-
1
-
-
76449098262
-
PHENIX: A comprehensive python-based system for macromolecular structure solution
-
PMID: 20124702
-
Adams PD, Afonine PV, Bunkó czi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. 2010. PHENIX: a comprehensive python-based system for macromolecular structure solution. Acta Crystallographica Section D Biological Crystallography 66:213-221. DOI: 10.1107/S0907444909052925, PMID: 20124702
-
(2010)
Acta Crystallographica Section D Biological Crystallography
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkó Czi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
PMID: 1050 8172
-
Allmang C, Kufel J, Chanfreau G, Mitchell P, Petfalski E, Tollervey D. 1999. Functions of the exosome in rRNA, snoRNA and snRNA synthesis. The EMBO Journal 18:5399-5410. DOI: 10.1093/emboj/18.19.5399, PMID: 1050 8172
-
(1999)
The EMBO Journal
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
Tollervey, D.6
-
3
-
-
0034655640
-
Degradation of ribosomal RNA precursors by the exosome
-
PMID: 10734186
-
Allmang C, Mitchell P, Petfalski E, Tollervey D. 2000. Degradation of ribosomal RNA precursors by the exosome. Nucleic Acids Research 28:1684-1691. DOI: 10.1093/nar/28.8.1684, PMID: 10734186
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 1684-1691
-
-
Allmang, C.1
Mitchell, P.2
Petfalski, E.3
Tollervey, D.4
-
4
-
-
77954257799
-
ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
PMID: 20478830
-
Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N. 2010. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Research 38:W529-W533. DOI: 10.1093/nar/gkq399, PMID: 20478830
-
(2010)
Nucleic Acids Research
, vol.38
, pp. W529-W533
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
5
-
-
55549097135
-
Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants
-
PMID: 1 8824516
-
Assenholt J, Mouaikel J, Andersen KR, Brodersen DE, Libri D, Jensen TH. 2008. Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants. RNA 14:2305-2313. DOI: 10.1261/rna.1108008, PMID: 1 8824516
-
(2008)
RNA
, vol.14
, pp. 2305-2313
-
-
Assenholt, J.1
Mouaikel, J.2
Ersen, K.R.3
Brodersen, D.E.4
Libri, D.5
Jensen, T.H.6
-
6
-
-
79551681406
-
The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates
-
PMID: 21255825
-
Basu U, Meng FL, Keim C, Grinstein V, Pefanis E, Eccleston J, Zhang T, Myers D, Wasserman CR, Wesemann DR, Januszyk K, Gregory RI, Deng H, Lima CD, Alt FW. 2011. The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates. Cell 144:353-363. DOI: 10.1016/j.cell.2011. 01.001, PMID: 21255825
-
(2011)
Cell
, vol.144
, pp. 353-363
-
-
Basu, U.1
Meng, F.L.2
Keim, C.3
Grinstein, V.4
Pefanis, E.5
Eccleston, J.6
Zhang, T.7
Myers, D.8
Wasserman, C.R.9
Wesemann, D.R.10
Januszyk, K.11
Gregory, R.I.12
Deng, H.13
Lima, C.D.14
Alt, F.W.15
-
7
-
-
70350336247
-
The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
PMID: 1 9879841
-
Bonneau F, Basquin J, Ebert J, Lorentzen E, Conti E. 2009. The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell 139:547-559. DOI: 10.1016/j.cell.2009.08.042, PMID: 1 9879841
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
8
-
-
37049014272
-
Version 1.2 of the Crystallography and NMR system
-
PMID: 18007608
-
Brunger AT. 2007. Version 1.2 of the Crystallography and NMR system. Nature Protocols 2:2728-2733. DOI: 10. 1038/nprot.2007.406, PMID: 18007608
-
(2007)
Nature Protocols
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
9
-
-
79960681216
-
Rrp6, rrp47 and cofactors of the nuclear exosome
-
PMID: 21713680
-
Butler JS, Mitchell P. 2011. Rrp6, rrp47 and cofactors of the nuclear exosome. Advances in Experimental Medicine and Biology 702:91-104. DOI: 10.1007/978-1-4419-7841-7_8, PMID: 21713680
-
(2011)
Advances in Experimental Medicine and Biology
, vol.702
, pp. 91-104
-
-
Butler, J.S.1
Mitchell, P.2
-
10
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
PMID: 11719186
-
Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M. 2001. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107:451-464. DOI: 10.1016/S0092-8674(01)00578-5, PMID: 11719186
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
Pruijn, G.J.6
Stoecklin, G.7
Moroni, C.8
Mann, M.9
Karin, M.10
-
11
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
PMID: 20057044
-
Chen VB, Arendall WB, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC. 2010. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallographica Section D Biological Crystallography 66:12-21. DOI: 10.1107/S0907444909042073, PMID: 20057044
-
(2010)
Acta Crystallographica Section D Biological Crystallography
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
12
-
-
48449106792
-
The jpred 3 secondary structure prediction server
-
PMID: 18463136
-
Cole C, Barber JD, Barton GJ. 2008. The jpred 3 secondary structure prediction server. Nucleic Acids Research 36:W197-W201. DOI: 10.1093/nar/gkn238, PMID: 18463136
-
(2008)
Nucleic Acids Research
, vol.36
, pp. W197-W201
-
-
Cole, C.1
Barber, J.D.2
Barton, G.J.3
-
13
-
-
84904721374
-
Structural analysis of the yeast exosome Rrp6p-Rrp47p complex by small-angle X-ray scattering
-
PMID: 24937447
-
Dedic E, Seweryn P, Jonstrup AT, Flygaard RK, Fedosova NU, Hoffmann SV, Boesen T, Brodersen DE. 2014. Structural analysis of the yeast exosome Rrp6p-Rrp47p complex by small-angle X-ray scattering. Biochemical and Biophysical Research Communications 450:634-640. DOI: 10.1016/j.bbrc.2014.06.032, PMID: 24937447
-
(2014)
Biochemical and Biophysical Research Communications
, vol.450
, pp. 634-640
-
-
Dedic, E.1
Seweryn, P.2
Jonstrup, A.T.3
Flygaard, R.K.4
Fedosova, N.U.5
Hoffmann, S.V.6
Boesen, T.7
Brodersen, D.E.8
-
14
-
-
84876040204
-
The RNA exosome complex central channel controls boThexonuclease and endonuclease Dis3 activities in vivo and in vitro
-
PMID: 23404585
-
Drazkowska K, Tomecki R, Stodus K, Kowalska K, Czarnocki-Cieciura M, Dziembowski A. 2013. The RNA exosome complex central channel controls boThexonuclease and endonuclease Dis3 activities in vivo and in vitro. Nucleic Acids Research 41:3845-3858. DOI: 10.1093/nar/gkt060, PMID: 23404585
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 3845-3858
-
-
Drazkowska, K.1
Tomecki, R.2
Stodus, K.3
Kowalska, K.4
Czarnocki-Cieciura, M.5
Dziembowski, A.6
-
15
-
-
77949535720
-
Features and development of Coot
-
PMID: 20383002
-
Emsley P, Lohkamp B, Scott WG, Cowtan K. 2010. Features and development of Coot. Acta Crystallographica Section D Biological Crystallography 66:486-501. DOI: 10.1107/S0907444910007493, PMID: 20383002
-
(2010)
Acta Crystallographica Section D Biological Crystallography
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
16
-
-
85008474084
-
Insight into the RNA exosome complex through modeling pontocerebellar hypoplasia type 1b disease mutations in yeast
-
PMID: 27777260
-
Fasken MB, Losh JS, Leung SW, Brutus S, Avin B, Vaught JC, Potter-Birriel J, Craig T, Conn GL, Mills-Lujan K, Corbett AH, van Hoof A. 2017. Insight into the RNA exosome complex through modeling pontocerebellar hypoplasia type 1b disease mutations in yeast. Genetics 205:221-237. DOI: 10.1534/genetics.116.195917, PMID: 27777260
-
(2017)
Genetics
, vol.205
, pp. 221-237
-
-
Fasken, M.B.1
Losh, J.S.2
Leung, S.W.3
Brutus, S.4
Avin, B.5
Vaught, J.C.6
Potter-Birriel, J.7
Craig, T.8
Conn, G.L.9
Mills-Lujan, K.10
Corbett, A.H.11
Van Hoof, A.12
-
17
-
-
84892399891
-
The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae
-
PMID: 24224060
-
Feigenbutz M, Garland W, Turner M, Mitchell P. 2013a. The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae. PLoS One 8: e80752. DOI: 10.1371/journal.pone.0080752, PMID: 24224060
-
(2013)
Plos One
, vol.8
-
-
Feigenbutz, M.1
Garland, W.2
Turner, M.3
Mitchell, P.4
-
18
-
-
84878388270
-
Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47
-
PMID: 23580640
-
Feigenbutz M, Jones R, Besong TM, Harding SE, Mitchell P. 2013b. Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47. Journal of Biological Chemistry 288:15959-15970. DOI: 10.1074/jbc.M112.445759, PMID: 23580640
-
(2013)
Journal of Biological Chemistry
, vol.288
, pp. 15959-15970
-
-
Feigenbutz, M.1
Jones, R.2
Besong, T.M.3
Harding, S.E.4
Mitchell, P.5
-
19
-
-
57749178666
-
Reconstitution of RNA exosomes from human and saccharomyces cerevisiae cloning, expression, purification, and activity assays
-
PMID: 19111177
-
Greimann JC, Lima CD. 2008. Reconstitution of RNA exosomes from human and saccharomyces cerevisiae cloning, expression, purification, and activity assays. Methods in Enzymology 448:185-210. DOI: 10.1016/S0076-6879(08)02610-4, PMID: 19111177
-
(2008)
Methods in Enzymology
, vol.448
, pp. 185-210
-
-
Greimann, J.C.1
Lima, C.D.2
-
21
-
-
84920937373
-
Novel EXOSC3 mutation causes complicated hereditary spastic paraplegia
-
PMID: 25149867
-
Halevy A, Lerer I, Cohen R, Kornreich L, Shuper A, Gamliel M, Zimerman BE, Korabi I, Meiner V, Straussberg R, Lossos A. 2014. Novel EXOSC3 mutation causes complicated hereditary spastic paraplegia. Journal of Neurology 261:2165-2169. DOI: 10.1007/s00415-014-7457-x, PMID: 25149867
-
(2014)
Journal of Neurology
, vol.261
, pp. 2165-2169
-
-
Halevy, A.1
Lerer, I.2
Cohen, R.3
Kornreich, L.4
Shuper, A.5
Gamliel, M.6
Zimerman, B.E.7
Korabi, I.8
Meiner, V.9
Straussberg, R.10
Lossos, A.11
-
22
-
-
84991736463
-
The RNA exosome channeling and direct access conformations have distinct in vivo functions
-
PMID: 27653695
-
Han J, van Hoof A. 2016. The RNA exosome channeling and direct access conformations have distinct in vivo functions. Cell Reports 16:3348-3358. DOI: 10.1016/j.celrep.2016.08.059, PMID: 27653695
-
(2016)
Cell Reports
, vol.16
, pp. 3348-3358
-
-
Han, J.1
Van Hoof, A.2
-
24
-
-
84952683219
-
The regulation and functions of the nuclear RNA exosome complex
-
PMID: 26726035
-
Kilchert C, Wittmann S, Vasiljeva L. 2016. The regulation and functions of the nuclear RNA exosome complex. Nature Reviews Molecular Cell Biology 17:227-239. DOI: 10.1038/nrm.2015.15, PMID: 26726035
-
(2016)
Nature Reviews Molecular Cell Biology
, vol.17
, pp. 227-239
-
-
Kilchert, C.1
Wittmann, S.2
Vasiljeva, L.3
-
25
-
-
84975068585
-
Exosome cofactors connect transcription termination to RNA processing by guiding terminated transcripts to the appropriate exonuclease within the nuclear exosome
-
PMID: 27076633
-
Kim K, Heo DH, Kim I, Suh JY, Kim M. 2016. Exosome cofactors connect transcription termination to RNA processing by guiding terminated transcripts to the appropriate exonuclease within the nuclear exosome. Journal of Biological Chemistry 291:13229-13242. DOI: 10.1074/jbc.M116.715771, PMID: 27076633
-
(2016)
Journal of Biological Chemistry
, vol.291
, pp. 13229-13242
-
-
Kim, K.1
Heo, D.H.2
Kim, I.3
Suh, J.Y.4
Kim, M.5
-
26
-
-
84992358935
-
Structure of a cytoplasmic 11-Subunit RNA exosome complex
-
PMID: 27345150
-
Kowalinski E, Kögel A, Ebert J, Reichelt P, Stegmann E, Habermann B, Conti E. 2016. Structure of a cytoplasmic 11-Subunit RNA exosome complex. Molecular Cell 63:125-134. DOI: 10.1016/j.molcel.2016.05.028, PMID: 27345150
-
(2016)
Molecular Cell
, vol.63
, pp. 125-134
-
-
Kowalinski, E.1
Kögel, A.2
Ebert, J.3
Reichelt, P.4
Stegmann, E.5
Habermann, B.6
Conti, E.7
-
27
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
PMID: 15935758
-
LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E, Jacquier A, Tollervey D. 2005. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121:713-724. DOI: 10.1016/j.cell.2005.04. 029, PMID: 15935758
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
Lacava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
28
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
PMID: 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and clustal X version 2.0. Bioinformatics 23: 2947-2948. DOI: 10.1093/bioinformatics/btm404, PMID: 17846036
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
29
-
-
85018500379
-
Nuclear proximity of Mtr4 to RNA exosome restricts DNA mutational asymmetry
-
PMID: 28431250
-
Lim J, Giri PK, Kazadi D, Laffleur B, Zhang W, Grinstein V, Pefanis E, Brown LM, Ladewig E, Martin O, Chen Y, Rabadan R, Boyer F, Rothschild G, Cogné M, Pinaud E, Deng H, Basu U. 2017. Nuclear proximity of Mtr4 to RNA exosome restricts DNA mutational asymmetry. Cell 169:e515-537. DOI: 10.1016/j.cell.2017.03.043, PMID: 28431250
-
(2017)
Cell
, vol.169
, pp. e515-e537
-
-
Lim, J.1
Giri, P.K.2
Kazadi, D.3
Laffleur, B.4
Zhang, W.5
Grinstein, V.6
Pefanis, E.7
Brown, L.M.8
Ladewig, E.9
Martin, O.10
Chen, Y.11
Rabadan, R.12
Boyer, F.13
Rothschild, G.14
Cogné, M.15
Pinaud, E.16
Deng, H.17
Basu, U.18
-
30
-
-
84893752136
-
Visualization of distinct substrate-recruitment pathways in the yeast exosome by EM
-
PMID: 24336220
-
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW. 2014. Visualization of distinct substrate-recruitment pathways in the yeast exosome by EM. Nature Structural and Molecular Biology 21:95-102. DOI: 10.1038/nsmb. 2736, PMID: 24336220
-
(2014)
Nature Structural and Molecular Biology
, vol.21
, pp. 95-102
-
-
Liu, J.J.1
Bratkowski, M.A.2
Liu, X.3
Niu, C.Y.4
Ke, A.5
Wang, H.W.6
-
31
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
PMID: 17174896
-
Liu Q, Greimann JC, Lima CD. 2006. Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 127:1223-1237. DOI: 10.1016/j.cell.2006.10.037, PMID: 17174896
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
32
-
-
84892409192
-
Widespread genetic heterogeneity in multiple myeloma: Implications for targeted therapy
-
PMID: 24434212
-
Lohr JG, Stojanov P, Carter SL, Cruz-Gordillo P, Lawrence MS, Auclair D, Sougnez C, Knoechel B, Gould J, Saksena G, Cibulskis K, McKenna A, Chapman MA, Straussman R, Levy J, Perkins LM, Keats JJ, Schumacher SE, Rosenberg M, Getz G, et al. 2014. Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy. Cancer Cell 25:91-101. DOI: 10.1016/j.ccr.2013.12.015, PMID: 24434212
-
(2014)
Cancer Cell
, vol.25
, pp. 91-101
-
-
Lohr, J.G.1
Stojanov, P.2
Carter, S.L.3
Cruz-Gordillo, P.4
Lawrence, M.S.5
Auclair, D.6
Sougnez, C.7
Knoechel, B.8
Gould, J.9
Saksena, G.10
Cibulskis, K.11
McKenna, A.12
Chapman, M.A.13
Straussman, R.14
Levy, J.15
Perkins, L.M.16
Keats, J.J.17
Schumacher, S.E.18
Rosenberg, M.19
Getz, G.20
more..
-
33
-
-
80051730960
-
Interaction profiling identifies the human nuclear exosome targeting complex
-
PMID: 21855801
-
Lubas M, Christensen MS, Kristiansen MS, Domanski M, Falkenby LG, Lykke-Andersen S, Andersen JS, Dziembowski A, Jensen TH. 2011. Interaction profiling identifies the human nuclear exosome targeting complex. Molecular Cell 43:624-637. DOI: 10.1016/j.molcel.2011.06.028, PMID: 21855801
-
(2011)
Molecular Cell
, vol.43
, pp. 624-637
-
-
Lubas, M.1
Christensen, M.S.2
Kristiansen, M.S.3
Domanski, M.4
Falkenby, L.G.5
Lykke-Andersen, S.6
Ersen, J.S.7
Dziembowski, A.8
Jensen, T.H.9
-
34
-
-
84874742223
-
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
-
PMID: 23376952
-
Makino DL, Baumgärtner M, Conti E. 2013. Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex. Nature 495:70-75. DOI: 10.1038/nature11870, PMID: 23376952
-
(2013)
Nature
, vol.495
, pp. 70-75
-
-
Makino, D.L.1
Baumgärtner, M.2
Conti, E.3
-
35
-
-
84938809545
-
RNA degradation paths in a 12-subunit nuclear exosome complex
-
PMID: 26222026
-
Makino DL, Schuch B, Stegmann E, Baumgärtner M, Basquin C, Conti E. 2015. RNA degradation paths in a 12-subunit nuclear exosome complex. Nature 524:54-58. DOI: 10.1038/nature14865, PMID: 26222026
-
(2015)
Nature
, vol.524
, pp. 54-58
-
-
Makino, D.L.1
Schuch, B.2
Stegmann, E.3
Baumgärtner, M.4
Basquin, C.5
Conti, E.6
-
36
-
-
78649469070
-
RNA channelling by the eukaryotic exosome
-
PMID: 21072061
-
Malet H, Topf M, Clare DK, Ebert J, Bonneau F, Basquin J, Drazkowska K, Tomecki R, Dziembowski A, Conti E, Saibil HR, Lorentzen E. 2010. RNA channelling by the eukaryotic exosome. EMBO Reports 11:936-942. DOI: 10. 1038/embor.2010.164, PMID: 21072061
-
(2010)
EMBO Reports
, vol.11
, pp. 936-942
-
-
Malet, H.1
Topf, M.2
Clare, D.K.3
Ebert, J.4
Bonneau, F.5
Basquin, J.6
Drazkowska, K.7
Tomecki, R.8
Dziembowski, A.9
Conti, E.10
Saibil, H.R.11
Lorentzen, E.12
-
37
-
-
34447508216
-
Phaser crystallographic software
-
PMID: 19461840
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. 2007. Phaser crystallographic software. Journal of Applied Crystallography 40:658-674. DOI: 10.1107/S0021889807021206, PMID: 19461840
-
(2007)
Journal of Applied Crystallography
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
38
-
-
50249112157
-
A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
-
PMID: 18591258
-
Milligan L, Decourty L, Saveanu C, Rappsilber J, Ceulemans H, Jacquier A, Tollervey D. 2008. A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Molecular and Cellular Biology 28:5446-5457. DOI: 10.1128/MCB.00463-08, PMID: 18591258
-
(2008)
Molecular and Cellular Biology
, vol.28
, pp. 5446-5457
-
-
Milligan, L.1
Decourty, L.2
Saveanu, C.3
Rappsilber, J.4
Ceulemans, H.5
Jacquier, A.6
Tollervey, D.7
-
39
-
-
0028953840
-
Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
-
PMID: 7737504
-
Mumberg D, Müller R, Funk M. 1995. Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156:119-122. DOI: 10.1016/0378-1119(95)00037-7, PMID: 7737504
-
(1995)
Gene
, vol.156
, pp. 119-122
-
-
Mumberg, D.1
Müller, R.2
Funk, M.3
-
40
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
PMID: 27754618
-
Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods in Enzymology 276:307-326. PMID: 27754618
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
41
-
-
84928942103
-
RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity
-
PMID: 25957685
-
Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U. 2015. RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. Cell 161:774-789. DOI: 10.1016/j.cell.2015.04.034, PMID: 25957685
-
(2015)
Cell
, vol.161
, pp. 774-789
-
-
Pefanis, E.1
Wang, J.2
Rothschild, G.3
Lim, J.4
Kazadi, D.5
Sun, J.6
Federation, A.7
Chao, J.8
Elliott, O.9
Liu, Z.P.10
Economides, A.N.11
Bradner, J.E.12
Rabadan, R.13
Basu, U.14
-
42
-
-
85012054078
-
The 3’ to 5’ Exoribonuclease DIS3: From structure and mechanisms to biological functions and role in human disease
-
PMID: 26193331
-
Robinson SR, Oliver AW, Chevassut TJ, Newbury SF. 2015. The 3’ to 5’ Exoribonuclease DIS3: from structure and mechanisms to biological functions and role in human disease. Biomolecules 5:1515-1539. DOI: 10.3390/biom5031515, PMID: 26193331
-
(2015)
Biomolecules
, vol.5
, pp. 1515-1539
-
-
Robinson, S.R.1
Oliver, A.W.2
Chevassut, T.J.3
Newbury, S.F.4
-
43
-
-
29244475356
-
MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation
-
PMID: 163 96833
-
Schilders G, Raijmakers R, Raats JM, Pruijn GJ. 2005. MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation. Nucleic Acids Research 33:6795-6804. DOI: 10.1093/nar/gki982, PMID: 163 96833
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 6795-6804
-
-
Schilders, G.1
Raijmakers, R.2
Raats, J.M.3
Pruijn, G.J.4
-
44
-
-
34250339672
-
C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing
-
PMID: 17412707
-
Schilders G, van Dijk E, Pruijn GJ. 2007. C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing. Nucleic Acids Research 35:2564-2572. DOI: 10.1093/nar/gkm082, PMID: 17412707
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 2564-2572
-
-
Schilders, G.1
Van Dijk, E.2
Pruijn, G.J.3
-
45
-
-
84864322244
-
Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins
-
PMID: 22683267
-
Schmid M, Poulsen MB, Olszewski P, Pelechano V, Saguez C, Gupta I, Steinmetz LM, Moore C, Jensen TH. 2012. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Molecular Cell 47: 267-280. DOI: 10.1016/j.molcel.2012.05.005, PMID: 22683267
-
(2012)
Molecular Cell
, vol.47
, pp. 267-280
-
-
Schmid, M.1
Poulsen, M.B.2
Olszewski, P.3
Pelechano, V.4
Saguez, C.5
Gupta, I.6
Steinmetz, L.M.7
Moore, C.8
Jensen, T.H.9
-
46
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
PMID: 23000172
-
Schneider C, Kudla G, Wlotzka W, Tuck A, Tollervey D. 2012. Transcriptome-wide analysis of exosome targets. Molecular Cell 48:422-433. DOI: 10.1016/j.molcel.2012.08.013, PMID: 23000172
-
(2012)
Molecular Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
47
-
-
84919337863
-
The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase
-
PMID: 25319414
-
Schuch B, Feigenbutz M, Makino DL, Falk S, Basquin C, Mitchell P, Conti E. 2014. The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase. The EMBO Journal 33:2829-2846. DOI: 10.15252/embj.201488757, PMID: 25319414
-
(2014)
The EMBO Journal
, vol.33
, pp. 2829-2846
-
-
Schuch, B.1
Feigenbutz, M.2
Makino, D.L.3
Falk, S.4
Basquin, C.5
Mitchell, P.6
Conti, E.7
-
48
-
-
84949099771
-
A strategy for dissecting the architectures of native macromolecular assemblies
-
PMID: 26436480
-
Shi Y, Pellarin R, Fridy PC, Fernandez-Martinez J, Thompson MK, Li Y, Wang QJ, Sali A, Rout MP, Chait BT. 2015. A strategy for dissecting the architectures of native macromolecular assemblies. Nature Methods 12:1135-1138. DOI: 10.1038/nmeth.3617, PMID: 26436480
-
(2015)
Nature Methods
, vol.12
, pp. 1135-1138
-
-
Shi, Y.1
Pellarin, R.2
Fridy, P.C.3
Fernandez-Martinez, J.4
Thompson, M.K.5
Li, Y.6
Wang, Q.J.7
Sali, A.8
Rout, M.P.9
Chait, B.T.10
-
49
-
-
34548712987
-
The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein
-
PMID: 17704127
-
Stead JA, Costello JL, Livingstone MJ, Mitchell P. 2007. The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein. Nucleic Acids Research 35:5556-5567. DOI: 10.1093/nar/gkm614, PMID: 17704127
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 5556-5567
-
-
Stead, J.A.1
Costello, J.L.2
Livingstone, M.J.3
Mitchell, P.4
-
50
-
-
84887043926
-
Cotranscriptional recruitment of RNA exosome cofactors Rrp47p and Mpp6p and two distinct Trf-Air-Mtr4 polyadenylation (TRAMP) complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant messenger ribonucleoprotein particle (mRNP) in yeast
-
PMID: 24047896
-
Stuparevic I, Mosrin-Huaman C, Hervouet-Coste N, Remenaric M, Rahmouni AR. 2013. Cotranscriptional recruitment of RNA exosome cofactors Rrp47p and Mpp6p and two distinct Trf-Air-Mtr4 polyadenylation (TRAMP) complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant messenger ribonucleoprotein particle (mRNP) in yeast. Journal of Biological Chemistry 288:31816-31829. DOI: 10.1074/jbc. M113.491290, PMID: 24047896
-
(2013)
Journal of Biological Chemistry
, vol.288
, pp. 31816-31829
-
-
Stuparevic, I.1
Mosrin-Huaman, C.2
Hervouet-Coste, N.3
Remenaric, M.4
Rahmouni, A.R.5
-
51
-
-
84940378977
-
The Exosome is recruited to RNA substrates through specific adaptor proteins
-
PMID: 26317469
-
Thoms M, Thomson E, Baßler J, Gnädig M, Griesel S, Hurt E. 2015. The Exosome is recruited to RNA substrates through specific adaptor proteins. Cell 162:1029-1038. DOI: 10.1016/j.cell.2015.07.060, PMID: 26317469
-
(2015)
Cell
, vol.162
, pp. 1029-1038
-
-
Thoms, M.1
Thomson, E.2
Baßler, J.3
Gnädig, M.4
Griesel, S.5
Hurt, E.6
-
52
-
-
77954877566
-
The human core exosome interacts with differentially localized processive RNases: Hdis3 and hDIS3L
-
PMID: 20531386
-
Tomecki R, Kristiansen MS, Lykke-Andersen S, Chlebowski A, Larsen KM, Szczesny RJ, Drazkowska K, Pastula A, Andersen JS, Stepien PP, Dziembowski A, Jensen TH. 2010. The human core exosome interacts with differentially localized processive RNases: hdis3 and hDIS3L. The EMBO Journal 29:2342-2357. DOI: 10.1038/emboj.2010.121, PMID: 20531386
-
(2010)
The EMBO Journal
, vol.29
, pp. 2342-2357
-
-
Tomecki, R.1
Kristiansen, M.S.2
Lykke-Andersen, S.3
Chlebowski, A.4
Larsen, K.M.5
Szczesny, R.J.6
Drazkowska, K.7
Pastula, A.8
Ersen, J.S.9
Stepien, P.P.10
Dziembowski, A.11
Jensen, T.H.12
-
53
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
PMID: 15828860
-
Vanácová S, Wolf J, Martin G, Blank D, Dettwiler S, Friedlein A, Langen H, Keith G, Keller W. 2005. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biology 3:e189. DOI: 10.1371/journal.pbio. 0030189, PMID: 15828860
-
(2005)
Plos Biology
, vol.3
-
-
Vanácová, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
54
-
-
84861608931
-
Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration
-
PMID: 22544365
-
Wan J, Yourshaw M, Mamsa H, Rudnik-Schöneborn S, Menezes MP, Hong JE, Leong DW, Senderek J, Salman MS, Chitayat D, Seeman P, von Moers A, Graul-Neumann L, Kornberg AJ, Castro-Gago M, Sobrido MJ, Sanefuji M, Shieh PB, Salamon N, Kim RC, et al. 2012. Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration. Nature Genetics 44:704-708. DOI: 10.1038/ng.2254, PMID: 22544365
-
(2012)
Nature Genetics
, vol.44
, pp. 704-708
-
-
Wan, J.1
Yourshaw, M.2
Mamsa, H.3
Rudnik-Schöneborn, S.4
Menezes, M.P.5
Hong, J.E.6
Leong, D.W.7
Senderek, J.8
Salman, M.S.9
Chitayat, D.10
Seeman, P.11
Von Moers, A.12
Graul-Neumann, L.13
Kornberg, A.J.14
Castro-Gago, M.15
Sobrido, M.J.16
Sanefuji, M.17
Shieh, P.B.18
Salamon, N.19
Kim, R.C.20
more..
-
55
-
-
36749085158
-
Architecture of the yeast Rrp44 exosome complex suggests routes of RNA recruitment for 3’ end processing
-
PMID: 17942686
-
Wang HW, Wang J, Ding F, Callahan K, Bratkowski MA, Butler JS, Nogales E, Ke A. 2007. Architecture of the yeast Rrp44 exosome complex suggests routes of RNA recruitment for 3’ end processing. PNAS 104:16844-16849. DOI: 10.1073/pnas.0705526104, PMID: 17942686
-
(2007)
PNAS
, vol.104
, pp. 16844-16849
-
-
Wang, H.W.1
Wang, J.2
Ding, F.3
Callahan, K.4
Bratkowski, M.A.5
Butler, J.S.6
Nogales, E.7
Ke, A.8
-
56
-
-
84904821452
-
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
-
PMID: 25043052
-
Wasmuth E V, Januszyk K, Lima CD. 2014. Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA. Nature 511:435-439. DOI: 10.1038/nature13406, PMID: 25043052
-
(2014)
Nature
, vol.511
, pp. 435-439
-
-
Wasmuth, E.V.1
Januszyk, K.2
Lima, C.D.3
-
57
-
-
84867395423
-
Exo-and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel
-
PMID: 22902556
-
Wasmuth E V, Lima CD. 2012. Exo-and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel. Molecular Cell 48:133-144. DOI: 10. 1016/j.molcel.2012.07.012, PMID: 22902556
-
(2012)
Molecular Cell
, vol.48
, pp. 133-144
-
-
Wasmuth, E.V.1
Lima, C.D.2
-
58
-
-
85013998934
-
The Rrp6 C-terminal domain binds RNA and activates the nuclear RNA exosome
-
PMID: 27899565
-
Wasmuh E V, Lima CD. 2017. The Rrp6 C-terminal domain binds RNA and activates the nuclear RNA exosome. Nucleic Acids Research 45:846-860. DOI: 10.1093/nar/gkw1152, PMID: 27899565
-
(2017)
Nucleic Acids Research
, vol.45
, pp. 846-860
-
-
Wasmuh, E.V.1
Lima, C.D.2
-
59
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
PMID: 19151095
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. 2009. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25:1189-1191. DOI: 10.1093/bioinformatics/btp033, PMID: 19151095
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
60
-
-
84923614495
-
Growth-based determination and biochemical confirmation of genetic requirements for protein degradation in Saccharomyces cerevisiae
-
PMID: 25742191
-
Watts SG, Crowder JJ, Coffey SZ, Rubenstein EM. 2015. Growth-based determination and biochemical confirmation of genetic requirements for protein degradation in Saccharomyces cerevisiae. Journal of Visualized Experiments 96:e52428. DOI: 10.3791/52428, PMID: 25742191
-
(2015)
Journal of Visualized Experiments
, vol.96
-
-
Watts, S.G.1
Crowder, J.J.2
Coffey, S.Z.3
Rubenstein, E.M.4
-
61
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
PMID: 15 935759
-
Wyers F, Rougemaille M, Badis G, Rousselle JC, Dufour ME, Boulay J, Régnault B, Devaux F, Namane A, Séraphin B, Libri D, Jacquier A. 2005. Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121:725-737. DOI: 10.1016/j.cell.2005.04.030, PMID: 15 935759
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.C.4
Dufour, M.E.5
Boulay, J.6
Régnault, B.7
Devaux, F.8
Namane, A.9
Séraphin, B.10
Libri, D.11
Jacquier, A.12
-
62
-
-
85014062900
-
Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors
-
PMID: 28202538
-
Zinder JC, Lima CD. 2017. Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors. Genes and Development 31:88-100. DOI: 10.1101/gad.294769.116, PMID: 28202538
-
(2017)
Genes and Development
, vol.31
, pp. 88-100
-
-
Zinder, J.C.1
Lima, C.D.2
-
63
-
-
84995545531
-
Nuclear RNA exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3
-
PMID: 27818140
-
Zinder JC, Wasmuth E V, Lima CD. 2016. Nuclear RNA exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3. Molecular Cell 64:734-745. DOI: 10.1016/j.molcel.2016.09.038, PMID: 27818140
-
(2016)
Molecular Cell
, vol.64
, pp. 734-745
-
-
Zinder, J.C.1
Wasmuth, E.V.2
Lima, C.D.3
|