메뉴 건너뛰기




Volumn 44, Issue D1, 2016, Pages D1104-D1112

DBAASP v.2: An enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides

Author keywords

[No Author keywords available]

Indexed keywords

POLYPEPTIDE ANTIBIOTIC AGENT; RIBOSOME PROTEIN; ANTIINFECTIVE AGENT; CYTOTOXIN; PEPTIDE;

EID: 84960514155     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1174     Document Type: Article
Times cited : (178)

References (30)
  • 1
    • 84856460625 scopus 로고    scopus 로고
    • Therapeutic potential of host defense peptides in antibiotic-resistant infections
    • Afacan, N.J., Yeung, A.T., Pena, O.M. and Hancock, R.E. (2012) Therapeutic potential of host defense peptides in antibiotic-resistant infections. Curr. Pharm. Des., 18, 807-819.
    • (2012) Curr. Pharm. Des. , vol.18 , pp. 807-819
    • Afacan, N.J.1    Yeung, A.T.2    Pena, O.M.3    Hancock, R.E.4
  • 2
    • 0032717886 scopus 로고    scopus 로고
    • Mechanism of the binding, insertion and destabilization of phospholipid bilayer membranes by α-helical antimicrobial and cell non-selective membrane-lytic peptides
    • Shai, Y (1999) Mechanism of the binding, insertion and destabilization of phospholipid bilayer membranes by α-helical antimicrobial and cell non-selective membrane-lytic peptides. Biochim. Biophys. Acta, 1462, 55-70.
    • (1999) Biochim. Biophys. Acta , vol.1462 , pp. 55-70
    • Shai, Y.1
  • 3
    • 79953805263 scopus 로고    scopus 로고
    • Insights into the mechanisms of action of host defence peptides from biophysicaland structural investigations
    • Bechinger, B. (2011) Insights into the mechanisms of action of host defence peptides from biophysicaland structural investigations. J. Pept. Sci., 17, 306-314.
    • (2011) J. Pept. Sci. , vol.17 , pp. 306-314
    • Bechinger, B.1
  • 4
    • 33645834508 scopus 로고    scopus 로고
    • Experimental evolution of resistance to an antimicrobial peptide
    • Perron, G.G., Zasloff, M. and Bell, G. (2006) Experimental evolution of resistance to an antimicrobial peptide. Proc. Biol. Sci., 273, 251-256.
    • (2006) Proc. Biol. Sci. , vol.273 , pp. 251-256
    • Perron, G.G.1    Zasloff, M.2    Bell, G.3
  • 6
    • 84946027595 scopus 로고    scopus 로고
    • Database resources of the national center for biotechnology information
    • NCBI Resource Coordinators. (2015) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 43, D6-D17.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D6-D17
  • 10
    • 67650099787 scopus 로고    scopus 로고
    • ACEMD: Accelerated molecular dynamics simulations in the microseconds timescale
    • Harvey, M., Giupponi, G. and De Fabritiis, G. (2009) ACEMD: accelerated molecular dynamics simulations in the microseconds timescale. J. Chem. Theory Comput., 5, 1632-1639.
    • (2009) J. Chem. Theory Comput. , vol.5 , pp. 1632-1639
    • Harvey, M.1    Giupponi, G.2    De Fabritiis, G.3
  • 12
    • 67650500988 scopus 로고    scopus 로고
    • CHARMM: The biomolecular simulation program
    • Brooks, B.R. and Brooks, C.L. (2009) CHARMM: the biomolecular simulation program. J. Comput. Chem., 30, 1545-1614.
    • (2009) J. Comput. Chem. , vol.30 , pp. 1545-1614
    • Brooks, B.R.1    Brooks, C.L.2
  • 13
    • 0028972304 scopus 로고
    • C alpha-based torsion angles: A simple tool to analyze protein conformational changes
    • Flocco, M.M. and Mowbray, S.L. (1995) C alpha-based torsion angles: a simple tool to analyze protein conformational changes. Protein Sci., 4, 2118-2122.
    • (1995) Protein Sci. , vol.4 , pp. 2118-2122
    • Flocco, M.M.1    Mowbray, S.L.2
  • 14
    • 84979541921 scopus 로고    scopus 로고
    • Analysis and visual summarization of molecular dynamics simulation
    • Devadoss, F.R. and Paul, R.V. (2014) Analysis and visual summarization of molecular dynamics simulation. J. Cheminform., 6, O16.
    • (2014) J. Cheminform. , vol.6 , pp. O16
    • Devadoss, F.R.1    Paul, R.V.2
  • 15
    • 0038161052 scopus 로고    scopus 로고
    • Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
    • Gray, J.J., Moughon, S., Wang, C., Schueler-Furman, O., Kuhlman, B., Rohl, C.A. and Baker, D. (2003) Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J. Mol. Biol., 331, 281-299.
    • (2003) J. Mol. Biol. , vol.331 , pp. 281-299
    • Gray, J.J.1    Moughon, S.2    Wang, C.3    Schueler-Furman, O.4    Kuhlman, B.5    Rohl, C.A.6    Baker, D.7
  • 16
    • 78149421275 scopus 로고    scopus 로고
    • Simulaid: A simulation facilitator and analysis program
    • Mezei, M. (2010) Simulaid: a simulation facilitator and analysis program. J. Comp. Chem., 31, 2658-2668.
    • (2010) J. Comp. Chem. , vol.31 , pp. 2658-2668
    • Mezei, M.1
  • 17
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • The UniProt Consortium. (2015) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
  • 20
    • 84891793411 scopus 로고    scopus 로고
    • AVPdb: A database of experimentally validated antiviral peptides targeting medically important viruses
    • Qureshi, A., Thakur, N., Tandon, H. and Kumar, M. (2014) AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses. Nucleic Acids Res., 42, D1147-D1153.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D1147-D1153
    • Qureshi, A.1    Thakur, N.2    Tandon, H.3    Kumar, M.4
  • 21
    • 38349095584 scopus 로고    scopus 로고
    • BACTIBASE: A new web-accessible database for bacteriocin characterization
    • Hammami, R., Zouhir, A., Ben Hamida, J. and Fliss, I. (2007) BACTIBASE: a new web-accessible database for bacteriocin characterization. BMC Microbiology. 7, 89.
    • (2007) BMC Microbiology , vol.7 , pp. 89
    • Hammami, R.1    Zouhir, A.2    Ben Hamida, J.3    Fliss, I.4
  • 23
    • 33846108632 scopus 로고    scopus 로고
    • Defensins knowledgebase: A manually curated database and information source focused on the defensins family of antimicrobial peptides
    • Seebah, S., Suresh, A., Zhuo, S., Choong, Y.H., Chua, H., Chuon, D., Beuerman, R. and Verma, C. (2007) Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides. Nucleic Acids Res., 35, D265-D268.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D265-D268
    • Seebah, S.1    Suresh, A.2    Zhuo, S.3    Choong, Y.H.4    Chua, H.5    Chuon, D.6    Beuerman, R.7    Verma, C.8
  • 24
    • 0346494756 scopus 로고    scopus 로고
    • The peptaibol database: A database for sequences and structures of naturally occurring peptaibols
    • Whitmore, L. and Wallace, B.A. (2004) The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols. Nucleic Acids Res., 32, D593-D594.
    • (2004) Nucleic Acids Res. , vol.32 , pp. D593-D594
    • Whitmore, L.1    Wallace, B.A.2
  • 26
    • 58149187882 scopus 로고    scopus 로고
    • APD2: The updated antimicrobial peptide database and its application in peptide design
    • Wang, G., Li, X. and Wang, Z. (2009) APD2: the updated antimicrobial peptide database and its application in peptide design. Nucleic Acids Res., 37, D933-D937.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D933-D937
    • Wang, G.1    Li, X.2    Wang, Z.3
  • 28
    • 84876527534 scopus 로고    scopus 로고
    • Library of apicomplexan metabolic pathways: A manually curated database for metabolic pathways of apicomplexan parasites
    • Shanmugasundram, A., Gonzalez-Galarza, F.F., Wastling, J.M., Vasieva, O. and Jones, A.R. (2013) Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. Nucleic Acids Res., 41, D706-D713.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D706-D713
    • Shanmugasundram, A.1    Gonzalez-Galarza, F.F.2    Wastling, J.M.3    Vasieva, O.4    Jones, A.R.5
  • 30
    • 84901642563 scopus 로고    scopus 로고
    • Prediction of linearcationic antimicrobial peptides based on characteristics responsible for their interaction with the membranes
    • Vishnepolsky, B. and Pirtskhalava, M. (2014) Prediction of linearcationic antimicrobial peptides based on characteristics responsible for their interaction with the membranes. J. Chem. Inf. Model., 54, 1512-1523.
    • (2014) J. Chem. Inf. Model , vol.54 , pp. 1512-1523
    • Vishnepolsky, B.1    Pirtskhalava, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.