-
1
-
-
84863869059
-
RNA degradation in Saccharomyces cerevisae
-
doi:10.1534/genetics.111.137265. PubMed: 22785621
-
Parker R (2012) RNA degradation in Saccharomyces cerevisae. Genetics 191: 671-702. doi:10.1534/genetics.111.137265. PubMed: 22785621.
-
(2012)
Genetics
, vol.191
, pp. 671-702
-
-
Parker, R.1
-
2
-
-
60149090021
-
The Many Pathways of RNA Degradation
-
doi:10.1016/j.cell.2009.01.019. PubMed: 19239894
-
Houseley J, Tollervey D (2009) The Many Pathways of RNA Degradation. Cell 136: 763-776. doi:10.1016/j.cell.2009.01.019. PubMed: 19239894.
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
3
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
doi:10.1016/j.molcel.2012.08.018. PubMed: 23000176
-
Gudipati RK, Xu Z, Lebreton A, Séraphin B, Steinmetz LM et al. (2012) Extensive degradation of RNA precursors by the exosome in wild-type cells. Mol Cell 48: 409-421. doi:10.1016/j.molcel.2012.08.018. PubMed: 23000176.
-
(2012)
Mol Cell
, vol.48
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Séraphin, B.4
Steinmetz, L.M.5
-
4
-
-
84877822782
-
RNA quality control in the nucleus: The angel's share of RNA
-
doi:10.1016/j.bbagrm.2013.02.012. PubMed: 23474120
-
Porrua O, Libri D (2013) RNA quality control in the nucleus: the angel's share of RNA. Biochim Biophys Acta 1829: 604-611. doi:10.1016/j.bbagrm.2013.02. 012. PubMed: 23474120.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 604-611
-
-
Porrua, O.1
Libri, D.2
-
5
-
-
84877837932
-
RNA decay machines: The exosome
-
doi:10.1016/j.bbagrm.2013.01.006. PubMed: 23352926
-
Chlebowski A, Lubas M, Jensen TH, Dziembowski A (2013) RNA decay machines: the exosome. Biochim Biophys Acta 1829: 552-560. doi:10.1016/j.bbagrm. 2013.01.006. PubMed: 23352926.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 552-560
-
-
Chlebowski, A.1
Lubas, M.2
Jensen, T.H.3
Dziembowski, A.4
-
6
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′5 exoribonucleases
-
doi:10.1016/S0092-8674(00)80432-8. PubMed: 9390555
-
Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′5 exoribonucleases. Cell 91: 457-466. doi:10.1016/S0092-8674(00)80432-8. PubMed: 9390555.
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
7
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
doi:10.1093/emboj/18.19.5399. PubMed: 10508172
-
Allmang C, Kufel J, Chanfreau G, Mitchell P, Petfalski E et al. (1999) Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J 18: 5399-5410. doi:10.1093/emboj/18.19.5399. PubMed: 10508172.
-
(1999)
EMBO J
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
-
8
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
doi:10.1016/j.cell.2005.04.030. PubMed: 15935759
-
Wyers F, Rougemaille M, Badis G, Rousselle J-C, Dufour M-E et al. (2005) Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121: 725-737. doi:10.1016/j.cell.2005. 04.030. PubMed: 15935759.
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.-C.4
Dufour, M.-E.5
-
9
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
doi:10.1038/nature07747. PubMed: 19169244
-
Neil H, Malabat C, d'Aubenton-Carafa Y, Xu Z, Steinmetz LM et al. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457: 1038-1042. doi:10.1038/nature07747. PubMed: 19169244.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
D'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
-
10
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
doi:10.1038/nature07728. PubMed: 19169243
-
Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S et al. (2009) Bidirectional promoters generate pervasive transcription in yeast. Nature 457: 1033-1037. doi:10.1038/nature07728. PubMed: 19169243.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Münster, S.5
-
11
-
-
0141669145
-
Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs
-
doi:10.1128/MCB.23.19.6982-6992.2003. PubMed: 12972615
-
Mitchell P, Petfalski E, Houalla R, Podtelejnikov A, Mann M et al. (2003) Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs. Mol Cell Biol 23: 6982-6992. doi:10.1128/MCB.23.19.6982-6992.2003. PubMed: 12972615.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 6982-6992
-
-
Mitchell, P.1
Petfalski, E.2
Houalla, R.3
Podtelejnikov, A.4
Mann, M.5
-
12
-
-
77954877566
-
The human core exosome interacts with differentially localized processive RNases: HDIS3 and hDIS3L
-
doi:10.1038/emboj.2010.121. PubMed: 20531386
-
Tomecki R, Kristiansen MS, Lykke-Andersen SOR, Chlebowski A, Larsen KM et al. (2010) The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO J 29: 2342-2357. doi:10.1038/emboj. 2010.121. PubMed: 20531386.
-
(2010)
EMBO J
, vol.29
, pp. 2342-2357
-
-
Tomecki, R.1
Kristiansen, M.S.2
Lykke-Andersen, S.O.R.3
Chlebowski, A.4
Larsen, K.M.5
-
13
-
-
0030836805
-
Comparative sequence analysis of ribonucleases HII, III, II PH and D
-
doi:10.1093/nar/25.16.3187. PubMed: 9241229
-
Mian IS (1997) Comparative sequence analysis of ribonucleases HII, III, II PH and D. Nucleic Acids Res 25: 3187-3195. doi:10.1093/nar/25.16.3187. PubMed: 9241229.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3187-3195
-
-
Mian, I.S.1
-
14
-
-
57749189164
-
Endonucleolytic RNA cleavage by a eukaryotic exosome
-
doi:10.1038/nature07480. PubMed: 19060886
-
Lebreton A, Tomecki R, Dziembowski A, Séraphin B (2008) Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature 456: 993-996. doi:10.1038/nature07480. PubMed: 19060886.
-
(2008)
Nature
, vol.456
, pp. 993-996
-
-
Lebreton, A.1
Tomecki, R.2
Dziembowski, A.3
Séraphin, B.4
-
15
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
doi:10.1038/nsmb.1528. PubMed: 19060898
-
Schaeffer D, Tsanova B, Barbas A, Reis FP, Dastidar EG et al. (2009) The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities. Nat Struct Mol Biol 16: 56-62. doi:10.1038/nsmb.1528. PubMed: 19060898.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
-
16
-
-
62049085366
-
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
-
doi:10.1093/nar/gkn1020. PubMed: 19129231
-
Schneider C, Leung E, Brown J, Tollervey D (2008) The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res 37: 1127-1140. doi:10.1093/nar/gkn1020. PubMed: 19129231.
-
(2008)
Nucleic Acids Res
, vol.37
, pp. 1127-1140
-
-
Schneider, C.1
Leung, E.2
Brown, J.3
Tollervey, D.4
-
17
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
doi: 10.1016/j.cell.2006.10.037. PubMed: 17174896
-
Liu Q, Greimann JC, Lima CD (2006) Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 127: 1223-1237. doi: 10.1016/j.cell.2006.10.037. PubMed: 17174896.
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
18
-
-
70350336247
-
The Yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
doi:10.1016/j.cell. 2009.08.042. PubMed: 19879841
-
Bonneau F, Basquin J, Ebert J, Lorentzen E, Conti E (2009) The Yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell 139: 547-559. doi:10.1016/j.cell. 2009.08.042. PubMed: 19879841.
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
19
-
-
84874742223
-
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
-
doi:10.1038/nature11870. PubMed: 23376952
-
Makino DL, Baumgärtner M, Conti E (2013) Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex. Nature 495: 70-75. doi:10.1038/nature11870. PubMed: 23376952.
-
(2013)
Nature
, vol.495
, pp. 70-75
-
-
Makino, D.L.1
Baumgärtner, M.2
Conti, E.3
-
20
-
-
0031574363
-
The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains
-
doi: 10.1093/nar/25.24.5110. PubMed: 9396823
-
Moser MJ, Holley WR, Chatterjee A, Mian IS (1997) The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains. Nucleic Acids Res 25: 5110-5118. doi: 10.1093/nar/25.24.5110. PubMed: 9396823.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 5110-5118
-
-
Moser, M.J.1
Holley, W.R.2
Chatterjee, A.3
Mian, I.S.4
-
21
-
-
33747041640
-
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain
-
doi:10.1073/pnas.0604731103. PubMed: 16882719
-
Midtgaard SF, Assenholt J, Jonstrup AT, Van LB, Jensen TH et al. (2006) Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain. Proc Natl Acad Sci U S A 103: 11898-11903. doi:10.1073/pnas.0604731103. PubMed: 16882719.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 11898-11903
-
-
Midtgaard, S.F.1
Assenholt, J.2
Jonstrup, A.T.3
Van, L.B.4
Jensen, T.H.5
-
22
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
doi:10.1073/pnas.90.14.6498. PubMed: 8341661
-
Steitz TA, Steitz JA (1993) A general two-metal-ion mechanism for catalytic RNA. Proc Natl Acad Sci U S A 90: 6498-6502. doi:10.1073/pnas.90.14. 6498. PubMed: 8341661.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
23
-
-
0032557455
-
Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation
-
doi:10.1074/jbc.273.21.13255. PubMed: 9582370
-
Briggs MW, Burkard KT, Butler JS (1998) Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation. J Biol Chem 273: 13255-13263. doi:10.1074/jbc.273.21. 13255. PubMed: 9582370.
-
(1998)
J Biol Chem
, vol.273
, pp. 13255-13263
-
-
Briggs, M.W.1
Burkard, K.T.2
Butler, J.S.3
-
24
-
-
0033960962
-
A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with poly(A) polymerase and the hnRNA protein Npl3p
-
doi:10.1128/MCB.20.2.604-616.2000. PubMed: 10611239
-
Burkard KT, Butler JS (2000) A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with poly(A) polymerase and the hnRNA protein Npl3p. Mol Cell Biol 20: 604-616. doi:10.1128/MCB.20.2.604-616.2000. PubMed: 10611239.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 604-616
-
-
Burkard, K.T.1
Butler, J.S.2
-
25
-
-
57149094672
-
Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
-
doi:10.1093/nar/gkn743. PubMed: 18940861
-
Callahan KP, Butler JS (2008) Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p. Nucleic Acids Res 36: 6645-6655. doi:10.1093/nar/gkn743. PubMed: 18940861.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6645-6655
-
-
Callahan, K.P.1
Butler, J.S.2
-
26
-
-
84867395423
-
Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel
-
doi: 10.1016/j.molcel.2012.07.012. PubMed: 22902556
-
Wasmuth EV, Lima CD (2012) Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel. Mol Cell 48: 133-144. doi: 10.1016/j.molcel.2012.07. 012. PubMed: 22902556.
-
(2012)
Mol Cell
, vol.48
, pp. 133-144
-
-
Wasmuth, E.V.1
Lima, C.D.2
-
27
-
-
34548712987
-
The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein
-
doi:10.1093/nar/gkm614. PubMed: 17704127
-
Stead JA, Costello JL, Livingstone MJ, Mitchell P (2007) The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein. Nucleic Acids Res 35: 5556-5567. doi:10.1093/nar/gkm614. PubMed: 17704127.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5556-5567
-
-
Stead, J.A.1
Costello, J.L.2
Livingstone, M.J.3
Mitchell, P.4
-
28
-
-
79953017227
-
The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3′-maturation
-
doi:10.1074/jbc.M110.162826. PubMed: 21135092
-
Costello JL, Stead JA, Feigenbutz M, Jones RM, Mitchell P (2011) The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3′-maturation. J Biol Chem 286: 4535-4543. doi:10.1074/jbc.M110.162826. PubMed: 21135092.
-
(2011)
J Biol Chem
, vol.286
, pp. 4535-4543
-
-
Costello, J.L.1
Stead, J.A.2
Feigenbutz, M.3
Jones, R.M.4
Mitchell, P.5
-
29
-
-
50249112157
-
A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
-
doi:10.1128/MCB.00463-08. PubMed: 18591258
-
Milligan L, Decourty L, Saveanu C, Rappsilber J, Ceulemans H et al. (2008) A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Mol Cell Biol 28: 5446-5457. doi:10.1128/MCB.00463-08. PubMed: 18591258.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5446-5457
-
-
Milligan, L.1
Decourty, L.2
Saveanu, C.3
Rappsilber, J.4
Ceulemans, H.5
-
30
-
-
79960681216
-
Rrp6, Rrp47 and cofactors of the nuclear exosome
-
PubMed: 21713680
-
Butler JS, Mitchell P (2011) Rrp6, Rrp47 and cofactors of the nuclear exosome. Adv Exp Med Biol 702: 91-104. PubMed: 21713680.
-
(2011)
Adv Exp Med Biol
, vol.702
, pp. 91-104
-
-
Butler, J.S.1
Mitchell, P.2
-
31
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
doi:10.1016/j.molcel.2012.08.013. PubMed: 23000172
-
Schneider C, Kudla G, Wlotzka W, Tuck A, Tollervey D (2012) Transcriptome-wide analysis of exosome targets. Mol Cell 48: 422-433. doi:10.1016/j.molcel.2012.08.013. PubMed: 23000172.
-
(2012)
Mol Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
32
-
-
0034653440
-
Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
-
doi:10.1093/emboj/19.6.1357. PubMed: 10716935
-
van Hoof A, Lennertz P, Parker R (2000) Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J 19: 1357-1365. doi:10.1093/emboj/19.6.1357. PubMed: 10716935.
-
(2000)
EMBO J
, vol.19
, pp. 1357-1365
-
-
Van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
33
-
-
0037708880
-
A panoramic view of yeast noncoding RNA processing
-
doi:10.1016/S0092-8674(03)00466-5. PubMed: 12837249
-
Peng WT, Robinson MD, Mnaimneh S, Krogan NJ, Cagney G et al. (2003) A panoramic view of yeast noncoding RNA processing. Cell 113: 919-933. doi:10.1016/S0092-8674(03)00466-5. PubMed: 12837249.
-
(2003)
Cell
, vol.113
, pp. 919-933
-
-
Peng, W.T.1
Robinson, M.D.2
Mnaimneh, S.3
Krogan, N.J.4
Cagney, G.5
-
34
-
-
79551653371
-
Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6
-
doi:10.1073/pnas.1016459108. PubMed: 21149693
-
Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B et al. (2011) Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6. Proc Natl Acad Sci U S A 108: 1058-1063. doi:10.1073/pnas.1016459108. PubMed: 21149693.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 1058-1063
-
-
Lardenois, A.1
Liu, Y.2
Walther, T.3
Chalmel, F.4
Evrard, B.5
-
35
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
doi:10.1126/science.1075090. PubMed: 12399584
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298: 799-804. doi:10.1126/science.1075090. PubMed: 12399584.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
-
36
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
doi:10.1038/nature02800. PubMed: 15343339
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104. doi:10.1038/nature02800. PubMed: 15343339.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
-
37
-
-
84883795504
-
Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast
-
PubMed: 19108609
-
Nishizawa M, Komai T, Katou Y, Shirahige K, Ito T et al. (2008) Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast. PLOS Biol 6: 2817-2830. PubMed: 19108609.
-
(2008)
PLOS Biol
, vol.6
, pp. 2817-2830
-
-
Nishizawa, M.1
Komai, T.2
Katou, Y.3
Shirahige, K.4
Ito, T.5
-
38
-
-
0035064787
-
RNase II levels change according to the growth conditions: Characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II
-
doi:10.1046/j.1365-2958.2001.02342.x. PubMed: 11260472
-
Cairrão F, Chora A, Zilhão R, Carpousis AJ, Arraiano CM (2001) RNase II levels change according to the growth conditions: characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II. Mol Microbiol 39: 1550-1561. doi:10.1046/j.1365-2958.2001.02342.x. PubMed: 11260472.
-
(2001)
Mol Microbiol
, vol.39
, pp. 1550-1561
-
-
Cairrão, F.1
Chora, A.2
Zilhão, R.3
Carpousis, A.J.4
Arraiano, C.M.5
-
39
-
-
77950232101
-
RNase R is a highly unstable protein regulated by growth phase and stress
-
doi:10.1261/rna.1981010. PubMed: 20185542
-
Chen C, Deutscher MP (2010) RNase R is a highly unstable protein regulated by growth phase and stress. RNA 16: 667-672. doi:10.1261/rna.1981010. PubMed: 20185542.
-
(2010)
RNA
, vol.16
, pp. 667-672
-
-
Chen, C.1
Deutscher, M.P.2
-
40
-
-
80053595149
-
Acetylation regulates the stability of a bacterial protein: Growth stage-dependent modification of RNase R
-
doi:10.1016/j.molcel.2011.06.037. PubMed: 21981926
-
Liang W, Malhotra A, Deutscher MP (2011) Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R. Mol Cell 44: 160-166. doi:10.1016/j.molcel.2011.06.037. PubMed: 21981926.
-
(2011)
Mol Cell
, vol.44
, pp. 160-166
-
-
Liang, W.1
Malhotra, A.2
Deutscher, M.P.3
-
41
-
-
84866939617
-
Transfer-messenger RNA-SmpB protein regulates ribonuclease R turnover by promoting binding of HslUV and Lon proteases
-
doi: 10.1074/jbc.M112.375287. PubMed: 22879590
-
Liang W, Deutscher MP (2012) Transfer-messenger RNA-SmpB protein regulates ribonuclease R turnover by promoting binding of HslUV and Lon proteases. J Biol Chem 287: 33472-33479. doi: 10.1074/jbc.M112.375287. PubMed: 22879590.
-
(2012)
J Biol Chem
, vol.287
, pp. 33472-33479
-
-
Liang, W.1
Deutscher, M.P.2
-
42
-
-
84869162368
-
Synergies between RNA degradation and trans-translation in Streptococcus pneumoniae: Cross regulation and co-transcription of RNase R and SmpB
-
doi: 10.1186/1471-2180-12-268. PubMed: 23167513
-
Moreira RN, Domingues S, Viegas SC, Amblar M, Arraiano CM (2012) Synergies between RNA degradation and trans-translation in Streptococcus pneumoniae: cross regulation and co-transcription of RNase R and SmpB. BMC Microbiol 12: 268. doi: 10.1186/1471-2180-12-268. PubMed: 23167513.
-
(2012)
BMC Microbiol
, vol.12
, pp. 268
-
-
Moreira, R.N.1
Domingues, S.2
Viegas, S.C.3
Amblar, M.4
Arraiano, C.M.5
-
43
-
-
84878388270
-
Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47
-
doi:10.1074/jbc.M112.445759. PubMed: 23580640
-
Feigenbutz M, Jones R, Besong TMD, Harding SE, Mitchell P (2013) Assembly of the yeast exoribonuclease Rrp6 with its associated cofactor Rrp47 occurs in the nucleus and is critical for the controlled expression of Rrp47. J Biol Chem 288: 15959-15970. doi:10.1074/jbc.M112.445759. PubMed: 23580640.
-
(2013)
J Biol Chem
, vol.288
, pp. 15959-15970
-
-
Feigenbutz, M.1
Jones, R.2
Besong, T.M.D.3
Harding, S.E.4
Mitchell, P.5
-
44
-
-
84888401056
-
Rrp47 functions in RNA surveillance and stable RNA processing when divorced from the exoribonuclease and exosome-binding domains of Rrp6
-
(. (2013)) PubMed: 24106327
-
Garland W, Feigenbutz M, Turner M, Mitchell P (2013) Rrp47 functions in RNA surveillance and stable RNA processing when divorced from the exoribonuclease and exosome-binding domains of Rrp6. RNA (. (2013)) PubMed: 24106327.
-
(2013)
RNA
-
-
Garland, W.1
Feigenbutz, M.2
Turner, M.3
Mitchell, P.4
-
45
-
-
0033567131
-
The yeast exosome and human PM-Scl are related complexes of 3′5′ exonucleases
-
doi:10.1101/gad.13.16.2148. PubMed: 10465791
-
Allmang C, Petfalski E, Podtelejnikov A, Mann M, Tollervey D et al. (1999) The yeast exosome and human PM-Scl are related complexes of 3′5′ exonucleases. Genes Dev 13: 2148-2158. doi:10.1101/gad.13.16. 2148. PubMed: 10465791.
-
(1999)
Genes Dev
, vol.13
, pp. 2148-2158
-
-
Allmang, C.1
Petfalski, E.2
Podtelejnikov, A.3
Mann, M.4
Tollervey, D.5
-
46
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
PubMed: 2659436
-
Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27. PubMed: 2659436.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
47
-
-
0026512939
-
Multifunctional yeast high-copy-number shuttle vectors
-
doi:10.1016/0378-1119(92)90454-W. PubMed: 1544568
-
Christianson TW, Sikorski RS, Dante M, Shero JH, Hieter P (1992) Multifunctional yeast high-copy-number shuttle vectors. Gene 110: 119-122. doi:10.1016/0378-1119(92)90454-W. PubMed: 1544568.
-
(1992)
Gene
, vol.110
, pp. 119-122
-
-
Christianson, T.W.1
Sikorski, R.S.2
Dante, M.3
Shero, J.H.4
Hieter, P.5
-
48
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
-
doi:10.1002/(SICI)1097-0061(199910)15:14. PubMed: 10514571
-
Goldstein AL, McCusker JH (1999) Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553. doi:10.1002/(SICI)1097-0061(199910)15:14. PubMed: 10514571.
-
(1999)
Yeast
, vol.15
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
49
-
-
84863843241
-
Pex3-anchored Atg36 tags peroxisomes for degradation in Saccharomyces cerevisiae
-
doi:10.1038/emboj.2012.151. PubMed: 22643220
-
Motley AM, Nuttall JM, Hettema EH (2012) Pex3-anchored Atg36 tags peroxisomes for degradation in Saccharomyces cerevisiae. EMBO J 31: 2852-2868. doi:10.1038/emboj.2012.151. PubMed: 22643220.
-
(2012)
EMBO J
, vol.31
, pp. 2852-2868
-
-
Motley, A.M.1
Nuttall, J.M.2
Hettema, E.H.3
-
50
-
-
0023286894
-
Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs
-
PubMed: 2953599
-
Tollervey D, Mattaj IW (1987) Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs. EMBO J 6: 469-476. PubMed: 2953599.
-
(1987)
EMBO J
, vol.6
, pp. 469-476
-
-
Tollervey, D.1
Mattaj, I.W.2
-
51
-
-
34547591343
-
Primer3Plus, an enhanced web interface to Primer3
-
doi:10.1093/nar/gkm093. PubMed: 17485472
-
Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R et al. (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35: W71-W74. doi:10.1093/nar/gkm093. PubMed: 17485472.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Untergasser, A.1
Nijveen, H.2
Rao, X.3
Bisseling, T.4
Geurts, R.5
-
52
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
doi:10.1038/nprot. 2008.73. PubMed: 18546601
-
Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3: 1101-1108. doi:10.1038/nprot. 2008.73. PubMed: 18546601.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
53
-
-
0033981301
-
Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
-
doi:10.1128/MCB.20.2.441-452.2000. PubMed: 10611222
-
van Hoof A, Lennertz P, Parker R (2000) Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol Cell Biol 20: 441-452. doi:10.1128/MCB.20.2.441-452.2000. PubMed: 10611222.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 441-452
-
-
Van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
54
-
-
53949109201
-
Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast
-
doi:10.1016/j.molcel.2008.10.003. PubMed: 18951092
-
Grzechnik P, Kufel J (2008) Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast. Mol Cell 32: 247-258. doi:10.1016/j.molcel.2008.10.003. PubMed: 18951092.
-
(2008)
Mol Cell
, vol.32
, pp. 247-258
-
-
Grzechnik, P.1
Kufel, J.2
-
55
-
-
0025266635
-
Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae
-
doi:10.1016/0022-2836(90)90071-S. PubMed: 2179564
-
Yeh L-CC, Lee JC (1990) Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae. J Mol Biol 211: 699-712. doi:10.1016/0022-2836(90)90071-S. PubMed: 2179564.
-
(1990)
J Mol Biol
, vol.211
, pp. 699-712
-
-
Yeh, L.-C.C.1
Lee, J.C.2
-
56
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
doi:10.1016/S0968-0004(99)01460-7. PubMed: 10542411
-
Warner JR (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem Sci 24: 437-440. doi:10.1016/S0968-0004(99)01460-7. PubMed: 10542411.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
57
-
-
33344476794
-
Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
-
doi:10.1261/rna.2305406. PubMed: 16431988
-
Kadaba S, Wang X, Anderson JT (2006) Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. RNA 12: 508-521. doi:10.1261/rna.2305406. PubMed: 16431988.
-
(2006)
RNA
, vol.12
, pp. 508-521
-
-
Kadaba, S.1
Wang, X.2
Anderson, J.T.3
-
58
-
-
27644457087
-
A nuclear surveillance pathway for mRNAs with defective polyadenylation
-
doi:10.1128/MCB.25.22.9996-10004.2005. PubMed: 16260613
-
Milligan L, Torchet C, Allmang C, Shipman T, Tollervey D (2005) A nuclear surveillance pathway for mRNAs with defective polyadenylation. Mol Cell Biol 25: 9996-10004. doi:10.1128/MCB.25.22.9996-10004.2005. PubMed: 16260613.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 9996-10004
-
-
Milligan, L.1
Torchet, C.2
Allmang, C.3
Shipman, T.4
Tollervey, D.5
-
59
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
doi:10.1038/415141a. PubMed: 11805826
-
Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147. doi:10.1038/415141a. PubMed: 11805826.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bösche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
-
60
-
-
84887043926
-
Co-transcriptional recruitment of the RNA exosome cofactors Rrp47p, Mpp6p and two distinct TRAMP complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant mRNP in yeast
-
(. (2013)) PubMed: 24047896
-
Stuparevic I, Mosrin-Huaman C, Hervouet-Coste N, Remenaric M, Rahmouni AR (2013) Co-transcriptional recruitment of the RNA exosome cofactors Rrp47p, Mpp6p and two distinct TRAMP complexes assists the exonuclease Rrp6p in the targeting and degradation of an aberrant mRNP in yeast. J Biol Chem (. (2013)) PubMed: 24047896.
-
(2013)
J Biol Chem
-
-
Stuparevic, I.1
Mosrin-Huaman, C.2
Hervouet-Coste, N.3
Remenaric, M.4
Rahmouni, A.R.5
-
61
-
-
58549100937
-
Met and polyadenylation of substrate RNAs in Saccharomyces cerevisiae
-
doi:10.1093/nar/gkn925. PubMed: 19042972
-
Met and polyadenylation of substrate RNAs in Saccharomyces cerevisiae. Nucleic Acids Res 37: 298-308. doi:10.1093/nar/gkn925. PubMed: 19042972.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 298-308
-
-
Ozanick, S.G.1
Wang, X.2
Costanzo, M.3
Brost, R.L.4
Boone, C.5
-
62
-
-
34250339672
-
C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in prerRNA processing
-
doi:10.1093/nar/gkm082. PubMed: 17412707
-
Schilders G, van Dijk E, Pruijn GJM (2007) C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in prerRNA processing. Nucleic Acids Res 35: 2564-2572. doi:10.1093/nar/gkm082. PubMed: 17412707.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2564-2572
-
-
Schilders, G.1
Van Dijk, E.2
Pruijn, G.J.M.3
-
63
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
doi:10.1016/S0092-8674(01)00578-5. PubMed: 11719186
-
Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R et al. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107: 451-464. doi:10.1016/S0092-8674(01)00578-5. PubMed: 11719186.
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
-
64
-
-
56849094282
-
A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing
-
doi:10.1016/j.molcel.2008.11.012. PubMed: 19061648
-
Wilmes GM, Bergkessel M, Bandyopadhyay S, Shales M, Braberg H et al. (2008) A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol Cell 32: 735-746. doi:10.1016/j.molcel.2008.11.012. PubMed: 19061648.
-
(2008)
Mol Cell
, vol.32
, pp. 735-746
-
-
Wilmes, G.M.1
Bergkessel, M.2
Bandyopadhyay, S.3
Shales, M.4
Braberg, H.5
|