메뉴 건너뛰기




Volumn 41, Issue 6, 2013, Pages 3845-3858

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; FUNGAL RNA; PROTEIN DIS3; PROTEIN RRP41; RIBONUCLEASE; RNA EXOSOME COMPLEX; SINGLE STRANDED RNA; UNCLASSIFIED DRUG;

EID: 84876040204     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt060     Document Type: Article
Times cited : (49)

References (32)
  • 1
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 30!50 exoribonucleases
    • Mitchell, P., Petfalski, E., Shevchenko, A., Mann,M. and Tollervey, D. (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 30!50 exoribonucleases. Cell, 91, 457-466.
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1    Petfalski, E.2    Shevchenko, A.3    Mann, M.4    Tollervey, D.5
  • 2
    • 77951759115 scopus 로고    scopus 로고
    • Mechanisms of RNA degradation by the eukaryotic exosome
    • Tomecki, R., Drazkowska,K. and Dziembowski, A. (2010) Mechanisms of RNA degradation by the eukaryotic exosome. Chembiochem, 11, 938-945.
    • (2010) Chembiochem , vol.11 , pp. 938-945
    • Tomecki, R.1    Drazkowska, K.2    Dziembowski, A.3
  • 4
    • 38049069276 scopus 로고    scopus 로고
    • Degradation of hypomodified tRNAi Met in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p
    • Wang, X., Jia, H., Jankowsky,E. and Anderson, J.T. (2008) Degradation of hypomodified tRNAi Met in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p. RNA, 14, 107-116.
    • (2008) RNA , vol.14 , pp. 107-116
    • Wang, X.1    Jia, H.2    Jankowsky, E.3    Anderson, J.T.4
  • 5
    • 34547623918 scopus 로고    scopus 로고
    • Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function
    • Isken,O. and Maquat, L.E. (2007) Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev., 21, 1833-1856.
    • (2007) Genes Dev. , vol.21 , pp. 1833-1856
    • Isken, O.1    Maquat, L.E.2
  • 6
    • 33846068920 scopus 로고    scopus 로고
    • A single subunit, Dis3, is essentially responsible for yeast exosome core activity
    • Dziembowski, A., Lorentzen, E., Conti,E. and Seraphin, B. (2007) A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat. Struct. Mol. Biol., 14, 15-22.
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 15-22
    • Dziembowski, A.1    Lorentzen, E.2    Conti, E.3    Seraphin, B.4
  • 7
    • 33845407784 scopus 로고    scopus 로고
    • Reconstitution, activities, and structure of the eukaryotic RNA exosome
    • Liu, Q., Greimann, J.C. and Lima, C.D. (2006) Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell, 127, 1223-1237.
    • (2006) Cell , vol.127 , pp. 1223-1237
    • Liu, Q.1    Greimann, J.C.2    Lima, C.D.3
  • 8
    • 34447300418 scopus 로고    scopus 로고
    • The exosome subunit Rrp44 plays a direct role in RNA substrate recognition
    • Schneider, C., Anderson, J.T. and Tollervey, D. (2007) The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol. Cell, 27, 324-331.
    • (2007) Mol. Cell , vol.27 , pp. 324-331
    • Schneider, C.1    Anderson, J.T.2    Tollervey, D.3
  • 9
    • 70350336247 scopus 로고    scopus 로고
    • The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
    • Bonneau, F., Basquin, J., Ebert, J., Lorentzen,E. and Conti, E. (2009) The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell, 139, 547-559.
    • (2009) Cell , vol.139 , pp. 547-559
    • Bonneau, F.1    Basquin, J.2    Ebert, J.3    Lorentzen, E.4    Conti, E.5
  • 10
    • 79960681216 scopus 로고    scopus 로고
    • Rrp6, rrp47 and cofactors of the nuclear exosome
    • Butler, J.S. and Mitchell, P. (2011) Rrp6, rrp47 and cofactors of the nuclear exosome. Adv. Exp. Med. Biol., 702, 91-104.
    • (2011) Adv. Exp. Med. Biol. , vol.702 , pp. 91-104
    • Butler, J.S.1    Mitchell, P.2
  • 11
    • 62049085366 scopus 로고    scopus 로고
    • The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
    • Schneider, C., Leung, E., Brown,J. and Tollervey, D. (2009) The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res., 37, 1127-1140.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1127-1140
    • Schneider, C.1    Leung, E.2    Brown, J.3    Tollervey, D.4
  • 13
    • 57749189164 scopus 로고    scopus 로고
    • Endonucleolytic RNA cleavage by a eukaryotic exosome
    • Lebreton, A., Tomecki, R., Dziembowski,A. and Seraphin, B. (2008) Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature, 456, 993-996.
    • (2008) Nature , vol.456 , pp. 993-996
    • Lebreton, A.1    Tomecki, R.2    Dziembowski, A.3    Seraphin, B.4
  • 14
    • 33748414894 scopus 로고    scopus 로고
    • Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex
    • Frazao, C., McVey, C.E., Amblar, M., Barbas, A., Vonrhein, C., Arraiano, C.M. and Carrondo, M.A. (2006) Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature, 443, 110-114.
    • (2006) Nature , vol.443 , pp. 110-114
    • Frazao, C.1    McVey, C.E.2    Amblar, M.3    Barbas, A.4    Vonrhein, C.5    Arraiano, C.M.6    Carrondo, M.A.7
  • 15
    • 84867500127 scopus 로고    scopus 로고
    • The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function
    • Schaeffer, D., Reis, F.P., Johnson, S.J., Arraiano, C.M. and van Hoof, A. (2012) The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function. Nucleic Acids Res., 40, 9298-9307.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9298-9307
    • Schaeffer, D.1    Reis, F.P.2    Johnson, S.J.3    Arraiano, C.M.4    Van Hoof, A.5
  • 21
    • 40849106786 scopus 로고    scopus 로고
    • Structure of the active subunit of the yeast exosome core, Rrp44: Diverse modes of substrate recruitment in the RNase II nuclease family
    • Lorentzen, E., Basquin, J., Tomecki, R., Dziembowski,A. and Conti, E. (2008) Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family. Mol. Cell, 29, 717-728.
    • (2008) Mol. Cell , vol.29 , pp. 717-728
    • Lorentzen, E.1    Basquin, J.2    Tomecki, R.3    Dziembowski, A.4    Conti, E.5
  • 22
    • 57749178666 scopus 로고    scopus 로고
    • Reconstitution of RNA exosomes from human and Saccharomyces cerevisiae: Cloning, expression, purification, and activity assays
    • Greimann, J.C. and Lima, C.D. (2008) Reconstitution of RNA exosomes from human and Saccharomyces cerevisiae: cloning, expression, purification, and activity assays. Methods Enzymol., 448, 185-210.
    • (2008) Methods Enzymol. , vol.448 , pp. 185-210
    • Greimann, J.C.1    Lima, C.D.2
  • 23
    • 84867395423 scopus 로고    scopus 로고
    • Exo-and endoribonucleolytic activities of yeast cytoplasmic and nuclear rna exosomes are dependent on the noncatalytic core and central channel
    • Wasmuth, E.V. and Lima, C.D. (2012) Exo-and Endoribonucleolytic Activities of Yeast Cytoplasmic and Nuclear RNA Exosomes Are Dependent on the Noncatalytic Core and Central Channel. Mol. Cell, 48, 133-144.
    • (2012) Mol. Cell , vol.48 , pp. 133-144
    • Wasmuth, E.V.1    Lima, C.D.2
  • 24
    • 84863869059 scopus 로고    scopus 로고
    • RNA Degradation in Saccharomyces cerevisiae
    • Parker, R. (2012) RNA Degradation in Saccharomyces cerevisiae. Genetics, 191, 671-702.
    • (2012) Genetics , vol.191 , pp. 671-702
    • Parker, R.1
  • 25
    • 0033214061 scopus 로고    scopus 로고
    • The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
    • Dunckley,T. and Parker, R. (1999) The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J., 18, 5411-5422.
    • (1999) EMBO J. , vol.18 , pp. 5411-5422
    • Dunckley, T.1    Parker, R.2
  • 26
    • 0036276986 scopus 로고    scopus 로고
    • Analyzing mRNA decay in Saccharomyces cerevisiae
    • Steiger, M.A. and Parker, R. (2002) Analyzing mRNA decay in Saccharomyces cerevisiae. Methods Enzymol., 351, 648-660.
    • (2002) Methods Enzymol. , vol.351 , pp. 648-660
    • Steiger, M.A.1    Parker, R.2
  • 27
    • 79952304472 scopus 로고    scopus 로고
    • Different nuclease requirements for exosome-mediated degradation of normal and nonstop mRNAs
    • Schaeffer,D. and van Hoof, A. (2011) Different nuclease requirements for exosome-mediated degradation of normal and nonstop mRNAs. Proc. Natl Acad. Sci. USA, 108, 2366-2371.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 2366-2371
    • Schaeffer, D.1    Van Hoof, A.2
  • 28
    • 0037155584 scopus 로고    scopus 로고
    • Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
    • van Hoof, A., Frischmeyer, P.A., Dietz, H.C. and Parker, R. (2002) Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science, 295, 2262-2264.
    • (2002) Science , vol.295 , pp. 2262-2264
    • Van Hoof, A.1    Frischmeyer, P.A.2    Dietz, H.C.3    Parker, R.4
  • 29
    • 79960766105 scopus 로고    scopus 로고
    • Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile
    • Amlacher, S., Sarges, P., Flemming, D., van Noort, V., Kunze, R., Devos, D.P., Arumugam, M., Bork,P. and Hurt, E. (2011) Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile. Cell, 146, 277-289.
    • (2011) Cell , vol.146 , pp. 277-289
    • Amlacher, S.1    Sarges, P.2    Flemming, D.3    Van Noort, V.4    Kunze, R.5    Devos, D.P.6    Arumugam, M.7    Bork, P.8    Hurt, E.9
  • 31
    • 84862991581 scopus 로고    scopus 로고
    • Elastic coupling between RNA degradation and unwinding by an exoribonuclease
    • Lee, G., Bratkowski, M.A., Ding, F., Ke,A. and Ha, T. (2012) Elastic coupling between RNA degradation and unwinding by an exoribonuclease. Science, 336, 1726-1729.
    • (2012) Science , vol.336 , pp. 1726-1729
    • Lee, G.1    Bratkowski, M.A.2    Ding, F.3    Ke, A.4    Ha, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.