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Volumn 171, Issue 4, 2017, Pages 934-949.e15

Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab

(25)  Riaz, Nadeem a   Havel, Jonathan J a   Makarov, Vladimir a   Desrichard, Alexis a   Urba, Walter J b   Sims, Jennifer S a   Hodi, F Stephen c   Martín Algarra, Salvador d   Mandal, Rajarsi a   Sharfman, William H e   Bhatia, Shailender f   Hwu, Wen Jen g   Gajewski, Thomas F h   Slingluff, Craig L i   Chowell, Diego a   Kendall, Sviatoslav M a   Chang, Han j   Shah, Rachna a   Kuo, Fengshen a   Morris, Luc G T a   more..


Author keywords

clonal evolution clonal selection; immunotherapy; ipilimumab; melanoma; neoantigen load; nivolumab; T cell receptor repertoire; tumor immune evasion; tumor microenvironment; tumor mutation load tumor mutation burden

Indexed keywords

ANTIGEN; IPILIMUMAB; NIVOLUMAB; T LYMPHOCYTE RECEPTOR; TRANSCRIPTOME; ANTINEOPLASTIC AGENT; MONOCLONAL ANTIBODY; PROGRAMMED DEATH 1 RECEPTOR;

EID: 85031295254     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2017.09.028     Document Type: Article
Times cited : (1520)

References (73)
  • 2
    • 37249022873 scopus 로고    scopus 로고
    • Standardizing methods to address clonality in population studies
    • Arnaud-Haond, S., Duarte, C.M., Alberto, F., Serrão, E.A., Standardizing methods to address clonality in population studies. Mol. Ecol. 16 (2007), 5115–5139.
    • (2007) Mol. Ecol. , vol.16 , pp. 5115-5139
    • Arnaud-Haond, S.1    Duarte, C.M.2    Alberto, F.3    Serrão, E.A.4
  • 5
    • 84935009372 scopus 로고    scopus 로고
    • Genomic classification of cutaneous melanoma
    • Cancer Genome Atlas Network. Genomic classification of cutaneous melanoma. Cell 161 (2015), 1681–1696.
    • (2015) Cell , vol.161 , pp. 1681-1696
  • 8
    • 84982946696 scopus 로고    scopus 로고
    • Analysis of immune signatures in longitudinal tumor samples yields insight into biomarkers of response and mechanisms of resistance to immune checkpoint blockade
    • Chen, P.L., Roh, W., Reuben, A., Cooper, Z.A., Spencer, C.N., Prieto, P.A., Miller, J.P., Bassett, R.L., Gopalakrishnan, V., Wani, K., et al. Analysis of immune signatures in longitudinal tumor samples yields insight into biomarkers of response and mechanisms of resistance to immune checkpoint blockade. Cancer Discov. 6 (2016), 827–837.
    • (2016) Cancer Discov. , vol.6 , pp. 827-837
    • Chen, P.L.1    Roh, W.2    Reuben, A.3    Cooper, Z.A.4    Spencer, C.N.5    Prieto, P.A.6    Miller, J.P.7    Bassett, R.L.8    Gopalakrishnan, V.9    Wani, K.10
  • 11
    • 85032695906 scopus 로고    scopus 로고
    • Dako (2016). PD-L1 IHC 28-8 pharmDx.
    • Dako (2016). PD-L1 IHC 28-8 pharmDx. https://www.accessdata.fda.gov/cdrh_docs/pdf15/P150027c.pdf.
  • 13
    • 85010652953 scopus 로고    scopus 로고
    • Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy
    • Davoli, T., Uno, H., Wooten, E.C., Elledge, S.J., Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy. Science, 355, 2017, eaaf8399.
    • (2017) Science , vol.355 , pp. eaaf8399
    • Davoli, T.1    Uno, H.2    Wooten, E.C.3    Elledge, S.J.4
  • 21
    • 85007598523 scopus 로고    scopus 로고
    • Abstract CT001: durable, long-term survival in previously treated patients with advanced melanoma (MEL) who received nivolumab (NIVO) monotherapy in a phase I trial
    • CT001–CT001
    • Hodi, F.S., Kluger, H., Sznol, M., Carvajal, R., Lawrence, D., Atkins, M., Powderly, J., Sharfman, W., Puzanov, I., Smith, D., et al. Abstract CT001: durable, long-term survival in previously treated patients with advanced melanoma (MEL) who received nivolumab (NIVO) monotherapy in a phase I trial. Cancer Res., 76, 2016 CT001–CT001.
    • (2016) Cancer Res. , vol.76
    • Hodi, F.S.1    Kluger, H.2    Sznol, M.3    Carvajal, R.4    Lawrence, D.5    Atkins, M.6    Powderly, J.7    Sharfman, W.8    Puzanov, I.9    Smith, D.10
  • 24
    • 84928771999 scopus 로고    scopus 로고
    • T cell exclusion, immune privilege, and the tumor microenvironment
    • Joyce, J.A., Fearon, D.T., T cell exclusion, immune privilege, and the tumor microenvironment. Science 348 (2015), 74–80.
    • (2015) Science , vol.348 , pp. 74-80
    • Joyce, J.A.1    Fearon, D.T.2
  • 28
    • 85041205158 scopus 로고    scopus 로고
    • Overall survival in patients with advanced melanoma who received nivolumab versus investigator's choice chemotherapy in CheckMate 037: a randomized, controlled, open-label phase III trial
    • Larkin, J., Minor, D., D'Angelo, S., Neyns, B., Smylie, M., Miller, W.H. Jr., Gutzmer, R., Linette, G., Chmielowski, B., Lao, C.D., et al. Overall survival in patients with advanced melanoma who received nivolumab versus investigator's choice chemotherapy in CheckMate 037: a randomized, controlled, open-label phase III trial. J. Clin. Oncol., 2017, 10.1200/JCO.2016.71.8023.
    • (2017) J. Clin. Oncol.
    • Larkin, J.1    Minor, D.2    D'Angelo, S.3    Neyns, B.4    Smylie, M.5    Miller, W.H.6    Gutzmer, R.7    Linette, G.8    Chmielowski, B.9    Lao, C.D.10
  • 31
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M.I., Huber, W., Anders, S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 2014, 550.
    • (2014) Genome Biol. , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 32
    • 84928254065 scopus 로고    scopus 로고
    • Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
    • McGranahan, N., Favero, F., de Bruin, E.C., Birkbak, N.J., Szallasi, Z., Swanton, C., Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Sci. Transl. Med., 7, 2015, 283ra54.
    • (2015) Sci. Transl. Med. , vol.7 , pp. 283ra54
    • McGranahan, N.1    Favero, F.2    de Bruin, E.C.3    Birkbak, N.J.4    Szallasi, Z.5    Swanton, C.6
  • 40
    • 84928761118 scopus 로고    scopus 로고
    • Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
    • Rizvi, N.A., Hellmann, M.D., Snyder, A., Kvistborg, P., Makarov, V., Havel, J.J., Lee, W., Yuan, J., Wong, P., Ho, T.S., et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348 (2015), 124–128.
    • (2015) Science , vol.348 , pp. 124-128
    • Rizvi, N.A.1    Hellmann, M.D.2    Snyder, A.3    Kvistborg, P.4    Makarov, V.5    Havel, J.J.6    Lee, W.7    Yuan, J.8    Wong, P.9    Ho, T.S.10
  • 43
    • 84920962202 scopus 로고    scopus 로고
    • Molecular and genetic properties of tumors associated with local immune cytolytic activity
    • Rooney, M.S., Shukla, S.A., Wu, C.J., Getz, G., Hacohen, N., Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160 (2015), 48–61.
    • (2015) Cell , vol.160 , pp. 48-61
    • Rooney, M.S.1    Shukla, S.A.2    Wu, C.J.3    Getz, G.4    Hacohen, N.5
  • 44
    • 84959577118 scopus 로고    scopus 로고
    • Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial
    • Rosenberg, J.E., Hoffman-Censits, J., Powles, T., van der Heijden, M.S., Balar, A.V., Necchi, A., Dawson, N., O'Donnell, P.H., Balmanoukian, A., Loriot, Y., et al. Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial. Lancet 387 (2016), 1909–1920.
    • (2016) Lancet , vol.387 , pp. 1909-1920
    • Rosenberg, J.E.1    Hoffman-Censits, J.2    Powles, T.3    van der Heijden, M.S.4    Balar, A.V.5    Necchi, A.6    Dawson, N.7    O'Donnell, P.H.8    Balmanoukian, A.9    Loriot, Y.10
  • 45
    • 84959467752 scopus 로고    scopus 로고
    • DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
    • Rosenthal, R., McGranahan, N., Herrero, J., Taylor, B.S., Swanton, C., DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution. Genome Biol., 17, 2016, 31.
    • (2016) Genome Biol. , vol.17 , pp. 31
    • Rosenthal, R.1    McGranahan, N.2    Herrero, J.3    Taylor, B.S.4    Swanton, C.5
  • 47
    • 85002509838 scopus 로고    scopus 로고
    • Human melanomas and ovarian cancers overexpressing mechanical barrier molecule genes lack immune signatures and have increased patient mortality risk
    • Salerno, E.P., Bedognetti, D., Mauldin, I.S., Deacon, D.H., Shea, S.M., Pinczewski, J., Obeid, J.M., Coukos, G., Wang, E., Gajewski, T.F., et al. Human melanomas and ovarian cancers overexpressing mechanical barrier molecule genes lack immune signatures and have increased patient mortality risk. OncoImmunology, 5, 2016, e1240857.
    • (2016) OncoImmunology , vol.5 , pp. e1240857
    • Salerno, E.P.1    Bedognetti, D.2    Mauldin, I.S.3    Deacon, D.H.4    Shea, S.M.5    Pinczewski, J.6    Obeid, J.M.7    Coukos, G.8    Wang, E.9    Gajewski, T.F.10
  • 48
    • 84864153492 scopus 로고    scopus 로고
    • Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs
    • Saunders, C.T., Wong, W.S., Swamy, S., Becq, J., Murray, L.J., Cheetham, R.K., Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 28 (2012), 1811–1817.
    • (2012) Bioinformatics , vol.28 , pp. 1811-1817
    • Saunders, C.T.1    Wong, W.S.2    Swamy, S.3    Becq, J.4    Murray, L.J.5    Cheetham, R.K.6
  • 49
    • 84928770388 scopus 로고    scopus 로고
    • Neoantigens in cancer immunotherapy
    • Schumacher, T.N., Schreiber, R.D., Neoantigens in cancer immunotherapy. Science 348 (2015), 69–74.
    • (2015) Science , vol.348 , pp. 69-74
    • Schumacher, T.N.1    Schreiber, R.D.2
  • 50
    • 84988924813 scopus 로고    scopus 로고
    • FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
    • Shen, R., Seshan, V.E., FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing. Nucleic Acids Res., 44, 2016, e131.
    • (2016) Nucleic Acids Res. , vol.44 , pp. e131
    • Shen, R.1    Seshan, V.E.2
  • 54
    • 84883863501 scopus 로고    scopus 로고
    • Up-regulation of PD-L1, IDO, and T(regs) in the melanoma tumor microenvironment is driven by CD8(+) T cells
    • Spranger, S., Spaapen, R.M., Zha, Y., Williams, J., Meng, Y., Ha, T.T., Gajewski, T.F., Up-regulation of PD-L1, IDO, and T(regs) in the melanoma tumor microenvironment is driven by CD8(+) T cells. Sci. Transl. Med., 5, 2013, 200ra116.
    • (2013) Sci. Transl. Med. , vol.5 , pp. 200ra116
    • Spranger, S.1    Spaapen, R.M.2    Zha, Y.3    Williams, J.4    Meng, Y.5    Ha, T.T.6    Gajewski, T.F.7
  • 55
    • 84936953099 scopus 로고    scopus 로고
    • Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
    • Spranger, S., Bao, R., Gajewski, T.F., Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity. Nature 523 (2015), 231–235.
    • (2015) Nature , vol.523 , pp. 231-235
    • Spranger, S.1    Bao, R.2    Gajewski, T.F.3
  • 58
    • 84942887332 scopus 로고    scopus 로고
    • Differential expression of immune-regulatory genes associated with PD-L1 display in melanoma: implications for PD-1 pathway blockade
    • Taube, J.M., Young, G.D., McMiller, T.L., Chen, S., Salas, J.T., Pritchard, T.S., Xu, H., Meeker, A.K., Fan, J., Cheadle, C., et al. Differential expression of immune-regulatory genes associated with PD-L1 display in melanoma: implications for PD-1 pathway blockade. Clin. Cancer Res. 21 (2015), 3969–3976.
    • (2015) Clin. Cancer Res. , vol.21 , pp. 3969-3976
    • Taube, J.M.1    Young, G.D.2    McMiller, T.L.3    Chen, S.4    Salas, J.T.5    Pritchard, T.S.6    Xu, H.7    Meeker, A.K.8    Fan, J.9    Cheadle, C.10
  • 60
    • 84963621254 scopus 로고    scopus 로고
    • Mechanism-driven biomarkers to guide immune checkpoint blockade in cancer therapy
    • Topalian, S.L., Taube, J.M., Anders, R.A., Pardoll, D.M., Mechanism-driven biomarkers to guide immune checkpoint blockade in cancer therapy. Nat. Rev. Cancer 16 (2016), 275–287.
    • (2016) Nat. Rev. Cancer , vol.16 , pp. 275-287
    • Topalian, S.L.1    Taube, J.M.2    Anders, R.A.3    Pardoll, D.M.4
  • 65
    • 85084273563 scopus 로고    scopus 로고
    • Baseline tumor T cell receptor (TcR) sequencing analysis and neo antigen load is associated with benefit in melanoma patients receiving sequential nivolumab and ipilimumab
    • 1047O
    • Weber, J., Horak, C., Hodi, F.S., Chang, H., Woods, D., Sanders, C., Robins, H., Yusko, E., Baseline tumor T cell receptor (TcR) sequencing analysis and neo antigen load is associated with benefit in melanoma patients receiving sequential nivolumab and ipilimumab. Ann. Oncol., 27, 2016 1047O.
    • (2016) Ann. Oncol. , vol.27
    • Weber, J.1    Horak, C.2    Hodi, F.S.3    Chang, H.4    Woods, D.5    Sanders, C.6    Robins, H.7    Yusko, E.8
  • 69
    • 84890189765 scopus 로고    scopus 로고
    • OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes
    • Yau, C., OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes. Bioinformatics 29 (2013), 2482–2484.
    • (2013) Bioinformatics , vol.29 , pp. 2482-2484
    • Yau, C.1
  • 71
    • 84860718683 scopus 로고    scopus 로고
    • clusterProfiler: an R package for comparing biological themes among gene clusters
    • Yu, G., Wang, L.G., Han, Y., He, Q.Y., clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 16 (2012), 284–287.
    • (2012) OMICS , vol.16 , pp. 284-287
    • Yu, G.1    Wang, L.G.2    Han, Y.3    He, Q.Y.4


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