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Volumn 42, Issue 3, 2015, Pages 689-698

Molecular docking and molecular dynamics study on SmHDAC1 to identify potential lead compounds against Schistosomiasis

Author keywords

Homology modeling; Molecular docking; Schistosomiasis; SmHDAC1; Virtual screening

Indexed keywords

HISTONE DEACETYLASE 1; HISTONE DEACETYLASE INHIBITOR; N,8 DIHYDROXY 8 (NAPHTHALEN 2 YL)OCTANAMIDE; UNCLASSIFIED DRUG; ANTISCHISTOSOMAL AGENT; HELMINTH PROTEIN; PROTEIN BINDING;

EID: 84925543748     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3816-z     Document Type: Article
Times cited : (18)

References (34)
  • 1
    • 80054953179 scopus 로고    scopus 로고
    • Schistosomiasis
    • PID: 22034712
    • Brown M (2011) Schistosomiasis. Clin Med 11:479–482
    • (2011) Clin Med , vol.11 , pp. 479-482
    • Brown, M.1
  • 3
    • 84859001797 scopus 로고    scopus 로고
    • Diagnosis and management of schistosomiasis
    • PID: 21586478
    • Gray DJ, Ross AG, Li Y-S, McManus DP (2011) Diagnosis and management of schistosomiasis. BMJ 342:d2651
    • (2011) BMJ , vol.342 , pp. 2651
    • Gray, D.J.1    Ross, A.G.2    Li, Y.-S.3    McManus, D.P.4
  • 4
    • 77956418613 scopus 로고    scopus 로고
    • Praziquantel and Schistosomiasis
    • PID: 20677314
    • Domling A, Khoury K (2010) Praziquantel and Schistosomiasis. Chem Med Chem 5:1420–1434
    • (2010) Chem Med Chem , vol.5 , pp. 1420-1434
    • Domling, A.1    Khoury, K.2
  • 5
    • 0036758608 scopus 로고    scopus 로고
    • Resistance of Schistosoma mansoni to praziquantel: is there a problem?
    • COI: 1:CAS:528:DC%2BD38Xpslektbg%3D, PID: 12474468
    • Doenhoff MJ, Kusel JR, Coles GC, Cioli D (2002) Resistance of Schistosoma mansoni to praziquantel: is there a problem? Trans R Soc Trop Med Hyg 96:465–469
    • (2002) Trans R Soc Trop Med Hyg , vol.96 , pp. 465-469
    • Doenhoff, M.J.1    Kusel, J.R.2    Coles, G.C.3    Cioli, D.4
  • 6
    • 77957937450 scopus 로고    scopus 로고
    • Epigenetic modifications as therapeutic targets
    • COI: 1:CAS:528:DC%2BC3cXht1yjs7bJ
    • Kelly TK, De Carvalho DD, Jones PA (2010) Epigenetic modifications as therapeutic targets. Nat Biotech 28:1069–1078
    • (2010) Nat Biotech , vol.28 , pp. 1069-1078
    • Kelly, T.K.1    De Carvalho, D.D.2    Jones, P.A.3
  • 7
    • 84865402404 scopus 로고    scopus 로고
    • Targeting the epigenome for treatment of cancer
    • PID: 22139071
    • Geutjes EJ, Bajpe PK, Bernards R (2011) Targeting the epigenome for treatment of cancer. Oncogene 31:3827–3844
    • (2011) Oncogene , vol.31 , pp. 3827-3844
    • Geutjes, E.J.1    Bajpe, P.K.2    Bernards, R.3
  • 8
    • 84867542415 scopus 로고    scopus 로고
    • Targeting schistosome histone modifying enzymes for drug development
    • COI: 1:CAS:528:DC%2BC38Xht1Klt7%2FM, PID: 22607147
    • Pierce RJ, Dubois-Abdesselem F, Lancelot J, Andrade L, Oliveira G (2012) Targeting schistosome histone modifying enzymes for drug development. Curr Pharm Des 18:3567–3578
    • (2012) Curr Pharm Des , vol.18 , pp. 3567-3578
    • Pierce, R.J.1    Dubois-Abdesselem, F.2    Lancelot, J.3    Andrade, L.4    Oliveira, G.5
  • 9
    • 33750531864 scopus 로고    scopus 로고
    • Innovative lead discovery strategies for tropical diseases
    • COI: 1:CAS:528:DC%2BD28XhtFGjsrzE, PID: 17080030
    • Nwaka S, Hudson A (2006) Innovative lead discovery strategies for tropical diseases. Nat Rev Drug Discov 5:941–955
    • (2006) Nat Rev Drug Discov , vol.5 , pp. 941-955
    • Nwaka, S.1    Hudson, A.2
  • 10
    • 82955247831 scopus 로고    scopus 로고
    • Structure, mechanism, and inhibition of histone deacetylases and related metalloenzymes
    • COI: 1:CAS:528:DC%2BC3MXhsFOhurrJ, PID: 21872466
    • Lombardi PM, Cole KE, Dowling DP, Christianson DW (2011) Structure, mechanism, and inhibition of histone deacetylases and related metalloenzymes. Curr Opin Struct Biol 21:735–743
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 735-743
    • Lombardi, P.M.1    Cole, K.E.2    Dowling, D.P.3    Christianson, D.W.4
  • 11
    • 84855443033 scopus 로고    scopus 로고
    • HDAC inhibitors in parasitic diseases
    • COI: 1:CAS:528:DC%2BC38XkslyltA%3D%3D, PID: 22124373
    • Andrews KT, Haque A, Jones MK (2012) HDAC inhibitors in parasitic diseases. Immunol Cell Biol 90:66–77
    • (2012) Immunol Cell Biol , vol.90 , pp. 66-77
    • Andrews, K.T.1    Haque, A.2    Jones, M.K.3
  • 12
    • 43049091210 scopus 로고    scopus 로고
    • Structural insights into the Plasmodium falciparumhistone deacetylase 1 (PfHDAC-1): a novel target for the development of antimalarial therapy
    • COI: 1:CAS:528:DC%2BD1cXlvVSqurs%3D, PID: 18362073
    • Mukherjee P, Pradhan A, Shah F, Tekwani BL, Avery MA (2008) Structural insights into the Plasmodium falciparumhistone deacetylase 1 (PfHDAC-1): a novel target for the development of antimalarial therapy. Bioorg Med Chem 16:5254–5265
    • (2008) Bioorg Med Chem , vol.16 , pp. 5254-5265
    • Mukherjee, P.1    Pradhan, A.2    Shah, F.3    Tekwani, B.L.4    Avery, M.A.5
  • 13
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Hompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Hompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 14
    • 0027136282 scopus 로고
    • Comparative protein modeling by satisfaction of spatial restraints
    • COI: 1:CAS:528:DyaK2cXnt1ylug%3D%3D, PID: 8254673
    • Sali A, Blundell TL (1993) Comparative protein modeling by satisfaction of spatial restraints. J Mol Biol 234:779–815
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 16
    • 0035964342 scopus 로고    scopus 로고
    • Electrostatics of nanosystems: application to microtubules and the ribosome
    • COI: 1:CAS:528:DC%2BD3MXmvFWisbc%3D, PID: 11517324
    • Baker N, Sept D, Joseph S, Holst M, McCammon J (2001) Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci U S A 98(18):10037
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.18 , pp. 10037
    • Baker, N.1    Sept, D.2    Joseph, S.3    Holst, M.4    McCammon, J.5
  • 18
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: interactive web service for the recognition of errors in three dimensional structures of proteins
    • Wiederstein M, Sippl MJ (2007) ProSA-web: interactive web service for the recognition of errors in three dimensional structures of proteins. Nucleic Acid Res 3:407–410
    • (2007) Nucleic Acid Res , vol.3 , pp. 407-410
    • Wiederstein, M.1    Sippl, M.J.2
  • 19
    • 0027542118 scopus 로고
    • Quality control of protein models: directional atomic contact analysis. J Appl Crystallogr 26:47–60
    • Vriend G, Sander C (1993) Quality control of protein models: directional atomic contact analysis. J Appl Crystallogr 26:47–60. WHAT IF Web Interface. http://swift.cmbi.kun.nl/WIWWWI/
    • (1993) WHAT IF Web Interface
    • Vriend, G.1    Sander, C.2
  • 20
    • 0029092698 scopus 로고
    • Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
    • PID: 7563068
    • Hünenberger PH, Mark AE, van Gunsteren WF (1995) Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J Mol Biol 252:492–503
    • (1995) J Mol Biol , vol.252 , pp. 492-503
    • Hünenberger, P.H.1    Mark, A.E.2    van Gunsteren, W.F.3
  • 21
    • 0001398008 scopus 로고    scopus 로고
    • How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
    • COI: 1:CAS:528:DC%2BD3cXlsVylt78%3D
    • Wang J, Cieplak P, Kollman PA (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J Comput Chem 21:1049–1074
    • (2000) J Comput Chem , vol.21 , pp. 1049-1074
    • Wang, J.1    Cieplak, P.2    Kollman, P.A.3
  • 22
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • COI: 1:CAS:528:DyaL3sXksF2htL4%3D
    • Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926–935
    • (1983) J Chem Phys , vol.79 , pp. 926-935
    • Jorgensen, W.L.1    Chandrasekhar, J.2    Madura, J.D.3    Impey, R.W.4    Klein, M.L.5
  • 24
    • 0000388705 scopus 로고    scopus 로고
    • LINCS: a linear constraint solver for molecular simulations
    • COI: 1:CAS:528:DyaK2sXlvV2nu7g%3D
    • Hess B, Bekker H, Berendsen HJC, Fraaije JGEM (1997) LINCS: a linear constraint solver for molecular simulations. J Comput Chem 18:1463–1472
    • (1997) J Comput Chem , vol.18 , pp. 1463-1472
    • Hess, B.1    Bekker, H.2    Berendsen, H.J.C.3    Fraaije, J.G.E.M.4
  • 25
    • 84861873553 scopus 로고    scopus 로고
    • An efficient anticancer histone deacetylase inhibitor and its analogues for human HDAC8
    • COI: 1:CAS:528:DC%2BC3MXhtFKqtL0%3D
    • Noureen N, Rashid H, Kalsoom S (2012) An efficient anticancer histone deacetylase inhibitor and its analogues for human HDAC8. Med Chem Res 21:568–577
    • (2012) Med Chem Res , vol.21 , pp. 568-577
    • Noureen, N.1    Rashid, H.2    Kalsoom, S.3
  • 26
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading
    • COI: 1:CAS:528:DC%2BD1MXhsFGnur3O, PID: 19499576
    • Trott O, Olson AJ (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. J Comput Chem 31:455–461
    • (2010) J Comput Chem , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 27
    • 0033397980 scopus 로고    scopus 로고
    • Python: a programming language for software integration and development
    • COI: 1:CAS:528:DC%2BD3cXhtV2rsA%3D%3D, PID: 10660911
    • Sanner M (1999) Python: a programming language for software integration and development. J Mol Graph Model 17:57–61
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.1
  • 29
    • 0028922586 scopus 로고
    • LIGPLOT: a program to generate schematic diagrams of protein–ligand interactions
    • COI: 1:CAS:528:DyaK2MXltVCgtLc%3D, PID: 7630882
    • Wallace AC, Laskowski RA, Thornton JM (1995) LIGPLOT: a program to generate schematic diagrams of protein–ligand interactions. Protein Eng 8:127–134
    • (1995) Protein Eng , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 31
    • 0030931336 scopus 로고
    • 75 % accuracy in protein secondary structure prediction
    • Frishman D, Argos P (1995) 75 % accuracy in protein secondary structure prediction. Proteins 27:329–335
    • (1995) Proteins , vol.27 , pp. 329-335
    • Frishman, D.1    Argos, P.2
  • 32
    • 0032784276 scopus 로고    scopus 로고
    • α/β Hydrolase fold enzymes: the family keeps growing
    • COI: 1:CAS:528:DC%2BD3cXis1yksw%3D%3D
    • Nardini M, Dijkstra BW (1999) α/β Hydrolase fold enzymes: the family keeps growing. Curr Opin Struct Bio 9:732–737
    • (1999) Curr Opin Struct Bio , vol.9 , pp. 732-737
    • Nardini, M.1    Dijkstra, B.W.2
  • 33
    • 18644365597 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors differentially stabilize acetylated p53 and induce cell cycle arrest or apoptosis in prostate cancer cells
    • COI: 1:CAS:528:DC%2BD2MXkvVSrtL8%3D, PID: 15746940
    • Roy S, Packman K, Jeffrey R, Tenniswood M (2005) Histone deacetylase inhibitors differentially stabilize acetylated p53 and induce cell cycle arrest or apoptosis in prostate cancer cells. Cell Death Differ 12:482–491
    • (2005) Cell Death Differ , vol.12 , pp. 482-491
    • Roy, S.1    Packman, K.2    Jeffrey, R.3    Tenniswood, M.4
  • 34
    • 84864199587 scopus 로고    scopus 로고
    • Mysinger, Bolstad and Coleman
    • COI: 1:CAS:528:DC%2BC38XmvFGnsrg%3D, PID: 22587354
    • Irwin Sterling (2012) Mysinger, Bolstad and Coleman. J Chem Inf Model 52(7):1757–1768
    • (2012) J Chem Inf Model , vol.52 , Issue.7 , pp. 1757-1768
    • Irwin, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.