-
2
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ → 5′ exoribonucleases
-
P. Mitchell, E. Petfalski, A. Shevchenko, M. Mann, and D. Tollervey The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′ → 5′ exoribonucleases Cell 91 1997 457 466
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
3
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
Q. Liu, J.C. Greimann, and C.D. Lima Reconstitution, activities, and structure of the eukaryotic RNA exosome Cell 127 2006 1223 1237
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
5
-
-
33846068920
-
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
-
A. Dziembowski, E. Lorentzen, E. Conti, and B. Seraphin A single subunit, Dis3, is essentially responsible for yeast exosome core activity Nat. Struct. Mol. Biol. 14 2007 15 22
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 15-22
-
-
Dziembowski, A.1
Lorentzen, E.2
Conti, E.3
Seraphin, B.4
-
7
-
-
55549097135
-
Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants
-
J. Assenholt, J. Mouaikel, K.R. Andersen, D.E. Brodersen, D. Libri, and T.H. Jensen Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants RNA 14 2008 2305 2313
-
(2008)
RNA
, vol.14
, pp. 2305-2313
-
-
Assenholt, J.1
Mouaikel, J.2
Andersen, K.R.3
Brodersen, D.E.4
Libri, D.5
Jensen, T.H.6
-
8
-
-
0032557455
-
Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation
-
M.W. Briggs, K.T. Burkard, and J.S. Butler Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation J. Biol. Chem. 273 1998 13255 13263
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 13255-13263
-
-
Briggs, M.W.1
Burkard, K.T.2
Butler, J.S.3
-
9
-
-
0042834089
-
Contribution of domain structure to the RNA 3′ end processing and degradation functions of the nuclear exosome subunit Rrp6p
-
S. Phillips, and J.S. Butler Contribution of domain structure to the RNA 3′ end processing and degradation functions of the nuclear exosome subunit Rrp6p RNA 9 2003 1098 1107
-
(2003)
RNA
, vol.9
, pp. 1098-1107
-
-
Phillips, S.1
Butler, J.S.2
-
10
-
-
84874742223
-
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
-
D.L. Makino, M. Baumgartner, and E. Conti Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex Nature 495 2013 70 75
-
(2013)
Nature
, vol.495
, pp. 70-75
-
-
Makino, D.L.1
Baumgartner, M.2
Conti, E.3
-
11
-
-
84895882408
-
RRP6 from Trypanosoma brucei: Crystal structure of the catalytic domain, association with EAP3 and activity towards structured and non-structured RNA substrates
-
R.L. Barbosa, P. Legrand, F. Wien, B. Pineau, A. Thompson, and B.G. Guimaraes RRP6 from Trypanosoma brucei: crystal structure of the catalytic domain, association with EAP3 and activity towards structured and non-structured RNA substrates PLoS One 9 2014 e89138
-
(2014)
PLoS One
, vol.9
, pp. 89138
-
-
Barbosa, R.L.1
Legrand, P.2
Wien, F.3
Pineau, B.4
Thompson, A.5
Guimaraes, B.G.6
-
12
-
-
79960473450
-
Activities of human RRP6 and structure of the human RRP6 catalytic domain
-
K. Januszyk, Q. Liu, and C.D. Lima Activities of human RRP6 and structure of the human RRP6 catalytic domain RNA 17 2011 1566 1577
-
(2011)
RNA
, vol.17
, pp. 1566-1577
-
-
Januszyk, K.1
Liu, Q.2
Lima, C.D.3
-
13
-
-
33747041640
-
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain
-
S.F. Midtgaard, J. Assenholt, A.T. Jonstrup, L.B. Van, T.H. Jensen, and D.E. Brodersen Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain Proc. Natl. Acad. Sci. U.S.A. 103 2006 11898 11903
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 11898-11903
-
-
Midtgaard, S.F.1
Assenholt, J.2
Jonstrup, A.T.3
Van, L.B.4
Jensen, T.H.5
Brodersen, D.E.6
-
14
-
-
21744450431
-
Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing
-
Y. Zuo, Y. Wang, and A. Malhotra Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing Structure 13 2005 973 984
-
(2005)
Structure
, vol.13
, pp. 973-984
-
-
Zuo, Y.1
Wang, Y.2
Malhotra, A.3
-
15
-
-
84878388270
-
Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47
-
M. Feigenbutz, R. Jones, T.M. Besong, S.E. Harding, and P. Mitchell Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47 J. Biol. Chem. 288 2013 15959 15970
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 15959-15970
-
-
Feigenbutz, M.1
Jones, R.2
Besong, T.M.3
Harding, S.E.4
Mitchell, P.5
-
16
-
-
77955964738
-
Rrp47 and the function of the Sas10/C1D domain
-
P. Mitchell Rrp47 and the function of the Sas10/C1D domain Biochem. Soc. Trans. 38 2010 1088 1092
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 1088-1092
-
-
Mitchell, P.1
-
17
-
-
34548712987
-
The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein
-
J.A. Stead, J.L. Costello, M.J. Livingstone, and P. Mitchell The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein Nucleic Acids Res. 35 2007 5556 5567
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5556-5567
-
-
Stead, J.A.1
Costello, J.L.2
Livingstone, M.J.3
Mitchell, P.4
-
18
-
-
0141669145
-
Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs
-
P. Mitchell, E. Petfalski, R. Houalla, A. Podtelejnikov, M. Mann, and D. Tollervey Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs Mol. Cell. Biol. 23 2003 6982 6992
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 6982-6992
-
-
Mitchell, P.1
Petfalski, E.2
Houalla, R.3
Podtelejnikov, A.4
Mann, M.5
Tollervey, D.6
-
19
-
-
0033981301
-
Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
-
A. van Hoof, P. Lennertz, and R. Parker Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs Mol. Cell. Biol. 20 2000 441 452
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 441-452
-
-
Van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
20
-
-
84892399891
-
The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae
-
M. Feigenbutz, W. Garland, M. Turner, and P. Mitchell The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae PLoS One 8 2013 e80752
-
(2013)
PLoS One
, vol.8
, pp. 80752
-
-
Feigenbutz, M.1
Garland, W.2
Turner, M.3
Mitchell, P.4
-
21
-
-
79953017227
-
The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3′-maturation
-
J.L. Costello, J.A. Stead, M. Feigenbutz, R.M. Jones, and P. Mitchell The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3′-maturation J. Biol. Chem. 286 2011 4535 4543
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 4535-4543
-
-
Costello, J.L.1
Stead, J.A.2
Feigenbutz, M.3
Jones, R.M.4
Mitchell, P.5
-
22
-
-
4644319196
-
CDtool-an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving
-
J.G. Lees, B.R. Smith, F. Wien, A.J. Miles, and B.A. Wallace CDtool-an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving Anal. Biochem. 332 2004 285 289
-
(2004)
Anal. Biochem.
, vol.332
, pp. 285-289
-
-
Lees, J.G.1
Smith, B.R.2
Wien, F.3
Miles, A.J.4
Wallace, B.A.5
-
23
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
P.V. Konarev, M.V. Petoukhov, V.V. Volkov, and D.I. Svergun ATSAS 2.1, a program package for small-angle scattering data analysis J. Appl. Cryst. 39 2006 277 286
-
(2006)
J. Appl. Cryst.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
24
-
-
62649139615
-
DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
-
D. Franke, and D.I. Svergun DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering J. Appl. Cryst. 42 2009 342 346
-
(2009)
J. Appl. Cryst.
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.I.2
-
25
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
V.V. Volkov, and D.I. Svergun Uniqueness of ab initio shape determination in small-angle scattering J. Appl. Cryst. 36 2003 860 864
-
(2003)
J. Appl. Cryst.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
26
-
-
77955358961
-
Using situs for the integration of multi-resolution structures
-
W. Wriggers Using situs for the integration of multi-resolution structures Biophys. Rev. 2 2010 21 27
-
(2010)
Biophys. Rev.
, vol.2
, pp. 21-27
-
-
Wriggers, W.1
-
27
-
-
4444221565
-
UCSF chimera - A visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF chimera - a visualization system for exploratory research and analysis J. Comp. Chem. 25 2004 1605 1612
-
(2004)
J. Comp. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
28
-
-
45849096536
-
Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
-
L. Whitmore, and B.A. Wallace Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases Biopolymers 89 2008 392 400
-
(2008)
Biopolymers
, vol.89
, pp. 392-400
-
-
Whitmore, L.1
Wallace, B.A.2
-
29
-
-
84887043926
-
Cotranscriptional recruitment of RNA exosome cofactors Rrp47p and Mpp6p and two distinct Trf-Air-Mtr4 polyadenylation (TRAMP) complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant messenger ribonucleoprotein particle (mRNP) in yeast
-
I. Stuparevic, C. Mosrin-Huaman, N. Hervouet-Coste, M. Remenaric, and A.R. Rahmouni Cotranscriptional recruitment of RNA exosome cofactors Rrp47p and Mpp6p and two distinct Trf-Air-Mtr4 polyadenylation (TRAMP) complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant messenger ribonucleoprotein particle (mRNP) in yeast J. Biol. Chem. 288 2013 31816 31829
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 31816-31829
-
-
Stuparevic, I.1
Mosrin-Huaman, C.2
Hervouet-Coste, N.3
Remenaric, M.4
Rahmouni, A.R.5
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