-
1
-
-
84904554933
-
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
-
Cimermancic, P., Medema, M.H., Claesen, J., Kurita, K., Wieland Brown, L.C., Mavrommatis, K., Pati, A., Godfrey, P.A., Koehrsen, M., Clardy, J., et al. Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell 158 (2014), 412–421.
-
(2014)
Cell
, vol.158
, pp. 412-421
-
-
Cimermancic, P.1
Medema, M.H.2
Claesen, J.3
Kurita, K.4
Wieland Brown, L.C.5
Mavrommatis, K.6
Pati, A.7
Godfrey, P.A.8
Koehrsen, M.9
Clardy, J.10
-
2
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
Bentley, S.D., Chater, K.F., Cerdeno-Tarraga, A.M., Challis, G.L., Thomson, N.R., James, K.D., Harris, D.E., Quail, M.A., Kieser, H., Harper, D., et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417 (2002), 141–147.
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
Harris, D.E.7
Quail, M.A.8
Kieser, H.9
Harper, D.10
-
3
-
-
0038561132
-
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
-
Ikeda, H., Ishikawa, J., Hanamoto, A., Shinose, M., Kikuchi, H., Shiba, T., Sakaki, Y., Hattori, M., Omura, S., Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21 (2003), 526–531.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 526-531
-
-
Ikeda, H.1
Ishikawa, J.2
Hanamoto, A.3
Shinose, M.4
Kikuchi, H.5
Shiba, T.6
Sakaki, Y.7
Hattori, M.8
Omura, S.9
-
4
-
-
0035834039
-
Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites
-
Omura, S., Ikeda, H., Ishikawa, J., Hanamoto, A., Takahashi, C., Shinose, M., Takahashi, Y., Horikawa, H., Nakazawa, H., Osonoe, T., et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci U S A 98 (2001), 12215–12220.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 12215-12220
-
-
Omura, S.1
Ikeda, H.2
Ishikawa, J.3
Hanamoto, A.4
Takahashi, C.5
Shinose, M.6
Takahashi, Y.7
Horikawa, H.8
Nakazawa, H.9
Osonoe, T.10
-
5
-
-
84979984723
-
The evolution of genome mining in microbes - a review
-
Ziemert, N., Alanjary, M., Weber, T., The evolution of genome mining in microbes - a review. Nat Prod Rep 33 (2016), 988–1005.
-
(2016)
Nat Prod Rep
, vol.33
, pp. 988-1005
-
-
Ziemert, N.1
Alanjary, M.2
Weber, T.3
-
6
-
-
84899651850
-
In silico tools for the analysis of antibiotic biosynthetic pathways
-
Weber, T., In silico tools for the analysis of antibiotic biosynthetic pathways. Int J Med Microbiol 304 (2014), 230–235.
-
(2014)
Int J Med Microbiol
, vol.304
, pp. 230-235
-
-
Weber, T.1
-
7
-
-
84939536885
-
Computational approaches to natural product discovery
-
Medema, M.H., Fischbach, M.A., Computational approaches to natural product discovery. Nat Chem Biol 11 (2015), 639–648.
-
(2015)
Nat Chem Biol
, vol.11
, pp. 639-648
-
-
Medema, M.H.1
Fischbach, M.A.2
-
8
-
-
85014230646
-
The Secondary Metabolite Bioinformatics Portal: Computational tools to facilitate synthetic biology of secondary metabolite production
-
Weber, T., Kim, H.U., The Secondary Metabolite Bioinformatics Portal: Computational tools to facilitate synthetic biology of secondary metabolite production. Synth Syst Biotechnol 1 (2016), 69–79.
-
(2016)
Synth Syst Biotechnol
, vol.1
, pp. 69-79
-
-
Weber, T.1
Kim, H.U.2
-
9
-
-
79959920872
-
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema, M.H., Blin, K., Cimermancic, P., de Jager, V., Zakrzewski, P., Fischbach, M.A., Weber, T., Takano, E., Breitling, R., antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res 39 (2011), W339–W346.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W339-W346
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
de Jager, V.4
Zakrzewski, P.5
Fischbach, M.A.6
Weber, T.7
Takano, E.8
Breitling, R.9
-
10
-
-
84883353135
-
antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers
-
Blin, K., Medema, M.H., Kazempour, D., Fischbach, M.A., Breitling, R., Takano, E., Weber, T., antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res 41 (2013), W204–W212.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W204-W212
-
-
Blin, K.1
Medema, M.H.2
Kazempour, D.3
Fischbach, M.A.4
Breitling, R.5
Takano, E.6
Weber, T.7
-
11
-
-
84895873870
-
Improved lanthipeptide detection and prediction for antiSMASH
-
Blin, K., Kazempour, D., Wohlleben, W., Weber, T., Improved lanthipeptide detection and prediction for antiSMASH. PLoS One, 9, 2014, e89420.
-
(2014)
PLoS One
, vol.9
, pp. e89420
-
-
Blin, K.1
Kazempour, D.2
Wohlleben, W.3
Weber, T.4
-
12
-
-
84979859096
-
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters
-
Weber, T., Blin, K., Duddela, S., Krug, D., Kim, H.U., Bruccoleri, R., Lee, S.Y., Fischbach, M.A., Muller, R., Wohlleben, W., et al. antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res 43 (2015), W237–W243.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W237-W243
-
-
Weber, T.1
Blin, K.2
Duddela, S.3
Krug, D.4
Kim, H.U.5
Bruccoleri, R.6
Lee, S.Y.7
Fischbach, M.A.8
Muller, R.9
Wohlleben, W.10
-
13
-
-
85020822860
-
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
-
antiSMASH is a genome mining tool that has been most widely used in both academia and industry, and continues to be upgraded by adopting new BGC detection algorithms.
-
Blin, K., Wolf, T., Chevrette, M.G., Lu, X., Schwalen, C.J., Kautsar, S.A., Suarez Duran, H.G., de Los Santos, E.L.C., Kim, H.U., Nave, M., et al. antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Res 45 (2017), W36–W41 antiSMASH is a genome mining tool that has been most widely used in both academia and industry, and continues to be upgraded by adopting new BGC detection algorithms.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W36-W41
-
-
Blin, K.1
Wolf, T.2
Chevrette, M.G.3
Lu, X.4
Schwalen, C.J.5
Kautsar, S.A.6
Suarez Duran, H.G.7
de Los Santos, E.L.C.8
Kim, H.U.9
Nave, M.10
-
14
-
-
84949999706
-
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
-
Skinnider, M.A., Dejong, C.A., Rees, P.N., Johnston, C.W., Li, H., Webster, A.L., Wyatt, M.A., Magarvey, N.A., Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM). Nucleic Acids Res 43 (2015), 9645–9662.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 9645-9662
-
-
Skinnider, M.A.1
Dejong, C.A.2
Rees, P.N.3
Johnston, C.W.4
Li, H.5
Webster, A.L.6
Wyatt, M.A.7
Magarvey, N.A.8
-
15
-
-
84991669536
-
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
-
Skinnider, M.A., Johnston, C.W., Edgar, R.E., Dejong, C.A., Merwin, N.J., Rees, P.N., Magarvey, N.A., Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining. Proc Natl Acad Sci U S A 113 (2016), E6343–E6351.
-
(2016)
Proc Natl Acad Sci U S A
, vol.113
, pp. E6343-E6351
-
-
Skinnider, M.A.1
Johnston, C.W.2
Edgar, R.E.3
Dejong, C.A.4
Merwin, N.J.5
Rees, P.N.6
Magarvey, N.A.7
-
16
-
-
85023161576
-
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
-
PRISM is another complementary genome mining tool that detects BGCs and rigorously predicts potential structures of resulting secondary metabolite products.
-
Skinnider, M.A., Merwin, N.J., Johnston, C.W., Magarvey, N.A., PRISM 3: expanded prediction of natural product chemical structures from microbial genomes. Nucleic Acids Res 45 (2017), W49–W54 PRISM is another complementary genome mining tool that detects BGCs and rigorously predicts potential structures of resulting secondary metabolite products.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W49-W54
-
-
Skinnider, M.A.1
Merwin, N.J.2
Johnston, C.W.3
Magarvey, N.A.4
-
17
-
-
84957559477
-
Bioinformatics tools for the discovery of new nonribosomal peptides
-
Leclere, V., Weber, T., Jacques, P., Pupin, M., Bioinformatics tools for the discovery of new nonribosomal peptides. Methods Mol Biol 1401 (2016), 209–232.
-
(2016)
Methods Mol Biol
, vol.1401
, pp. 209-232
-
-
Leclere, V.1
Weber, T.2
Jacques, P.3
Pupin, M.4
-
18
-
-
84966692174
-
CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes
-
Wolf, T., Shelest, V., Nath, N., Shelest, E., CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes. Bioinformatics 32 (2016), 1138–1143.
-
(2016)
Bioinformatics
, vol.32
, pp. 1138-1143
-
-
Wolf, T.1
Shelest, V.2
Nath, N.3
Shelest, E.4
-
19
-
-
85031824559
-
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria
-
Chevrette, M.G., Aicheler, F., Kohlbacher, O., Currie, C.R., Medema, M.H., SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria. Bioinformatics 33 (2017), 3202–3210.
-
(2017)
Bioinformatics
, vol.33
, pp. 3202-3210
-
-
Chevrette, M.G.1
Aicheler, F.2
Kohlbacher, O.3
Currie, C.R.4
Medema, M.H.5
-
20
-
-
85014037010
-
A new genome-mining tool redefines the lasso peptide biosynthetic landscape
-
Tietz, J.I., Schwalen, C.J., Patel, P.S., Maxson, T., Blair, P.M., Tai, H.C., Zakai, U.I., Mitchell, D.A., A new genome-mining tool redefines the lasso peptide biosynthetic landscape. Nat Chem Biol 13 (2017), 470–478.
-
(2017)
Nat Chem Biol
, vol.13
, pp. 470-478
-
-
Tietz, J.I.1
Schwalen, C.J.2
Patel, P.S.3
Maxson, T.4
Blair, P.M.5
Tai, H.C.6
Zakai, U.I.7
Mitchell, D.A.8
-
21
-
-
85023201815
-
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
-
plantiSMASH is a comprehensive genome mining tool dedicated to BGCs and their secondary metabolites of plants.
-
Kautsar, S.A., Suarez Duran, H.G., Blin, K., Osbourn, A., Medema, M.H., plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters. Nucleic Acids Res 45 (2017), W55–W63 plantiSMASH is a comprehensive genome mining tool dedicated to BGCs and their secondary metabolites of plants.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W55-W63
-
-
Kautsar, S.A.1
Suarez Duran, H.G.2
Blin, K.3
Osbourn, A.4
Medema, M.H.5
-
22
-
-
85026436241
-
The PhytoClust tool for metabolic gene clusters discovery in plant genomes
-
Topfer, N., Fuchs, L.M., Aharoni, A., The PhytoClust tool for metabolic gene clusters discovery in plant genomes. Nucleic Acids Res 45 (2017), 7049–7063.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. 7049-7063
-
-
Topfer, N.1
Fuchs, L.M.2
Aharoni, A.3
-
23
-
-
85023177786
-
SeMPI: a genome-based secondary metabolite prediction and identification web server
-
Zierep, P.F., Padilla, N., Yonchev, D.G., Telukunta, K.K., Klementz, D., Gunther, S., SeMPI: a genome-based secondary metabolite prediction and identification web server. Nucleic Acids Res 45 (2017), W64–W71.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W64-W71
-
-
Zierep, P.F.1
Padilla, N.2
Yonchev, D.G.3
Telukunta, K.K.4
Klementz, D.5
Gunther, S.6
-
24
-
-
85023202714
-
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery
-
Alanjary, M., Kronmiller, B., Adamek, M., Blin, K., Weber, T., Huson, D., Philmus, B., Ziemert, N., The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. Nucleic Acids Res 45 (2017), W42–W48.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W42-W48
-
-
Alanjary, M.1
Kronmiller, B.2
Adamek, M.3
Blin, K.4
Weber, T.5
Huson, D.6
Philmus, B.7
Ziemert, N.8
-
25
-
-
84942761231
-
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
-
GNP is the first computational resource to provide integrative analyses involving BGC detection from genome data and identification of novel compounds using LC–MS/MS data.
-
Johnston, C.W., Skinnider, M.A., Wyatt, M.A., Li, X., Ranieri, M.R., Yang, L., Zechel, D.L., Ma, B., Magarvey, N.A., An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products. Nat Commun, 6, 2015, 8421 GNP is the first computational resource to provide integrative analyses involving BGC detection from genome data and identification of novel compounds using LC–MS/MS data.
-
(2015)
Nat Commun
, vol.6
, pp. 8421
-
-
Johnston, C.W.1
Skinnider, M.A.2
Wyatt, M.A.3
Li, X.4
Ranieri, M.R.5
Yang, L.6
Zechel, D.L.7
Ma, B.8
Magarvey, N.A.9
-
26
-
-
85023189562
-
SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases
-
Khater, S., Gupta, M., Agrawal, P., Sain, N., Prava, J., Gupta, P., Grover, M., Kumar, N., Mohanty, D., SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases. Nucleic Acids Res 45 (2017), W72–W79.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W72-W79
-
-
Khater, S.1
Gupta, M.2
Agrawal, P.3
Sain, N.4
Prava, J.5
Gupta, P.6
Grover, M.7
Kumar, N.8
Mohanty, D.9
-
27
-
-
85023206887
-
RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links
-
Agrawal, P., Khater, S., Gupta, M., Sain, N., Mohanty, D., RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links. Nucleic Acids Res 45 (2017), W80–W88.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W80-W88
-
-
Agrawal, P.1
Khater, S.2
Gupta, M.3
Sain, N.4
Mohanty, D.5
-
28
-
-
84983243847
-
Phylogenomic analysis of natural products biosynthetic gene clusters allows discovery of arseno-organic metabolites in model streptomycetes
-
Cruz-Morales, P., Kopp, J.F., Martinez-Guerrero, C., Yanez-Guerra, L.A., Selem-Mojica, N., Ramos-Aboites, H., Feldmann, J., Barona-Gomez, F., Phylogenomic analysis of natural products biosynthetic gene clusters allows discovery of arseno-organic metabolites in model streptomycetes. Genome Biol Evol 8 (2016), 1906–1916.
-
(2016)
Genome Biol Evol
, vol.8
, pp. 1906-1916
-
-
Cruz-Morales, P.1
Kopp, J.F.2
Martinez-Guerrero, C.3
Yanez-Guerra, L.A.4
Selem-Mojica, N.5
Ramos-Aboites, H.6
Feldmann, J.7
Barona-Gomez, F.8
-
29
-
-
84930175909
-
Dereplication: racing to speed up the natural products discovery process
-
Gaudencio, S.P., Pereira, F., Dereplication: racing to speed up the natural products discovery process. Nat Prod Rep 32 (2015), 779–810.
-
(2015)
Nat Prod Rep
, vol.32
, pp. 779-810
-
-
Gaudencio, S.P.1
Pereira, F.2
-
30
-
-
84981297901
-
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
-
GNPS is the first open-access platform for analysis, storage and sharing of MS/MS-data.
-
Wang, M., Carver, J.J., Phelan, V.V., Sanchez, L.M., Garg, N., Peng, Y., Nguyen, D.D., Watrous, J., Kapono, C.A., Luzzatto-Knaan, T., et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat Biotechnol 34 (2016), 828–837 GNPS is the first open-access platform for analysis, storage and sharing of MS/MS-data.
-
(2016)
Nat Biotechnol
, vol.34
, pp. 828-837
-
-
Wang, M.1
Carver, J.J.2
Phelan, V.V.3
Sanchez, L.M.4
Garg, N.5
Peng, Y.6
Nguyen, D.D.7
Watrous, J.8
Kapono, C.A.9
Luzzatto-Knaan, T.10
-
31
-
-
84994681226
-
Dereplication of peptidic natural products through database search of mass spectra
-
Mohimani, H., Gurevich, A., Mikheenko, A., Garg, N., Nothias, L.F., Ninomiya, A., Takada, K., Dorrestein, P.C., Pevzner, P.A., Dereplication of peptidic natural products through database search of mass spectra. Nat Chem Biol 13 (2017), 30–37.
-
(2017)
Nat Chem Biol
, vol.13
, pp. 30-37
-
-
Mohimani, H.1
Gurevich, A.2
Mikheenko, A.3
Garg, N.4
Nothias, L.F.5
Ninomiya, A.6
Takada, K.7
Dorrestein, P.C.8
Pevzner, P.A.9
-
32
-
-
84869792678
-
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
-
Ibrahim, A., Yang, L., Johnston, C., Liu, X., Ma, B., Magarvey, N.A., Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery. Proc Natl Acad Sci U S A 109 (2012), 19196–19201.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 19196-19201
-
-
Ibrahim, A.1
Yang, L.2
Johnston, C.3
Liu, X.4
Ma, B.5
Magarvey, N.A.6
-
33
-
-
84941944299
-
Exploration of nonribosomal peptide families with an automated informatic search algorithm
-
Yang, L., Ibrahim, A., Johnston, C.W., Skinnider, M.A., Ma, B., Magarvey, N.A., Exploration of nonribosomal peptide families with an automated informatic search algorithm. Chem Biol 22 (2015), 1259–1269.
-
(2015)
Chem Biol
, vol.22
, pp. 1259-1269
-
-
Yang, L.1
Ibrahim, A.2
Johnston, C.W.3
Skinnider, M.A.4
Ma, B.5
Magarvey, N.A.6
-
34
-
-
84990060398
-
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
-
Two independent computational tools, GRAPE and GARLIC, constitute a streamlined pipeline that predict monomers of a given secondary metabolite, and use information of the monomer composition to link the secondary metabolite with candidate BGCs.
-
Dejong, C.A., Chen, G.M., Li, H., Johnston, C.W., Edwards, M.R., Rees, P.N., Skinnider, M.A., Webster, A.L., Magarvey, N.A., Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching. Nat Chem Biol 12 (2016), 1007–1014 Two independent computational tools, GRAPE and GARLIC, constitute a streamlined pipeline that predict monomers of a given secondary metabolite, and use information of the monomer composition to link the secondary metabolite with candidate BGCs.
-
(2016)
Nat Chem Biol
, vol.12
, pp. 1007-1014
-
-
Dejong, C.A.1
Chen, G.M.2
Li, H.3
Johnston, C.W.4
Edwards, M.R.5
Rees, P.N.6
Skinnider, M.A.7
Webster, A.L.8
Magarvey, N.A.9
-
35
-
-
84939557642
-
Minimum Information about a Biosynthetic Gene cluster
-
MIBiG is a repository of standardized annotations on experimentally characterized BGCs and their secondary metabolite products.
-
Medema, M.H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J.B., Blin, K., de Bruijn, I., Chooi, Y.H., Claesen, J., Coates, R.C., et al. Minimum Information about a Biosynthetic Gene cluster. Nat Chem Biol 11 (2015), 625–631 MIBiG is a repository of standardized annotations on experimentally characterized BGCs and their secondary metabolite products.
-
(2015)
Nat Chem Biol
, vol.11
, pp. 625-631
-
-
Medema, M.H.1
Kottmann, R.2
Yilmaz, P.3
Cummings, M.4
Biggins, J.B.5
Blin, K.6
de Bruijn, I.7
Chooi, Y.H.8
Claesen, J.9
Coates, R.C.10
-
36
-
-
85016088764
-
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
-
Blin, K., Medema, M.H., Kottmann, R., Lee, S.Y., Weber, T., The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. Nucleic Acids Res 45 (2017), D555–D559.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D555-D559
-
-
Blin, K.1
Medema, M.H.2
Kottmann, R.3
Lee, S.Y.4
Weber, T.5
-
37
-
-
84939493603
-
IMG-ABC: a knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites
-
Hadjithomas, M., Chen, I.M., Chu, K., Ratner, A., Palaniappan, K., Szeto, E., Huang, J., Reddy, T.B., Cimermancic, P., Fischbach, M.A., et al. IMG-ABC: a knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites. MBio, 6, 2015, e00932.
-
(2015)
MBio
, vol.6
, pp. e00932
-
-
Hadjithomas, M.1
Chen, I.M.2
Chu, K.3
Ratner, A.4
Palaniappan, K.5
Szeto, E.6
Huang, J.7
Reddy, T.B.8
Cimermancic, P.9
Fischbach, M.A.10
-
38
-
-
85016142411
-
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
-
Hadjithomas, M., Chen, I.A., Chu, K., Huang, J., Ratner, A., Palaniappan, K., Andersen, E., Markowitz, V., Kyrpides, N.C., Ivanova, N.N., IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res 45 (2017), D560–D565.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D560-D565
-
-
Hadjithomas, M.1
Chen, I.A.2
Chu, K.3
Huang, J.4
Ratner, A.5
Palaniappan, K.6
Andersen, E.7
Markowitz, V.8
Kyrpides, N.C.9
Ivanova, N.N.10
-
39
-
-
84976875272
-
StreptomeDB 2.0-an extended resource of natural products produced by streptomycetes
-
Klementz, D., Doring, K., Lucas, X., Telukunta, K.K., Erxleben, A., Deubel, D., Erber, A., Santillana, I., Thomas, O.S., Bechthold, A., et al. StreptomeDB 2.0-an extended resource of natural products produced by streptomycetes. Nucleic Acids Res 44 (2016), D509–D514.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D509-D514
-
-
Klementz, D.1
Doring, K.2
Lucas, X.3
Telukunta, K.K.4
Erxleben, A.5
Deubel, D.6
Erber, A.7
Santillana, I.8
Thomas, O.S.9
Bechthold, A.10
-
40
-
-
84979258428
-
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
-
Flissi, A., Dufresne, Y., Michalik, J., Tonon, L., Janot, S., Noe, L., Jacques, P., Leclere, V., Pupin, M., Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. Nucleic Acids Res 44 (2016), D1113–D1118.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D1113-D1118
-
-
Flissi, A.1
Dufresne, Y.2
Michalik, J.3
Tonon, L.4
Janot, S.5
Noe, L.6
Jacques, P.7
Leclere, V.8
Pupin, M.9
-
41
-
-
84986556885
-
Norine: a powerful resource for novel nonribosomal peptide discovery
-
Pupin, M., Esmaeel, Q., Flissi, A., Dufresne, Y., Jacques, P., Leclère, V., Norine: a powerful resource for novel nonribosomal peptide discovery. Synth Syst Biotechnol 1 (2016), 89–94.
-
(2016)
Synth Syst Biotechnol
, vol.1
, pp. 89-94
-
-
Pupin, M.1
Esmaeel, Q.2
Flissi, A.3
Dufresne, Y.4
Jacques, P.5
Leclère, V.6
-
42
-
-
84979498105
-
APD3: the antimicrobial peptide database as a tool for research and education
-
Wang, G., Li, X., Wang, Z., APD3: the antimicrobial peptide database as a tool for research and education. Nucleic Acids Res 44 (2016), D1087–D1093.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D1087-D1093
-
-
Wang, G.1
Li, X.2
Wang, Z.3
-
43
-
-
84979519007
-
CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides
-
Waghu, F.H., Barai, R.S., Gurung, P., Idicula-Thomas, S., CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides. Nucleic Acids Res 44 (2016), D1094–D1097.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D1094-D1097
-
-
Waghu, F.H.1
Barai, R.S.2
Gurung, P.3
Idicula-Thomas, S.4
-
44
-
-
84960514155
-
DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides
-
Pirtskhalava, M., Gabrielian, A., Cruz, P., Griggs, H.L., Squires, R.B., Hurt, D.E., Grigolava, M., Chubinidze, M., Gogoladze, G., Vishnepolsky, B., et al. DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. Nucleic Acids Res 44 (2016), D1104–D1112.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D1104-D1112
-
-
Pirtskhalava, M.1
Gabrielian, A.2
Cruz, P.3
Griggs, H.L.4
Squires, R.B.5
Hurt, D.E.6
Grigolava, M.7
Chubinidze, M.8
Gogoladze, G.9
Vishnepolsky, B.10
-
45
-
-
85016137105
-
The ChEMBL database in 2017
-
Gaulton, A., Hersey, A., Nowotka, M., Bento, A.P., Chambers, J., Mendez, D., Mutowo, P., Atkinson, F., Bellis, L.J., Cibrian-Uhalte, E., et al. The ChEMBL database in 2017. Nucleic Acids Res 45 (2017), D945–D954.
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D945-D954
-
-
Gaulton, A.1
Hersey, A.2
Nowotka, M.3
Bento, A.P.4
Chambers, J.5
Mendez, D.6
Mutowo, P.7
Atkinson, F.8
Bellis, L.J.9
Cibrian-Uhalte, E.10
-
46
-
-
84937680248
-
ChemSpider-a tool for Natural Products research
-
Editorial, ChemSpider-a tool for Natural Products research. Nat Prod Rep 32 (2015), 1163–1164.
-
(2015)
Nat Prod Rep
, vol.32
, pp. 1163-1164
-
-
Editorial1
-
47
-
-
84976888261
-
ChEBI in 2016: improved services and an expanding collection of metabolites
-
Hastings, J., Owen, G., Dekker, A., Ennis, M., Kale, N., Muthukrishnan, V., Turner, S., Swainston, N., Mendes, P., Steinbeck, C., ChEBI in 2016: improved services and an expanding collection of metabolites. Nucleic Acids Res 44 (2016), D1214–D1219.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D1214-D1219
-
-
Hastings, J.1
Owen, G.2
Dekker, A.3
Ennis, M.4
Kale, N.5
Muthukrishnan, V.6
Turner, S.7
Swainston, N.8
Mendes, P.9
Steinbeck, C.10
-
48
-
-
84979984875
-
Metabolic engineering with systems biology tools to optimize production of prokaryotic secondary metabolites
-
Kim, H.U., Charusanti, P., Lee, S.Y., Weber, T., Metabolic engineering with systems biology tools to optimize production of prokaryotic secondary metabolites. Nat Prod Rep 33 (2016), 933–941.
-
(2016)
Nat Prod Rep
, vol.33
, pp. 933-941
-
-
Kim, H.U.1
Charusanti, P.2
Lee, S.Y.3
Weber, T.4
-
49
-
-
84983290764
-
CRISPy-web: An online resource to design sgRNAs for CRISPR applications
-
Blin, K., Pedersen, L.E., Weber, T., Lee, S.Y., CRISPy-web: An online resource to design sgRNAs for CRISPR applications. Synth Syst Biotechnol 1 (2016), 118–121.
-
(2016)
Synth Syst Biotechnol
, vol.1
, pp. 118-121
-
-
Blin, K.1
Pedersen, L.E.2
Weber, T.3
Lee, S.Y.4
-
50
-
-
84918813440
-
Metabolic engineering of antibiotic factories: new tools for antibiotic production in actinomycetes
-
Weber, T., Charusanti, P., Musiol-Kroll, E.M., Jiang, X., Tong, Y., Kim, H.U., Lee, S.Y., Metabolic engineering of antibiotic factories: new tools for antibiotic production in actinomycetes. Trends Biotechnol 33 (2015), 15–26.
-
(2015)
Trends Biotechnol
, vol.33
, pp. 15-26
-
-
Weber, T.1
Charusanti, P.2
Musiol-Kroll, E.M.3
Jiang, X.4
Tong, Y.5
Kim, H.U.6
Lee, S.Y.7
|