-
1
-
-
84908450000
-
Vismodegib: A smoothened inhibitor for the treatment of advanced basal cell carcinoma
-
Aditya, S., & Rattan, A., (2013). Vismodegib: A smoothened inhibitor for the treatment of advanced basal cell carcinoma. Indian Dermatology Online Journal, 4, 365.10.4103/2229-5178.120685
-
(2013)
Indian Dermatology Online Journal
, vol.4
, pp. 365
-
-
Aditya, S.1
Rattan, A.2
-
2
-
-
25144480315
-
Cell lines as in vitro models for drug screening and toxicity studies
-
Allen, D. D., Caviedes, R., Cárdenas, A. M., Shimahara, T., Segura-Aguilar, J., & Caviedes, P. A., (2005). Cell lines as in vitro models for drug screening and toxicity studies. Drug Development and Industrial Pharmacy, 31, 757–768.10.1080/03639040500216246
-
(2005)
Drug Development and Industrial Pharmacy
, vol.31
, pp. 757-768
-
-
Allen, D.D.1
Caviedes, R.2
Cárdenas, A.M.3
Shimahara, T.4
Segura-Aguilar, J.5
Caviedes, P.A.6
-
3
-
-
33747200808
-
Combining docking and molecular dynamic simulations in drug design
-
Alonso, H., Bliznyuk, A. A., & Gready, J. E., (2006). Combining docking and molecular dynamic simulations in drug design. Medicinal Research Reviews, 26, 531–568.10.1002/(ISSN)1098-1128
-
(2006)
Medicinal Research Reviews
, vol.26
, pp. 531-568
-
-
Alonso, H.1
Bliznyuk, A.A.2
Gready, J.E.3
-
4
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G. D., & Hogue, C. W., (2003). An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics, 4, 1–27
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 1-27
-
-
Bader, G.D.1
Hogue, C.W.2
-
5
-
-
34547909602
-
Assortative mixing in protein contact networks and protein folding kinetics
-
Bagler, G., & Sinha, S., (2007). Assortative mixing in protein contact networks and protein folding kinetics. Bioinformatics, 23, 1760–1767.10.1093/bioinformatics/btm257
-
(2007)
Bioinformatics
, vol.23
, pp. 1760-1767
-
-
Bagler, G.1
Sinha, S.2
-
6
-
-
84899786103
-
Molecular modeling study on the dynamical structural features of human smoothened receptor and binding mechanism of antagonist LY2940680 by metadynamics simulation and free energy calculation
-
Bai, Q., Shen, Y., Jin, N., Liu, H., & Yao, X., (2014). Molecular modeling study on the dynamical structural features of human smoothened receptor and binding mechanism of antagonist LY2940680 by metadynamics simulation and free energy calculation. Biochimica et Biophysica Acta (BBA)–General Subjects, 1840, 2128–2138.10.1016/j.bbagen.2014.03.010
-
(2014)
Biochimica et Biophysica Acta (BBA)–General Subjects
, vol.1840
, pp. 2128-2138
-
-
Bai, Q.1
Shen, Y.2
Jin, N.3
Liu, H.4
Yao, X.5
-
7
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F., DiNola, A., & Haak, J. R., (1984). Molecular dynamics with coupling to an external bath. The Journal of Chemical Physics, 81, 3684–3690.10.1063/1.448118
-
(1984)
The Journal of Chemical Physics
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
8
-
-
0242268525
-
Widespread requirement for Hedgehog ligand stimulation in growth of digestive tract tumours
-
…
-
Berman, D. M., Karhadkar, S. S., Maitra, A., Montes de Oca, R., Gerstenblith, M. R., Briggs, K., … Watkins, D. N., (2003). Widespread requirement for Hedgehog ligand stimulation in growth of digestive tract tumours. Nature, 425, 846–851.10.1038/nature01972
-
(2003)
Nature
, vol.425
, pp. 846-851
-
-
Berman, D.M.1
Karhadkar, S.S.2
Maitra, A.3
Montes de Oca, R.4
Gerstenblith, M.R.5
Briggs, K.6
Watkins, D.N.7
-
9
-
-
0022419375
-
Aromatic-aromatic interaction: A mechanism of protein structure stabilization
-
Burley, S., & Petsko, G., (1985). Aromatic-aromatic interaction: A mechanism of protein structure stabilization. Science, 229, 23–28.10.1126/science.3892686
-
(1985)
Science
, vol.229
, pp. 23-28
-
-
Burley, S.1
Petsko, G.2
-
10
-
-
0036829397
-
Inhibition of Hedgehog signaling by direct binding of cyclopamine to smoothened
-
Chen, J. K., Taipale, J., Cooper, M. K., & Beachy, P. A., (2002). Inhibition of Hedgehog signaling by direct binding of cyclopamine to smoothened. Genes & Development, 16, 2743–2748.10.1101/gad.1025302
-
(2002)
Genes & Development
, vol.16
, pp. 2743-2748
-
-
Chen, J.K.1
Taipale, J.2
Cooper, M.K.3
Beachy, P.A.4
-
11
-
-
0037195074
-
Small molecule modulation of smoothened activity
-
Chen, J. K., Taipale, J., Young, K. E., Maiti, T., & Beachy, P. A., (2002). Small molecule modulation of smoothened activity. Proceedings of the National Academy of Sciences of the United States of America, 99, 14071–14076.10.1073/pnas.182542899
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 14071-14076
-
-
Chen, J.K.1
Taipale, J.2
Young, K.E.3
Maiti, T.4
Beachy, P.A.5
-
12
-
-
84929055234
-
Potential smoothened inhibitor from traditional Chinese medicine against the disease of diabetes, obesity, and cancer
-
Chen, K. C., Sun, M. F., Chen, H. Y., Lee, C. C., & Chen, C. Y., (2014). Potential smoothened inhibitor from traditional Chinese medicine against the disease of diabetes, obesity, and cancer. BioMed Research International, 2014, 873010
-
(2014)
BioMed Research International
, vol.2014
, pp. 873010
-
-
Chen, K.C.1
Sun, M.F.2
Chen, H.Y.3
Lee, C.C.4
Chen, C.Y.5
-
13
-
-
84880758861
-
Structural and logical analysis of a comprehensive hedgehog signaling pathway to identify alternative drug targets for glioma, colon and pancreatic cancer
-
Chowdhury, S., Pradhan, R. N., & Sarkar, R. R., (2013). Structural and logical analysis of a comprehensive hedgehog signaling pathway to identify alternative drug targets for glioma, colon and pancreatic cancer. PLoS One, 8, e69132.10.1371/journal.pone.0069132
-
(2013)
PLoS One
, vol.8
-
-
Chowdhury, S.1
Pradhan, R.N.2
Sarkar, R.R.3
-
14
-
-
0032486433
-
Teratogen-mediated inhibition of target tissue response to Shh signaling
-
Cooper, M. K., Porter, J. A., Young, K. E., & Beachy, P. A., (1998). Teratogen-mediated inhibition of target tissue response to Shh signaling. Science, 280, 1603–1607.10.1126/science.280.5369.1603
-
(1998)
Science
, vol.280
, pp. 1603-1607
-
-
Cooper, M.K.1
Porter, J.A.2
Young, K.E.3
Beachy, P.A.4
-
15
-
-
0035811492
-
Insights into Wnt binding and signalling from the structures of two Frizzled cysteine-rich domains
-
Dann, C. E., Hsieh, J.-C., Rattner, A., Sharma, D., Nathans, J., & Leahy, D. J., (2001). Insights into Wnt binding and signalling from the structures of two Frizzled cysteine-rich domains. Nature, 412, 86–90.10.1038/35083601
-
(2001)
Nature
, vol.412
, pp. 86-90
-
-
Dann, C.E.1
Hsieh, J.-C.2
Rattner, A.3
Sharma, D.4
Nathans, J.5
Leahy, D.J.6
-
17
-
-
84875170915
-
Protein contact networks: An emerging paradigm in chemistry
-
Di Paola, L., De Ruvo, M., Paci, P., Santoni, D., & Giuliani, A., (2013). Protein contact networks: An emerging paradigm in chemistry. Chemical Reviews, 113, 1598–1613.10.1021/cr3002356
-
(2013)
Chemical Reviews
, vol.113
, pp. 1598-1613
-
-
Di Paola, L.1
De Ruvo, M.2
Paci, P.3
Santoni, D.4
Giuliani, A.5
-
18
-
-
0037118056
-
Hedgehog regulates cell growth and proliferation by inducing Cyclin D and Cyclin E
-
Duman-Scheel, M., Weng, L., Xin, S., & Du, W., (2002). Hedgehog regulates cell growth and proliferation by inducing Cyclin D and Cyclin E. Nature, 417, 299–304.10.1038/417299a
-
(2002)
Nature
, vol.417
, pp. 299-304
-
-
Duman-Scheel, M.1
Weng, L.2
Xin, S.3
Du, W.4
-
19
-
-
84929193139
-
Pi-pi stacking mediated cooperative mechanism for human cytochrome P450 3A4
-
Fa, B., Cong, S., & Wang, J., (2015). Pi-pi stacking mediated cooperative mechanism for human cytochrome P450 3A4. Molecules, 20, 7558–7573.10.3390/molecules20057558
-
(2015)
Molecules
, vol.20
, pp. 7558-7573
-
-
Fa, B.1
Cong, S.2
Wang, J.3
-
20
-
-
85008904424
-
Computational protein-ligand docking and virtual drug screening with the AutoDock suite
-
Forli, S., Huey, R., Pique, M. E., Sanner, M. F., Goodsell, D. S., & Olson, A. J., (2016). Computational protein-ligand docking and virtual drug screening with the AutoDock suite. Nature Protocols, 11, 905–919.10.1038/nprot.2016.051
-
(2016)
Nature Protocols
, vol.11
, pp. 905-919
-
-
Forli, S.1
Huey, R.2
Pique, M.E.3
Sanner, M.F.4
Goodsell, D.S.5
Olson, A.J.6
-
21
-
-
18644368453
-
Small-molecule modulators of Hedgehog signaling: Identification and characterization of smoothened agonists and antagonists
-
…
-
Frank-Kamenetsky, M., Zhang, X. M., Bottega, S., Guicherit, O., Wichterle, H., Dudek, H., … Shulok, J., (2002). Small-molecule modulators of Hedgehog signaling: Identification and characterization of smoothened agonists and antagonists. Journal of Biology, 1, 10.10.1186/1475-4924-1-10
-
(2002)
Journal of Biology
, vol.1
, pp. 10
-
-
Frank-Kamenetsky, M.1
Zhang, X.M.2
Bottega, S.3
Guicherit, O.4
Wichterle, H.5
Dudek, H.6
Shulok, J.7
-
22
-
-
0038024615
-
The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints
-
Fredriksson, R., Lagerström, M. C., Lundin, L.-G., & Schiöth, H. B., (2003). The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. Molecular Pharmacology, 63, 1256–1272.10.1124/mol.63.6.1256
-
(2003)
Molecular Pharmacology
, vol.63
, pp. 1256-1272
-
-
Fredriksson, R.1
Lagerström, M.C.2
Lundin, L.-G.3
Schiöth, H.B.4
-
23
-
-
38849184046
-
Cell lines: A tool for in vitro drug metabolism studies
-
Gomez-Lechon, M. J., Donato, M. T., Lahoz, A., & Castell, J. V. (2007). Cell lines: A tool for in vitro drug metabolism studies. Current Drug Metabolism, 9, 1–11
-
(2007)
Current Drug Metabolism
, vol.9
, pp. 1-11
-
-
Gomez-Lechon, M.J.1
-
24
-
-
46249092554
-
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B., Kutzner, C., van der Spoel, D., & Lindahl, E., (2008). GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. Journal of Chemical Theory and Computation, 4, 435–447.10.1021/ct700301q
-
(2008)
Journal of Chemical Theory and Computation
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
van der Spoel, D.3
Lindahl, E.4
-
25
-
-
13844312649
-
ZINC—A free database of commercially available compounds for virtual screening
-
Irwin, J. J., & Shoichet, B. K., (2005). ZINC—A free database of commercially available compounds for virtual screening. Journal of Chemical Information and Modeling, 45, 177–182.10.1021/ci049714+
-
(2005)
Journal of Chemical Information and Modeling
, vol.45
, pp. 177-182
-
-
Irwin, J.J.1
Shoichet, B.K.2
-
26
-
-
33947139278
-
Setting up and running molecular dynamics simulations of membrane proteins
-
Kandt, C., Ash, W. L., & Peter Tieleman, D. P., (2007). Setting up and running molecular dynamics simulations of membrane proteins. Methods, 41, 475–488.10.1016/j.ymeth.2006.08.006
-
(2007)
Methods
, vol.41
, pp. 475-488
-
-
Kandt, C.1
Ash, W.L.2
Peter Tieleman, D.P.3
-
27
-
-
84960104601
-
Cellular and molecular biology of small cell lung cancer: An overview
-
Karachaliou, N., Pilotto, S., Lazzari, C., Bria, E., De Marinis, F., & Rosell, R., (2016). Cellular and molecular biology of small cell lung cancer: An overview. Translational Lung Cancer Research, 5, 2
-
(2016)
Translational Lung Cancer Research
, vol.5
, pp. 2
-
-
Karachaliou, N.1
Pilotto, S.2
Lazzari, C.3
Bria, E.4
De Marinis, F.5
Rosell, R.6
-
28
-
-
34247843997
-
Hedgehog signaling pathway and gastrointestinal stem cell signaling network (review)
-
Katoh, Y., & Katoh, M., (2006). Hedgehog signaling pathway and gastrointestinal stem cell signaling network (review). International Journal of Molecular Medicine, 18, 1019–1023
-
(2006)
International Journal of Molecular Medicine
, vol.18
, pp. 1019-1023
-
-
Katoh, Y.1
Katoh, M.2
-
29
-
-
21344446504
-
Monitoring protein-ligand interactions by time-resolved FTIR difference spectroscopy
-
305
-
Kötting, C., & Gerwert, K., (2005). Monitoring protein-ligand interactions by time-resolved FTIR difference spectroscopyProtein-Ligand Interactions: Methods and Applications, 305, 261–286.10.1385/1592599125
-
(2005)
Protein-Ligand Interactions: Methods and Applications
, pp. 261-286
-
-
Kötting, C.1
Gerwert, K.2
-
30
-
-
4344586961
-
Hedgehog signaling pathway is a new therapeutic target for patients with breast cancer
-
…
-
Kubo, M., Nakamura, M., Tasaki, A., Yamanaka, N., Nakashima, H., Nomura, M., … Katano, M., (2004). Hedgehog signaling pathway is a new therapeutic target for patients with breast cancer. Cancer Research, 64, 6071–6074.10.1158/0008-5472.CAN-04-0416
-
(2004)
Cancer Research
, vol.64
, pp. 6071-6074
-
-
Kubo, M.1
Nakamura, M.2
Tasaki, A.3
Yamanaka, N.4
Nakashima, H.5
Nomura, M.6
Katano, M.7
-
31
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M., (1993). PROCHECK: A program to check the stereochemical quality of protein structures. Journal of Applied Crystallography, 26, 283–291.10.1107/S0021889892009944
-
(1993)
Journal of Applied Crystallography
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
32
-
-
85025450393
-
Pharmacological evaluation of a series of smoothened antagonists in signaling pathways and after topical application in a depilated mouse model
-
…
-
Lauressergues, E., Heusler, P., Lestienne, F., Troulier, D., Rauly-Lestienne, I., Tourette, A., … Denais-Laliève, D., (2016). Pharmacological evaluation of a series of smoothened antagonists in signaling pathways and after topical application in a depilated mouse model. Pharmacology Research & Perspectives, 4, e00214.10.1002/prp2.214
-
(2016)
Pharmacology Research & Perspectives
, vol.4
, pp. e00214
-
-
Lauressergues, E.1
Heusler, P.2
Lestienne, F.3
Troulier, D.4
Rauly-Lestienne, I.5
Tourette, A.6
Denais-Laliève, D.7
-
33
-
-
84866315691
-
crystal structure of the catalytic domain of the Bacillus cereus sleb protein, important in cortex peptidoglycan degradation during Spore germination
-
Li, Y., Jin, K., Setlow, B., Setlow, P., & Hao, B., (2012). crystal structure of the catalytic domain of the Bacillus cereus sleb protein, important in cortex peptidoglycan degradation during Spore germination. Journal of Bacteriology, 194, 4537–4545.10.1128/JB.00877-12
-
(2012)
Journal of Bacteriology
, vol.194
, pp. 4537-4545
-
-
Li, Y.1
Jin, K.2
Setlow, B.3
Setlow, P.4
Hao, B.5
-
34
-
-
84861352086
-
Hedgehog pathway as a drug target: smoothened inhibitors in development
-
Lin, T. L., & Matsui, W., (2012). Hedgehog pathway as a drug target: smoothened inhibitors in development. Onco targets and therapy, 5, 47–58.10.2147/OTT
-
(2012)
Onco targets and therapy
, vol.5
, pp. 47-58
-
-
Lin, T.L.1
Matsui, W.2
-
35
-
-
0032546782
-
π-Stacking interactions: Alive and well in proteins
-
McGaughey, G. B., Gagné, M., & Rappé, A. K., (1998). π-Stacking interactions: Alive and well in proteins. Journal of Biological Chemistry, 273, 15458–15463.10.1074/jbc.273.25.15458
-
(1998)
Journal of Biological Chemistry
, vol.273
, pp. 15458-15463
-
-
McGaughey, G.B.1
Gagné, M.2
Rappé, A.K.3
-
36
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K., & Olson, A. J., (1998). Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. Journal of Computational Chemistry, 19, 1639–1662.10.1002/(ISSN)1096-987X
-
(1998)
Journal of Computational Chemistry
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
37
-
-
81255171373
-
A crucial requirement for Hedgehog signaling in small cell lung cancer
-
…
-
Park, K.-S., Martelotto, L. G., Peifer, M., Sos, M. L., Karnezis, A. N., Mahjoub, M. R., … Yuan, J., (2011). A crucial requirement for Hedgehog signaling in small cell lung cancer. Nature Medicine, 17, 1504–1508.10.1038/nm.2473
-
(2011)
Nature Medicine
, vol.17
, pp. 1504-1508
-
-
Park, K.-S.1
Martelotto, L.G.2
Peifer, M.3
Sos, M.L.4
Karnezis, A.N.5
Mahjoub, M.R.6
Yuan, J.7
-
38
-
-
26144434487
-
Crystal structure and pair potentials: A molecular-dynamics study
-
Parrinello, M., & Rahman, A., (1980). Crystal structure and pair potentials: A molecular-dynamics study. Physical Review Letters, 45, 1196–1199.10.1103/PhysRevLett.45.1196
-
(1980)
Physical Review Letters
, vol.45
, pp. 1196-1199
-
-
Parrinello, M.1
Rahman, A.2
-
39
-
-
77957858045
-
Optimized hydrophobic interactions and hydrogen bonding at the target-ligand interface leads the pathways of drug-designing
-
Patil, R., Das, S., Stanley, A., Yadav, L., Sudhakar, A., & Varma, A. K., (2010). Optimized hydrophobic interactions and hydrogen bonding at the target-ligand interface leads the pathways of drug-designing. PLoS One, 5, e12029.10.1371/journal.pone.0012029
-
(2010)
PLoS One
, vol.5
-
-
Patil, R.1
Das, S.2
Stanley, A.3
Yadav, L.4
Sudhakar, A.5
Varma, A.K.6
-
40
-
-
84921351430
-
Smoothened (SMO) receptor mutations dictate resistance to vismodegib in basal cell carcinoma
-
…
-
Pricl, S., Cortelazzi, B., Dal Col, V., Marson, D., Laurini, E., Fermeglia, M., … Perrone, F., (2015). Smoothened (SMO) receptor mutations dictate resistance to vismodegib in basal cell carcinoma. Molecular Oncology, 9, 389–397.10.1016/j.molonc.2014.09.003
-
(2015)
Molecular Oncology
, vol.9
, pp. 389-397
-
-
Pricl, S.1
Cortelazzi, B.2
Dal Col, V.3
Marson, D.4
Laurini, E.5
Fermeglia, M.6
Perrone, F.7
-
41
-
-
81555228396
-
Investigational Notch and Hedgehog inhibitors–therapies for cardiovascular disease
-
Redmond, E. M., Guha, S., Walls, D., & Cahill, P. A., (2011). Investigational Notch and Hedgehog inhibitors–therapies for cardiovascular disease. Expert Opin Investig Drugs, 20, 1649–1664.10.1517/13543784.2011.628658
-
(2011)
Expert Opin Investig Drugs
, vol.20
, pp. 1649-1664
-
-
Redmond, E.M.1
Guha, S.2
Walls, D.3
Cahill, P.A.4
-
42
-
-
84899654206
-
Targeting of smoothened for therapeutic gain
-
Ruat, M., Hoch, L., Faure, H., & Rognan, D., (2014). Targeting of smoothened for therapeutic gain. Trends in Pharmacological Sciences, 35, 237–246.10.1016/j.tips.2014.03.002
-
(2014)
Trends in Pharmacological Sciences
, vol.35
, pp. 237-246
-
-
Ruat, M.1
Hoch, L.2
Faure, H.3
Rognan, D.4
-
43
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Šali, A., & Blundell, T. L., (1993). Comparative protein modelling by satisfaction of spatial restraints. Journal of Molecular Biology, 234, 779–815
-
(1993)
Journal of Molecular Biology
, vol.234
, pp. 779-815
-
-
Šali, A.1
Blundell, T.L.2
-
44
-
-
7544226311
-
PRODRG: A tool for high-throughput crystallography of protein–ligand complexes
-
Schüttelkopf, A. W., & van Aalten, D. M., (2004). PRODRG: A tool for high-throughput crystallography of protein–ligand complexes. Acta Crystallographica Section D: Biological Crystallography, 60, 1355–1363.10.1107/S0907444904011679
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, pp. 1355-1363
-
-
Schüttelkopf, A.W.1
van Aalten, D.M.2
-
45
-
-
85055065812
-
Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization
-
Sengupta, D., & Kundu, S., (2012). Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization. BMC Bioinformatics, 13, 1–12
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 1-12
-
-
Sengupta, D.1
Kundu, S.2
-
46
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
…
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., … Ideker, T., (2003). Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research, 13, 2498–2504.10.1101/gr.1239303
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Ideker, T.7
-
47
-
-
84925543748
-
Molecular docking and molecular dynamics study on SmHDAC1 to identify potential lead compounds against Schistosomiasis
-
Singh, R., & Pandey, P. N., (2015). Molecular docking and molecular dynamics study on SmHDAC1 to identify potential lead compounds against Schistosomiasis. Molecular Biology Reports, 42, 689–698.10.1007/s11033-014-3816-z
-
(2015)
Molecular Biology Reports
, vol.42
, pp. 689-698
-
-
Singh, R.1
Pandey, P.N.2
-
48
-
-
84924944014
-
Understanding the binding of inhibitors of matrix metalloproteinases by molecular docking, quantum mechanical calculations, molecular dynamics simulations, and a MMGBSA/MMBappl study
-
Singh, T., Adekoya, O. A., & Jayaram, B., (2015). Understanding the binding of inhibitors of matrix metalloproteinases by molecular docking, quantum mechanical calculations, molecular dynamics simulations, and a MMGBSA/MMBappl study. Molecular BioSystems, 11, 1041–1051.10.1039/C5MB00003C
-
(2015)
Molecular BioSystems
, vol.11
, pp. 1041-1051
-
-
Singh, T.1
Adekoya, O.A.2
Jayaram, B.3
-
49
-
-
84880286488
-
Extra precision docking, free energy calculation and molecular dynamics simulation studies of CDK2 inhibitors
-
Tripathi, S. K., Muttineni, R., & Singh, S. K., (2013). Extra precision docking, free energy calculation and molecular dynamics simulation studies of CDK2 inhibitors. Journal of Theoretical Biology, 334, 87–100.10.1016/j.jtbi.2013.05.014
-
(2013)
Journal of Theoretical Biology
, vol.334
, pp. 87-100
-
-
Tripathi, S.K.1
Muttineni, R.2
Singh, S.K.3
-
50
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O., & Olson, A. J., (2010). AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. Journal of Computational Chemistry, 31, 455–461
-
(2010)
Journal of Computational Chemistry
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
51
-
-
78649883885
-
Interaction energy based protein structure networks
-
Vijayabaskar, M. S., & Vishveshwara, S., (2010). Interaction energy based protein structure networks. Biophysical Journal, 99, 3704–3715.10.1016/j.bpj.2010.08.079
-
(2010)
Biophysical Journal
, vol.99
, pp. 3704-3715
-
-
Vijayabaskar, M.S.1
Vishveshwara, S.2
-
52
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace, A. C., Laskowski, R. A., & Thornton, J. M., (1995). LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Engineering, Design and Selection, 8, 127–134.10.1093/protein/8.2.127
-
(1995)
Protein Engineering, Design and Selection
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
53
-
-
84894037590
-
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography
-
…
-
Weierstall, U., James, D., Wang, C., White, T. A., Wang, D., Liu, W., … Fromme, P., (2014). Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nature Communications, 5, 3309
-
(2014)
Nature Communications
, vol.5
, pp. 3309
-
-
Weierstall, U.1
James, D.2
Wang, C.3
White, T.A.4
Wang, D.5
Liu, W.6
Fromme, P.7
-
54
-
-
67651148155
-
Cyclopamine-induced synophthalmia in sheep: Defining a critical window and toxicokinetic evaluation
-
Welch, K. D., Panter, K. E., Lee, S. T., Gardner, D. R., Stegelmeier, B. L., & Cook, D., (2009). Cyclopamine-induced synophthalmia in sheep: Defining a critical window and toxicokinetic evaluation. Journal of Applied Toxicology, 29, 414–421.10.1002/jat.v29:5
-
(2009)
Journal of Applied Toxicology
, vol.29
, pp. 414-421
-
-
Welch, K.D.1
Panter, K.E.2
Lee, S.T.3
Gardner, D.R.4
Stegelmeier, B.L.5
Cook, D.6
-
55
-
-
0024955250
-
Application of fourier transform infrared (FTIR) spectroscopy to the study of protein-ligand interactionsa
-
Wingard, L. B., & Narasimhan, K., (1988). Application of fourier transform infrared (FTIR) spectroscopy to the study of protein-ligand interactionsa. Annals of the New York Academy of Sciences, 542, 480–484.10.1111/nyas.1988.542.issue-1
-
(1988)
Annals of the New York Academy of Sciences
, vol.542
, pp. 480-484
-
-
Wingard, L.B.1
Narasimhan, K.2
-
56
-
-
0031913524
-
Activating smoothened mutations in sporadic basal-cell carcinoma
-
…
-
Xie, J., Murone, M., Luoh, S.-M., Ryan, A., Gu, Q., Zhang, C., … Goddard, A., (1998). Activating smoothened mutations in sporadic basal-cell carcinoma. Nature, 391, 90–92
-
(1998)
Nature
, vol.391
, pp. 90-92
-
-
Xie, J.1
Murone, M.2
Luoh, S.-M.3
Ryan, A.4
Gu, Q.5
Zhang, C.6
Goddard, A.7
-
57
-
-
84860899307
-
Activation of the Sonic Hedgehog pathway in thyroid neoplasms and its potential role in tumor cell proliferation
-
…
-
Xu, X., Ding, H., Rao, G., Arora, S., Saclarides, C. P., Esparaz, J., … Prinz, R. A., (2012). Activation of the Sonic Hedgehog pathway in thyroid neoplasms and its potential role in tumor cell proliferation. Endocrine-Related Cancer, 19, 167–179.10.1530/ERC-11-0305
-
(2012)
Endocrine-Related Cancer
, vol.19
, pp. 167-179
-
-
Xu, X.1
Ding, H.2
Rao, G.3
Arora, S.4
Saclarides, C.P.5
Esparaz, J.6
Prinz, R.A.7
-
58
-
-
70350496540
-
Smoothened mutation confers resistance to a hedgehog pathway inhibitor in medulloblastoma
-
…
-
Yauch, R. L., Dijkgraaf, G. J., Alicke, B., Januario, T., Ahn, C. P., Holcomb, T., … Tang, T., (2009). Smoothened mutation confers resistance to a hedgehog pathway inhibitor in medulloblastoma. Science, 326, 572–574.10.1126/science.1179386
-
(2009)
Science
, vol.326
, pp. 572-574
-
-
Yauch, R.L.1
Dijkgraaf, G.J.2
Alicke, B.3
Januario, T.4
Ahn, C.P.5
Holcomb, T.6
Tang, T.7
-
59
-
-
64749091867
-
Hedgehog signalling is essential for maintenance of cancer stem cells in myeloid leukaemia
-
…
-
Zhao, C., Chen, A., Jamieson, C. H., Fereshteh, M., Abrahamsson, A., Blum, J., … Rizzieri, D., (2009). Hedgehog signalling is essential for maintenance of cancer stem cells in myeloid leukaemia. Nature, 458, 776–779.10.1038/nature07737
-
(2009)
Nature
, vol.458
, pp. 776-779
-
-
Zhao, C.1
Chen, A.2
Jamieson, C.H.3
Fereshteh, M.4
Abrahamsson, A.5
Blum, J.6
Rizzieri, D.7
-
60
-
-
79958841703
-
SwissParam: A fast force field generation tool for small organic molecules
-
Zoete, V., Cuendet, M. A., Grosdidier, A., & Michielin, O., (2011). SwissParam: A fast force field generation tool for small organic molecules. Journal of Computational Chemistry, 32, 2359–2368.10.1002/jcc.v32.11
-
(2011)
Journal of Computational Chemistry
, vol.32
, pp. 2359-2368
-
-
Zoete, V.1
Cuendet, M.A.2
Grosdidier, A.3
Michielin, O.4
|