-
1
-
-
0017167185
-
The clonal evolution of tumor cell populations
-
Nowell PC. The clonal evolution of tumor cell populations. Science. 1976; 194:23-28.
-
(1976)
Science
, vol.194
, pp. 23-28
-
-
Nowell, P.C.1
-
2
-
-
84856013431
-
Clonal evolution in cancer
-
Greaves M and Maley CC. Clonal evolution in cancer. Nature. 2012; 481:306-313.
-
(2012)
Nature
, vol.481
, pp. 306-313
-
-
Greaves, M.1
Maley, C.C.2
-
3
-
-
84907855592
-
Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
-
de Bruin EC, McGranahan N, Mitter R, Salm M, Wedge DC, Yates L, Jamal-Hanjani M, Shafi S, Murugaesu N, Rowan AJ, Gronroos E, Muhammad MA, Horswell S, Gerlinger M, Varela I, Jones D, et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science. 2014; 346:251-256.
-
(2014)
Science
, vol.346
, pp. 251-256
-
-
de Bruin, E.C.1
McGranahan, N.2
Mitter, R.3
Salm, M.4
Wedge, D.C.5
Yates, L.6
Jamal-Hanjani, M.7
Shafi, S.8
Murugaesu, N.9
Rowan, A.J.10
Gronroos, E.11
Muhammad, M.A.12
Horswell, S.13
Gerlinger, M.14
Varela, I.15
Jones, D.16
-
4
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger M, Rowan AJ, Horswell S, Larkin J, Endesfelder D, Gronroos E, Martinez P, Matthews N, Stewart A, Tarpey P, Varela I, Phillimore B, Begum S, McDonald NQ, Butler A, Jones D, et al. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. The New England journal of medicine. 2012; 366:883-892.
-
(2012)
The New England journal of medicine
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
Rowan, A.J.2
Horswell, S.3
Larkin, J.4
Endesfelder, D.5
Gronroos, E.6
Martinez, P.7
Matthews, N.8
Stewart, A.9
Tarpey, P.10
Varela, I.11
Phillimore, B.12
Begum, S.13
McDonald, N.Q.14
Butler, A.15
Jones, D.16
-
5
-
-
84936890500
-
Subclonal diversification of primary breast cancer revealed by multiregion sequencing
-
Yates LR, Gerstung M, Knappskog S, Desmedt C, Gundem G, Van Loo P, Aas T, Alexandrov LB, Larsimont D, Davies H, Li Y, Ju YS, Ramakrishna M, Haugland HK, Lilleng PK, Nik-Zainal S, et al. Subclonal diversification of primary breast cancer revealed by multiregion sequencing. Nature medicine. 2015; 21:751-759.
-
(2015)
Nature medicine
, vol.21
, pp. 751-759
-
-
Yates, L.R.1
Gerstung, M.2
Knappskog, S.3
Desmedt, C.4
Gundem, G.5
Van Loo, P.6
Aas, T.7
Alexandrov, L.B.8
Larsimont, D.9
Davies, H.10
Li, Y.11
Ju, Y.S.12
Ramakrishna, M.13
Haugland, H.K.14
Lilleng, P.K.15
Nik-Zainal, S.16
-
6
-
-
84939165961
-
Intra-tumor genetic heterogeneity and alternative driver genetic alterations in breast cancers with heterogeneous HER2 gene amplification
-
Ng CK, Martelotto LG, Gauthier A, Wen HC, Piscuoglio S, Lim RS, Cowell CF, Wilkerson PM, Wai P, Rodrigues DN, Arnould L, Geyer FC, Bromberg SE, Lacroix-Triki M, Penault-Llorca F, Giard S, et al. Intra-tumor genetic heterogeneity and alternative driver genetic alterations in breast cancers with heterogeneous HER2 gene amplification. Genome biology. 2015; 16:107.
-
(2015)
Genome biology
, vol.16
, pp. 107
-
-
Ng, C.K.1
Martelotto, L.G.2
Gauthier, A.3
Wen, H.C.4
Piscuoglio, S.5
Lim, R.S.6
Cowell, C.F.7
Wilkerson, P.M.8
Wai, P.9
Rodrigues, D.N.10
Arnould, L.11
Geyer, F.C.12
Bromberg, S.E.13
Lacroix-Triki, M.14
Penault-Llorca, F.15
Giard, S.16
-
7
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin N, Kendall J, Troge J, Andrews P, Rodgers L, McIndoo J, Cook K, Stepansky A, Levy D, Esposito D, Muthuswamy L, Krasnitz A, McCombie WR, Hicks J and Wigler M. Tumour evolution inferred by single-cell sequencing. Nature. 2011; 472:90-94.
-
(2011)
Nature
, vol.472
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
Andrews, P.4
Rodgers, L.5
McIndoo, J.6
Cook, K.7
Stepansky, A.8
Levy, D.9
Esposito, D.10
Muthuswamy, L.11
Krasnitz, A.12
McCombie, W.R.13
Hicks, J.14
Wigler, M.15
-
8
-
-
84906238686
-
Clonal evolution in breast cancer revealed by single nucleus genome sequencing
-
Wang Y, Waters J, Leung ML, Unruh A, Roh W, Shi X, Chen K, Scheet P, Vattathil S, Liang H, Multani A, Zhang H, Zhao R, Michor F, Meric-Bernstam F and Navin NE. Clonal evolution in breast cancer revealed by single nucleus genome sequencing. Nature. 2014; 512:155-160.
-
(2014)
Nature
, vol.512
, pp. 155-160
-
-
Wang, Y.1
Waters, J.2
Leung, M.L.3
Unruh, A.4
Roh, W.5
Shi, X.6
Chen, K.7
Scheet, P.8
Vattathil, S.9
Liang, H.10
Multani, A.11
Zhang, H.12
Zhao, R.13
Michor, F.14
Meric-Bernstam, F.15
Navin, N.E.16
-
9
-
-
84925229458
-
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
-
Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, Gelmon K, Chia S, Mar C, Wan A, Laks E, Biele J, Shumansky K, Rosner J, McPherson A, Nielsen C, et al. Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution. Nature. 2015; 518:422-426.
-
(2015)
Nature
, vol.518
, pp. 422-426
-
-
Eirew, P.1
Steif, A.2
Khattra, J.3
Ha, G.4
Yap, D.5
Farahani, H.6
Gelmon, K.7
Chia, S.8
Mar, C.9
Wan, A.10
Laks, E.11
Biele, J.12
Shumansky, K.13
Rosner, J.14
McPherson, A.15
Nielsen, C.16
-
10
-
-
84861550476
-
The life history of 21 breast cancers
-
Nik-Zainal S, Van Loo P, Wedge DC, Alexandrov LB, Greenman CD, Lau KW, Raine K, Jones D, Marshall J, Ramakrishna M, Shlien A, Cooke SL, Hinton J, Menzies A, Stebbings LA, Leroy C, et al. The life history of 21 breast cancers. Cell. 2012; 149:994-1007.
-
(2012)
Cell
, vol.149
, pp. 994-1007
-
-
Nik-Zainal, S.1
Van Loo, P.2
Wedge, D.C.3
Alexandrov, L.B.4
Greenman, C.D.5
Lau, K.W.6
Raine, K.7
Jones, D.8
Marshall, J.9
Ramakrishna, M.10
Shlien, A.11
Cooke, S.L.12
Hinton, J.13
Menzies, A.14
Stebbings, L.A.15
Leroy, C.16
-
11
-
-
84928254065
-
Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
-
McGranahan N, Favero F, de Bruin EC, Birkbak NJ, Szallasi Z and Swanton C. Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Science translational medicine. 2015; 7:283ra254.
-
(2015)
Science translational medicine
, vol.7
-
-
McGranahan, N.1
Favero, F.2
de Bruin, E.C.3
Birkbak, N.J.4
Szallasi, Z.5
Swanton, C.6
-
12
-
-
84862526929
-
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
-
Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature. 2012; 486:395-399.
-
(2012)
Nature
, vol.486
, pp. 395-399
-
-
Shah, S.P.1
Roth, A.2
Goya, R.3
Oloumi, A.4
Ha, G.5
Zhao, Y.6
Turashvili, G.7
Ding, J.8
Tse, K.9
Haffari, G.10
Bashashati, A.11
Prentice, L.M.12
Khattra, J.13
Burleigh, A.14
Yap, D.15
Bernard, V.16
-
13
-
-
77951139631
-
Genome remodelling in a basal-like breast cancer metastasis and xenograft
-
Ding L, Ellis MJ, Li S, Larson DE, Chen K, Wallis JW, Harris CC, McLellan MD, Fulton RS, Fulton LL, Abbott RM, Hoog J, Dooling DJ, Koboldt DC, Schmidt H, Kalicki J, et al. Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature. 2010; 464:999-1005.
-
(2010)
Nature
, vol.464
, pp. 999-1005
-
-
Ding, L.1
Ellis, M.J.2
Li, S.3
Larson, D.E.4
Chen, K.5
Wallis, J.W.6
Harris, C.C.7
McLellan, M.D.8
Fulton, R.S.9
Fulton, L.L.10
Abbott, R.M.11
Hoog, J.12
Dooling, D.J.13
Koboldt, D.C.14
Schmidt, H.15
Kalicki, J.16
-
14
-
-
84897954204
-
PyClone: statistical inference of clonal population structure in cancer
-
Roth A, Khattra J, Yap D, Wan A, Laks E, Biele J, Ha G, Aparicio S, Bouchard-Cote A and Shah SP. PyClone: statistical inference of clonal population structure in cancer. Nature methods. 2014; 11:396-398.
-
(2014)
Nature methods
, vol.11
, pp. 396-398
-
-
Roth, A.1
Khattra, J.2
Yap, D.3
Wan, A.4
Laks, E.5
Biele, J.6
Ha, G.7
Aparicio, S.8
Bouchard-Cote, A.9
Shah, S.P.10
-
15
-
-
84954242823
-
Pan-cancer analysis of the extent and consequences of intratumor heterogeneity
-
Andor N, Graham TA, Jansen M, Xia LC, Aktipis CA, Petritsch C, Ji HP and Maley CC. Pan-cancer analysis of the extent and consequences of intratumor heterogeneity. Nature medicine. 2016; 22:105-113.
-
(2016)
Nature medicine
, vol.22
, pp. 105-113
-
-
Andor, N.1
Graham, T.A.2
Jansen, M.3
Xia, L.C.4
Aktipis, C.A.5
Petritsch, C.6
Ji, H.P.7
Maley, C.C.8
-
16
-
-
84891370404
-
EXPANDS: expanding ploidy and allele frequency on nested subpopulations
-
Andor N, Harness JV, Muller S, Mewes HW and Petritsch C. EXPANDS: expanding ploidy and allele frequency on nested subpopulations. Bioinformatics. 2014; 30:50-60.
-
(2014)
Bioinformatics
, vol.30
, pp. 50-60
-
-
Andor, N.1
Harness, J.V.2
Muller, S.3
Mewes, H.W.4
Petritsch, C.5
-
17
-
-
84862776906
-
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
-
Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, McLellan MD, McMichael JF, Wallis JW, Lu C, Shen D, Harris CC, Dooling DJ, et al. Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature. 2012; 481:506-510.
-
(2012)
Nature
, vol.481
, pp. 506-510
-
-
Ding, L.1
Ley, T.J.2
Larson, D.E.3
Miller, C.A.4
Koboldt, D.C.5
Welch, J.S.6
Ritchey, J.K.7
Young, M.A.8
Lamprecht, T.9
McLellan, M.D.10
McMichael, J.F.11
Wallis, J.W.12
Lu, C.13
Shen, D.14
Harris, C.C.15
Dooling, D.J.16
-
18
-
-
84892373020
-
Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma
-
Johnson BE, Mazor T, Hong C, Barnes M, Aihara K, McLean CY, Fouse SD, Yamamoto S, Ueda H, Tatsuno K, Asthana S, Jalbert LE, Nelson SJ, Bollen AW, Gustafson WC, Charron E, et al. Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science. 2014; 343:189-193.
-
(2014)
Science
, vol.343
, pp. 189-193
-
-
Johnson, B.E.1
Mazor, T.2
Hong, C.3
Barnes, M.4
Aihara, K.5
McLean, C.Y.6
Fouse, S.D.7
Yamamoto, S.8
Ueda, H.9
Tatsuno, K.10
Asthana, S.11
Jalbert, L.E.12
Nelson, S.J.13
Bollen, A.W.14
Gustafson, W.C.15
Charron, E.16
-
19
-
-
73649102105
-
Preexistence and clonal selection of MET amplification in EGFR mutant NSCLC
-
Turke AB, Zejnullahu K, Wu YL, Song Y, Dias-Santagata D, Lifshits E, Toschi L, Rogers A, Mok T, Sequist L, Lindeman NI, Murphy C, Akhavanfard S, Yeap BY, Xiao Y, Capelletti M, et al. Preexistence and clonal selection of MET amplification in EGFR mutant NSCLC. Cancer cell. 2010; 17:77-88.
-
(2010)
Cancer cell
, vol.17
, pp. 77-88
-
-
Turke, A.B.1
Zejnullahu, K.2
Wu, Y.L.3
Song, Y.4
Dias-Santagata, D.5
Lifshits, E.6
Toschi, L.7
Rogers, A.8
Mok, T.9
Sequist, L.10
Lindeman, N.I.11
Murphy, C.12
Akhavanfard, S.13
Yeap, B.Y.14
Xiao, Y.15
Capelletti, M.16
-
20
-
-
84862999938
-
Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer
-
Misale S, Yaeger R, Hobor S, Scala E, Janakiraman M, Liska D, Valtorta E, Schiavo R, Buscarino M, Siravegna G, Bencardino K, Cercek A, Chen CT, Veronese S, Zanon C, Sartore-Bianchi A, et al. Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer. Nature. 2012; 486:532-536.
-
(2012)
Nature
, vol.486
, pp. 532-536
-
-
Misale, S.1
Yaeger, R.2
Hobor, S.3
Scala, E.4
Janakiraman, M.5
Liska, D.6
Valtorta, E.7
Schiavo, R.8
Buscarino, M.9
Siravegna, G.10
Bencardino, K.11
Cercek, A.12
Chen, C.T.13
Veronese, S.14
Zanon, C.15
Sartore-Bianchi, A.16
-
21
-
-
84857397985
-
Intratumoral heterogeneity of receptor tyrosine kinases EGFR and PDGFRA amplification in glioblastoma defines subpopulations with distinct growth factor response
-
Szerlip NJ, Pedraza A, Chakravarty D, Azim M, McGuire J, Fang Y, Ozawa T, Holland EC, Huse JT, Jhanwar S, Leversha MA, Mikkelsen T and Brennan CW. Intratumoral heterogeneity of receptor tyrosine kinases EGFR and PDGFRA amplification in glioblastoma defines subpopulations with distinct growth factor response. Proceedings of the National Academy of Sciences of the United States of America. 2012; 109:3041-3046.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 3041-3046
-
-
Szerlip, N.J.1
Pedraza, A.2
Chakravarty, D.3
Azim, M.4
McGuire, J.5
Fang, Y.6
Ozawa, T.7
Holland, E.C.8
Huse, J.T.9
Jhanwar, S.10
Leversha, M.A.11
Mikkelsen, T.12
Brennan, C.W.13
-
22
-
-
84924388105
-
Intra-tumor genetic heterogeneity and mortality in head and neck cancer: analysis of data from the Cancer Genome Atlas
-
Mroz EA, Tward AD, Hammon RJ, Ren Y and Rocco JW. Intra-tumor genetic heterogeneity and mortality in head and neck cancer: analysis of data from the Cancer Genome Atlas. PLoS medicine. 2015; 12:e1001786.
-
(2015)
PLoS medicine
, vol.12
-
-
Mroz, E.A.1
Tward, A.D.2
Hammon, R.J.3
Ren, Y.4
Rocco, J.W.5
-
23
-
-
23844534811
-
Reporting recommendations for tumor marker prognostic studies (REMARK)
-
McShane LM, Altman DG, Sauerbrei W, Taube SE, Gion M, Clark GM and Statistics Subcommittee of the NCIEWGoCD. Reporting recommendations for tumor marker prognostic studies (REMARK). Journal of the National Cancer Institute. 2005; 97:1180-1184.
-
(2005)
Journal of the National Cancer Institute
, vol.97
, pp. 1180-1184
-
-
McShane, L.M.1
Altman, D.G.2
Sauerbrei, W.3
Taube, S.E.4
Gion, M.5
Clark, G.M.6
-
24
-
-
78049248432
-
Allele-specific copy number analysis of tumors
-
Van Loo P, Nordgard SH, Lingjaerde OC, Russnes HG, Rye IH, Sun W, Weigman VJ, Marynen P, Zetterberg A, Naume B, Perou CM, Borresen-Dale AL and Kristensen VN. Allele-specific copy number analysis of tumors. Proceedings of the National Academy of Sciences of the United States of America. 2010; 107:16910-16915.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 16910-16915
-
-
Van Loo, P.1
Nordgard, S.H.2
Lingjaerde, O.C.3
Russnes, H.G.4
Rye, I.H.5
Sun, W.6
Weigman, V.J.7
Marynen, P.8
Zetterberg, A.9
Naume, B.10
Perou, C.M.11
Borresen-Dale, A.L.12
Kristensen, V.N.13
-
25
-
-
84885673911
-
Inferring tumour purity and stromal and immune cell admixture from expression data
-
Yoshihara K, Shahmoradgoli M, Martinez E, Vegesna R, Kim H, Torres-Garcia W, Trevino V, Shen H, Laird PW, Levine DA, Carter SL, Getz G, Stemke-Hale K, Mills GB and Verhaak RG. Inferring tumour purity and stromal and immune cell admixture from expression data. Nature communications. 2013; 4:2612.
-
(2013)
Nature communications
, vol.4
, pp. 2612
-
-
Yoshihara, K.1
Shahmoradgoli, M.2
Martinez, E.3
Vegesna, R.4
Kim, H.5
Torres-Garcia, W.6
Trevino, V.7
Shen, H.8
Laird, P.W.9
Levine, D.A.10
Carter, S.L.11
Getz, G.12
Stemke-Hale, K.13
Mills, G.B.14
Verhaak, R.G.15
-
26
-
-
84892699941
-
Heterogeneity of genomic evolution and mutational profiles in multiple myeloma
-
Bolli N, Avet-Loiseau H, Wedge DC, Van Loo P, Alexandrov LB, Martincorena I, Dawson KJ, Iorio F, Nik-Zainal S, Bignell GR, Hinton JW, Li Y, Tubio JM, McLaren S, S OM, Butler AP, et al. Heterogeneity of genomic evolution and mutational profiles in multiple myeloma. Nature communications. 2014; 5:2997.
-
(2014)
Nature communications
, vol.5
, pp. 2997
-
-
Bolli, N.1
Avet-Loiseau, H.2
Wedge, D.C.3
Van Loo, P.4
Alexandrov, L.B.5
Martincorena, I.6
Dawson, K.J.7
Iorio, F.8
Nik-Zainal, S.9
Bignell, G.R.10
Hinton, J.W.11
Li, Y.12
Tubio, J.M.13
McLaren, S.14
O'Meara, S.15
Butler, A.P.16
-
27
-
-
84874102335
-
Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
-
Landau DA, Carter SL, Stojanov P, McKenna A, Stevenson K, Lawrence MS, Sougnez C, Stewart C, Sivachenko A, Wang L, Wan Y, Zhang W, Shukla SA, Vartanov A, Fernandes SM, Saksena G, et al. Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell. 2013; 152:714-726.
-
(2013)
Cell
, vol.152
, pp. 714-726
-
-
Landau, D.A.1
Carter, S.L.2
Stojanov, P.3
McKenna, A.4
Stevenson, K.5
Lawrence, M.S.6
Sougnez, C.7
Stewart, C.8
Sivachenko, A.9
Wang, L.10
Wan, Y.11
Zhang, W.12
Shukla, S.A.13
Vartanov, A.14
Fernandes, S.M.15
Saksena, G.16
-
28
-
-
84881476503
-
High intratumor genetic heterogeneity is related to worse outcome in patients with head and neck squamous cell carcinoma
-
Mroz EA, Tward AD, Pickering CR, Myers JN, Ferris RL and Rocco JW. High intratumor genetic heterogeneity is related to worse outcome in patients with head and neck squamous cell carcinoma. Cancer. 2013; 119:3034-3042.
-
(2013)
Cancer
, vol.119
, pp. 3034-3042
-
-
Mroz, E.A.1
Tward, A.D.2
Pickering, C.R.3
Myers, J.N.4
Ferris, R.L.5
Rocco, J.W.6
-
29
-
-
84884997982
-
Emerging landscape of oncogenic signatures across human cancers
-
Ciriello G, Miller ML, Aksoy BA, Senbabaoglu Y, Schultz N and Sander C. Emerging landscape of oncogenic signatures across human cancers. Nature genetics. 2013; 45:1127-1133.
-
(2013)
Nature genetics
, vol.45
, pp. 1127-1133
-
-
Ciriello, G.1
Miller, M.L.2
Aksoy, B.A.3
Senbabaoglu, Y.4
Schultz, N.5
Sander, C.6
-
30
-
-
84928761118
-
Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
-
Rizvi NA, Hellmann MD, Snyder A, Kvistborg P, Makarov V, Havel JJ, Lee W, Yuan J, Wong P, Ho TS, Miller ML, Rekhtman N, Moreira AL, Ibrahim F, Bruggeman C, Gasmi B, et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science. 2015; 348:124-128.
-
(2015)
Science
, vol.348
, pp. 124-128
-
-
Rizvi, N.A.1
Hellmann, M.D.2
Snyder, A.3
Kvistborg, P.4
Makarov, V.5
Havel, J.J.6
Lee, W.7
Yuan, J.8
Wong, P.9
Ho, T.S.10
Miller, M.L.11
Rekhtman, N.12
Moreira, A.L.13
Ibrahim, F.14
Bruggeman, C.15
Gasmi, B.16
-
31
-
-
84918828514
-
Genetic basis for clinical response to CTLA-4 blockade in melanoma
-
Snyder A, Makarov V, Merghoub T, Yuan J, Zaretsky JM, Desrichard A, Walsh LA, Postow MA, Wong P, Ho TS, Hollmann TJ, Bruggeman C, Kannan K, Li Y, Elipenahli C, Liu C, et al. Genetic basis for clinical response to CTLA-4 blockade in melanoma. The New England journal of medicine. 2014; 371:2189-2199.
-
(2014)
The New England journal of medicine
, vol.371
, pp. 2189-2199
-
-
Snyder, A.1
Makarov, V.2
Merghoub, T.3
Yuan, J.4
Zaretsky, J.M.5
Desrichard, A.6
Walsh, L.A.7
Postow, M.A.8
Wong, P.9
Ho, T.S.10
Hollmann, T.J.11
Bruggeman, C.12
Kannan, K.13
Li, Y.14
Elipenahli, C.15
Liu, C.16
-
32
-
-
84961579782
-
The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression
-
Senbabaoglu Y, Winer A, Gejman R, Liu M, Luna A, Ostrovnaya I, Weinhold N, Lee W, Sander C and Hakimi A. The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression. bioRxiv doi:10.1101/025908 2015.
-
(2015)
bioRxiv
-
-
Senbabaoglu, Y.1
Winer, A.2
Gejman, R.3
Liu, M.4
Luna, A.5
Ostrovnaya, I.6
Weinhold, N.7
Lee, W.8
Sander, C.9
Hakimi, A.10
-
33
-
-
84881483492
-
Evolutionary dynamics of cancer in response to targeted combination therapy
-
Bozic I, Reiter JG, Allen B, Antal T, Chatterjee K, Shah P, Moon YS, Yaqubie A, Kelly N, Le DT, Lipson EJ, Chapman PB, Diaz LA, Jr., Vogelstein B and Nowak MA. Evolutionary dynamics of cancer in response to targeted combination therapy. eLife. 2013; 2:e00747.
-
(2013)
eLife
, vol.2
-
-
Bozic, I.1
Reiter, J.G.2
Allen, B.3
Antal, T.4
Chatterjee, K.5
Shah, P.6
Moon, Y.S.7
Yaqubie, A.8
Kelly, N.9
Le, D.T.10
Lipson, E.J.11
Chapman, P.B.12
Diaz, L.A.13
Vogelstein, B.14
Nowak, M.A.15
-
34
-
-
84938770152
-
Tracking the Genomic Evolution of Esophageal Adenocarcinoma through Neoadjuvant Chemotherapy
-
Murugaesu N, Wilson GA, Birkbak NJ, Watkins TB, McGranahan N, Kumar S, Abbassi-Ghadi N, Salm M, Mitter R, Horswell S, Rowan A, Phillimore B, Biggs J, Begum S, Matthews N, Hochhauser D, et al. Tracking the Genomic Evolution of Esophageal Adenocarcinoma through Neoadjuvant Chemotherapy. Cancer discovery. 2015; 5:821-831.
-
(2015)
Cancer discovery
, vol.5
, pp. 821-831
-
-
Murugaesu, N.1
Wilson, G.A.2
Birkbak, N.J.3
Watkins, T.B.4
McGranahan, N.5
Kumar, S.6
Abbassi-Ghadi, N.7
Salm, M.8
Mitter, R.9
Horswell, S.10
Rowan, A.11
Phillimore, B.12
Biggs, J.13
Begum, S.14
Matthews, N.15
Hochhauser, D.16
-
35
-
-
84907808265
-
Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing
-
Zhang J, Fujimoto J, Zhang J, Wedge DC, Song X, Zhang J, Seth S, Chow CW, Cao Y, Gumbs C, Gold KA, Kalhor N, Little L, Mahadeshwar H, Moran C, Protopopov A, et al. Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing. Science. 2014; 346:256-259.
-
(2014)
Science
, vol.346
, pp. 256-259
-
-
Zhang, J.1
Fujimoto, J.2
Zhang, J.3
Wedge, D.C.4
Song, X.5
Zhang, J.6
Seth, S.7
Chow, C.W.8
Cao, Y.9
Gumbs, C.10
Gold, K.A.11
Kalhor, N.12
Little, L.13
Mahadeshwar, H.14
Moran, C.15
Protopopov, A.16
-
36
-
-
84862776855
-
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
-
Matsushita H, Vesely MD, Koboldt DC, Rickert CG, Uppaluri R, Magrini VJ, Arthur CD, White JM, Chen YS, Shea LK, Hundal J, Wendl MC, Demeter R, Wylie T, Allison JP, Smyth MJ, et al. Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting. Nature. 2012; 482:400-404.
-
(2012)
Nature
, vol.482
, pp. 400-404
-
-
Matsushita, H.1
Vesely, M.D.2
Koboldt, D.C.3
Rickert, C.G.4
Uppaluri, R.5
Magrini, V.J.6
Arthur, C.D.7
White, J.M.8
Chen, Y.S.9
Shea, L.K.10
Hundal, J.11
Wendl, M.C.12
Demeter, R.13
Wylie, T.14
Allison, J.P.15
Smyth, M.J.16
-
37
-
-
84866754237
-
An immunosurveillance mechanism controls cancer cell ploidy
-
Senovilla L, Vitale I, Martins I, Tailler M, Pailleret C, Michaud M, Galluzzi L, Adjemian S, Kepp O, Niso-Santano M, Shen S, Marino G, Criollo A, Boileve A, Job B, Ladoire S, et al. An immunosurveillance mechanism controls cancer cell ploidy. Science. 2012; 337:1678-1684.
-
(2012)
Science
, vol.337
, pp. 1678-1684
-
-
Senovilla, L.1
Vitale, I.2
Martins, I.3
Tailler, M.4
Pailleret, C.5
Michaud, M.6
Galluzzi, L.7
Adjemian, S.8
Kepp, O.9
Niso-Santano, M.10
Shen, S.11
Marino, G.12
Criollo, A.13
Boileve, A.14
Job, B.15
Ladoire, S.16
-
38
-
-
84941201227
-
A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity
-
Waclaw B, Bozic I, Pittman ME, Hruban RH, Vogelstein B and Nowak MA. A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity. Nature. 2015.
-
(2015)
Nature
-
-
Waclaw, B.1
Bozic, I.2
Pittman, M.E.3
Hruban, R.H.4
Vogelstein, B.5
Nowak, M.A.6
-
39
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
Cibulskis K, Lawrence MS, Carter SL, Sivachenko A, Jaffe D, Sougnez C, Gabriel S, Meyerson M, Lander ES and Getz G. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nature biotechnology. 2013; 31:213-219.
-
(2013)
Nature biotechnology
, vol.31
, pp. 213-219
-
-
Cibulskis, K.1
Lawrence, M.S.2
Carter, S.L.3
Sivachenko, A.4
Jaffe, D.5
Sougnez, C.6
Gabriel, S.7
Meyerson, M.8
Lander, E.S.9
Getz, G.10
-
40
-
-
84923952286
-
A Big Bang model of human colorectal tumor growth
-
Sottoriva A, Kang H, Ma Z, Graham TA, Salomon MP, Zhao J, Marjoram P, Siegmund K, Press MF, Shibata D and Curtis C. A Big Bang model of human colorectal tumor growth. Nature genetics. 2015; 47:209-216.
-
(2015)
Nature genetics
, vol.47
, pp. 209-216
-
-
Sottoriva, A.1
Kang, H.2
Ma, Z.3
Graham, T.A.4
Salomon, M.P.5
Zhao, J.6
Marjoram, P.7
Siegmund, K.8
Press, M.F.9
Shibata, D.10
Curtis, C.11
-
41
-
-
78049398107
-
Distant metastasis occurs late during the genetic evolution of pancreatic cancer
-
Yachida S, Jones S, Bozic I, Antal T, Leary R, Fu B, Kamiyama M, Hruban RH, Eshleman JR, Nowak MA, Velculescu VE, Kinzler KW, Vogelstein B and Iacobuzio-Donahue CA. Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature. 2010; 467:1114-1117.
-
(2010)
Nature
, vol.467
, pp. 1114-1117
-
-
Yachida, S.1
Jones, S.2
Bozic, I.3
Antal, T.4
Leary, R.5
Fu, B.6
Kamiyama, M.7
Hruban, R.H.8
Eshleman, J.R.9
Nowak, M.A.10
Velculescu, V.E.11
Kinzler, K.W.12
Vogelstein, B.13
Iacobuzio-Donahue, C.A.14
-
42
-
-
84863230091
-
Single-cell exome sequencing reveals singlenucleotide mutation characteristics of a kidney tumor
-
Xu X, Hou Y, Yin X, Bao L, Tang A, Song L, Li F, Tsang S, Wu K, Wu H, He W, Zeng L, Xing M, Wu R, Jiang H, Liu X, et al. Single-cell exome sequencing reveals singlenucleotide mutation characteristics of a kidney tumor. Cell. 2012; 148:886-895.
-
(2012)
Cell
, vol.148
, pp. 886-895
-
-
Xu, X.1
Hou, Y.2
Yin, X.3
Bao, L.4
Tang, A.5
Song, L.6
Li, F.7
Tsang, S.8
Wu, K.9
Wu, H.10
He, W.11
Zeng, L.12
Xing, M.13
Wu, R.14
Jiang, H.15
Liu, X.16
|