메뉴 건너뛰기




Volumn 428, Issue 4, 2016, Pages 726-731

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

Author keywords

genome annotation; KEGG Orthology; KEGG pathway mapping; metagenome analysis; taxonomic composition

Indexed keywords

ALGORITHM; COMPARATIVE GENE MAPPING; DATA ANALYSIS SOFTWARE; GENE CONSTRUCT; GENE FUNCTION; GENETIC DATABASE; GENOME; GENOME SIZE; HUMAN; METAGENOME; NONHUMAN; PANGENOME; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; TAXONOMY; VIRUS GENE; WEB BROWSER; BIOLOGY; DNA SEQUENCE; INTERNET; PROCEDURES;

EID: 84959528568     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2015.11.006     Document Type: Article
Times cited : (2610)

References (16)
  • 2
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • W.R. Pearson Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms Genomics 11 1991 635 650
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 4
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: An automatic genome annotation and pathway reconstruction server
    • Y. Moriya, M. Itoh, S. Okuda, A. Yoshizawa, and M. Kanehisa KAAS: An automatic genome annotation and pathway reconstruction server Nucleic Acids Res. 35 2007 W182 W185
    • (2007) Nucleic Acids Res. , vol.35 , pp. W182-W185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.4    Kanehisa, M.5
  • 7
    • 84891822155 scopus 로고    scopus 로고
    • RefSeq microbial genomes database: New representation and annotation strategy
    • T. Tatusova, S. Ciufo, B. Fedorov, K. O'Neill, and I. Tolstoy RefSeq microbial genomes database: New representation and annotation strategy Nucleic Acids Res. 42 2014 D553 D559
    • (2014) Nucleic Acids Res. , vol.42 , pp. D553-D559
    • Tatusova, T.1    Ciufo, S.2    Fedorov, B.3    O'Neill, K.4    Tolstoy, I.5
  • 8
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • UniProt Consortium UniProt: A hub for protein information Nucleic Acids Res. 43 2015 D204 D212
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
  • 9
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • W. Li, and A. Godzik Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 22 2006 1658 1659
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 12
    • 84905455179 scopus 로고    scopus 로고
    • GHOSTX: An improved sequence homology search algorithm using a query suffix array and a database suffix array
    • S. Suzuki, M. Kakuta, T. Ishida, and Y. Akiyama GHOSTX: An improved sequence homology search algorithm using a query suffix array and a database suffix array PLoS One 9 2014 e103833
    • (2014) PLoS One , vol.9
    • Suzuki, S.1    Kakuta, M.2    Ishida, T.3    Akiyama, Y.4
  • 13
    • 84952637859 scopus 로고    scopus 로고
    • Complete genome of Kangiella geojedonensis KCTC 23420T, putative evidence for recent genome reduction in marine environments
    • H. Choe, S. Kim, J. Oh, A. Nasir, B.K. Kim, and K.M. Kim Complete genome of Kangiella geojedonensis KCTC 23420T, putative evidence for recent genome reduction in marine environments Mar. Genomics 2015 10.1016/j.margen.2015.05.015
    • (2015) Mar. Genomics
    • Choe, H.1    Kim, S.2    Oh, J.3    Nasir, A.4    Kim, B.K.5    Kim, K.M.6
  • 14
    • 58149179971 scopus 로고    scopus 로고
    • ExplorEnz: the primary source of the IUBMB enzyme list
    • A.G. McDonald, S. Boyce, and K.F. Tipton ExplorEnz: The primary source of the IUBMB enzyme list Nucleic Acids Res. 37 2009 D593 D597
    • (2009) Nucleic Acids Res. , vol.37 , pp. D593-D597
    • McDonald, A.G.1    Boyce, S.2    Tipton, K.F.3
  • 15
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • Heliconius Genome Consortium Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature 487 2012 94 98
    • (2012) Nature , vol.487 , pp. 94-98
  • 16
    • 84929649366 scopus 로고    scopus 로고
    • Tara Oceans. Tara Oceans studies plankton at planetary scale. Introduction
    • P. Bork, C. Bowle, C. de Vargas, G. Gorsky, E. Karsenti, and P. Wincker Tara Oceans. Tara Oceans studies plankton at planetary scale. Introduction Science 348 2015 873
    • (2015) Science , vol.348 , pp. 873
    • Bork, P.1    Bowle, C.2    De Vargas, C.3    Gorsky, G.4    Karsenti, E.5    Wincker, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.