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Volumn 64, Issue PART 2, 2014, Pages 352-356

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GENOMIC DNA; GUANINE;

EID: 84890634795     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.056994-0     Document Type: Article
Times cited : (485)

References (34)
  • 1
    • 77952891045 scopus 로고    scopus 로고
    • Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
    • Auch, A. F., Klenk, H.-P. & Göker, M. (2010a). Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Stand Genomic Sci 2, 142-148.
    • (2010) Stand Genomic Sci , vol.2 , pp. 142-148
    • Auch, A.F.1    Klenk, H.-P.2    Göker, M.3
  • 2
    • 77952891913 scopus 로고    scopus 로고
    • Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
    • Auch, A. F., von Jan, M., Klenk, H.-P. & Göker, M. (2010b). Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2, 117-134.
    • (2010) Stand Genomic Sci , vol.2 , pp. 117-134
    • Auch, A.F.1    von Jan, M.2    Klenk, H.-P.3    Göker, M.4
  • 3
    • 0015840330 scopus 로고
    • Deoxyribonucleic acid reassociation in the taxonomy of enteric bacteria
    • Brenner, D. J. (1973). Deoxyribonucleic acid reassociation in the taxonomy of enteric bacteria. Int J Syst Bacteriol 23, 298-307.
    • (1973) Int J Syst Bacteriol , vol.23 , pp. 298-307
    • Brenner, D.J.1
  • 5
    • 0040460179 scopus 로고    scopus 로고
    • List of bacterial names with standing in nomenclature: A folder available on the internet
    • Euzéby, J. P. (1997). List of bacterial names with standing in nomenclature: a folder available on the internet. Int J Syst Bacteriol 47, 590-592.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 590-592
    • Euzéby, J.P.1
  • 7
    • 84879351437 scopus 로고    scopus 로고
    • Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects
    • Göker, M. & Klenk, H.-P. (2013). Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects. Stand Genomic Sci 8, 360-374.
    • (2013) Stand Genomic Sci , vol.8 , pp. 360-374
    • Göker, M.1    Klenk, H.-P.2
  • 10
    • 76849108391 scopus 로고    scopus 로고
    • Similarity analysis of DNAs
    • In, Edited by T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology
    • Johnson, J. L. & Whitman, W. B. (2007). Similarity analysis of DNAs. In Methods for General and Molecular Microbiology, pp. 624-652. Edited by T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
    • (2007) Methods for General and Molecular Microbiology , pp. 624-652
    • Johnson, J.L.1    Whitman, W.B.2
  • 11
    • 77952889628 scopus 로고    scopus 로고
    • En route to a genome-based classification of Archaea and Bacteria?
    • Klenk, H.-P. & Göker, M. (2010). En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 33, 175-182.
    • (2010) Syst Appl Microbiol , vol.33 , pp. 175-182
    • Klenk, H.-P.1    Göker, M.2
  • 12
    • 0017395145 scopus 로고
    • A sensitive estimation of the percentage of guanine plus cytosine in deoxyribonucleic acid by high performance liquid chromatography
    • Ko, C. Y., Johnson, J. L., Barnett, L. B., McNair, H. M. & Vercellotti, J. R. (1977). A sensitive estimation of the percentage of guanine plus cytosine in deoxyribonucleic acid by high performance liquid chromatography. Anal Biochem 80, 183-192.
    • (1977) Anal Biochem , vol.80 , pp. 183-192
    • Ko, C.Y.1    Johnson, J.L.2    Barnett, L.B.3    McNair, H.M.4    Vercellotti, J.R.5
  • 13
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis, K. T. & Tiedje, J. M. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 102, 2567-2572.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 16
    • 73649209034 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
    • Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
    • (1962) J Mol Biol , vol.5 , pp. 109-118
    • Marmur, J.1    Doty, P.2
  • 17
    • 84871205244 scopus 로고    scopus 로고
    • The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation
    • Mavromatis, K., Land, M. L., Brettin, T. S., Quest, D. J., Copeland, A., Clum, A., Goodwin, L., Woyke, T., Lapidus, A. & other authors (2012). The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation. PLoS ONE 7, e48837.
    • (2012) PLoS ONE , vol.7
    • Mavromatis, K.1    Land, M.L.2    Brettin, T.S.3    Quest, D.J.4    Copeland, A.5    Clum, A.6    Goodwin, L.7    Woyke, T.8    Lapidus, A.9
  • 18
    • 84874011652 scopus 로고    scopus 로고
    • Genome sequence-based species delimitation with confidence intervals and improved distance functions
    • Meier-Kolthoff, J. P., Auch, A. F., Klenk, H.-P. & Göker, M. (2013a). Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14, 60.
    • (2013) BMC Bioinformatics , vol.14 , pp. 60
    • Meier-Kolthoff, J.P.1    Auch, A.F.2    Klenk, H.-P.3    Göker, M.4
  • 19
    • 84880210119 scopus 로고    scopus 로고
    • When should a DDH experiment be mandatory in microbial taxonomy?
    • Meier-Kolthoff, J. P., Göker, M., Spröer, C. & Klenk, H.-P. (2013b). When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195, 413-418.
    • (2013) Arch Microbiol , vol.195 , pp. 413-418
    • Meier-Kolthoff, J.P.1    Göker, M.2    Spröer, C.3    Klenk, H.-P.4
  • 20
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 21
    • 83155193226 scopus 로고    scopus 로고
    • Determination of the G+C content of prokaryotes
    • In, Edited by F. Rainey & A. Oren. Waltham, MA: Academic Press
    • Mesbah, N. M., Whitman, W. B. & Mesbah, M. (2011). Determination of the G+C content of prokaryotes. In Taxonomy of Prokaryotes, pp. 299-324. Edited by F. Rainey & A. Oren. Waltham, MA: Academic Press.
    • (2011) Taxonomy of Prokaryotes , pp. 299-324
    • Mesbah, N.M.1    Whitman, W.B.2    Mesbah, M.3
  • 22
    • 80053650964 scopus 로고    scopus 로고
    • Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios
    • Moreira, A. P. B., Pereira, N., Jr & Thompson, F. L. (2011). Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios. Int J Syst Evol Microbiol 61, 2379-2383.
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 2379-2383
    • Moreira, A.P.B.1    Pereira Jr., N.2    Thompson, F.L.3
  • 24
    • 0014460729 scopus 로고
    • Determination of DNA base compositions from melting profiles in dilute buffers
    • Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base compositions from melting profiles in dilute buffers. Biopolymers 7, 503-516.
    • (1969) Biopolymers , vol.7 , pp. 503-516
    • Owen, R.J.1    Hill, L.R.2    Lapage, S.P.3
  • 26
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team, Vienna: R Foundation for Statistical Computing
    • R Development Core Team (2013). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing.
    • (2013) R: A Language and Environment for Statistical Computing
  • 27
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter, M. & Rosselló-Móra, R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106, 19126-19131.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 19126-19131
    • Richter, M.1    Rosselló-Móra, R.2
  • 28
  • 29
    • 0011933622 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl
    • Schildkraut, C. L., Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl. J Mol Biol 4, 430-443.
    • (1962) J Mol Biol , vol.4 , pp. 430-443
    • Schildkraut, C.L.1    Marmur, J.2    Doty, P.3
  • 30
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociations and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociations and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 32
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • In, Edited by D. M. Hillis, C. Moritz & B. K. Mable. Sunderland, MA: Sinauer Associates
    • Swofford, D. L., Olsen, G. J., Waddell, P. J. & Hillis, D. M. (1996). Phylogenetic inference. In Molecular Systematics, pp. 407-514. Edited by D. M. Hillis, C. Moritz & B. K. Mable. Sunderland, MA: Sinauer Associates.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.