Microbiol. 67, 1613-1617. doi: 10.1099/ijsem.0.001755
-
(2017)
Int. J. Syst. Evol. Microbiol
, vol.67
, pp. 1613-1617
-
-
Yoon, S.H.1
Ha, S.M.2
Kwon, S.3
Lim, J.4
Kim, Y.5
Seo, H.6
-
71
-
-
85012214831
-
The polyketide backbone of thiolactomycin is assembled by an unusual iterative polyketide synthase
-
Yurkovich, M. E., Jenkins, R., Sun, Y., Tosin, M., and Leadlay, P. F. (2017). The polyketide backbone of thiolactomycin is assembled by an unusual iterative polyketide synthase. Chem. Commun. 53, 2182-2185. doi: 10.1039/C6CC09934C
-
(2017)
Chem. Commun
, vol.53
, pp. 2182-2185
-
-
Yurkovich, M.E.1
Jenkins, R.2
Sun, Y.3
Tosin, M.4
Leadlay, P.F.5
-
72
-
-
84986264851
-
Biogeography and adaptive evolution of Streptomyces strains from saline environments
-
Zhao, F., Qin, Y. H., Zheng, X., Zhao, H. W., Chai, D. Y., Li, W., et al. (2016). Biogeography and adaptive evolution of Streptomyces strains from saline environments. Sci. Rep. 6:32718. doi: 10.1038/srep32718
-
(2016)
Sci. Rep
, vol.6
, pp. 32718
-
-
Zhao, F.1
Qin, Y.H.2
Zheng, X.3
Zhao, H.W.4
Chai, D.Y.5
Li, W.6
|