-
3
-
-
1842687156
-
Toward a metabolic theory of ecology
-
Brown JH, Gillooly JF, Allen AP, Savage VM, West GB (2004) Toward a metabolic theory of ecology. Ecology 85(7):1771–1789.
-
(2004)
Ecology
, vol.85
, Issue.7
, pp. 1771-1789
-
-
Brown, J.H.1
Gillooly, J.F.2
Allen, A.P.3
Savage, V.M.4
West, G.B.5
-
4
-
-
44449137093
-
The microbial engines that drive earth’s biogeochemical cycles
-
Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive earth’s biogeochemical cycles. Science 320(5879):1034–1039.
-
(2008)
Science
, vol.320
, Issue.5879
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
5
-
-
84873333102
-
The compositional and evolutionary logic of metabolism
-
Braakman R, Smith E (2013) The compositional and evolutionary logic of metabolism. Phys Biol 10(1):011001.
-
(2013)
Phys Biol
, vol.10
, Issue.1
, pp. 011001
-
-
Braakman, R.1
Smith, E.2
-
6
-
-
0024265562
-
A novel free-living prochlorophyte abundant in the oceanic euphotic zone
-
Chisholm SW, et al. (1988) A novel free-living prochlorophyte abundant in the oceanic euphotic zone. Nature 334:340–343.
-
(1988)
Nature
, vol.334
, pp. 340-343
-
-
Chisholm, S.W.1
-
7
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Hess W, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63(1):106–127.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, Issue.1
, pp. 106-127
-
-
Partensky, F.1
Hess, W.2
Vaulot, D.3
-
8
-
-
84879060146
-
Present and future global distributions of the marine cyanobacteria Prochlorococcus and Synechococcus
-
Flombaum P, et al. (2013) Present and future global distributions of the marine cyanobacteria Prochlorococcus and Synechococcus. Proc Natl Acad Sci USA 110(24):9824–9829.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.24
, pp. 9824-9829
-
-
Flombaum, P.1
-
9
-
-
66749151555
-
Ecological genomics of marine picocyanobacteria
-
Scanlan DJ, et al. (2009) Ecological genomics of marine picocyanobacteria. Microbiol Mol Biol Rev 73(2):249–299.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, Issue.2
, pp. 249-299
-
-
Scanlan, D.J.1
-
10
-
-
33645216333
-
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
-
Johnson ZI, et al. (2006) Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311(5768):1737–1740.
-
(2006)
Science
, vol.311
, Issue.5768
, pp. 1737-1740
-
-
Johnson, Z.I.1
-
11
-
-
33646551799
-
Oceanographic basis of the global surface distribution of Prochlorococcus ecotypes
-
Bouman HA, et al. (2006) Oceanographic basis of the global surface distribution of Prochlorococcus ecotypes. Science 312(5775):918–921.
-
(2006)
Science
, vol.312
, Issue.5775
, pp. 918-921
-
-
Bouman, H.A.1
-
12
-
-
77957000882
-
Temporal dynamics of Prochlorococcus ecotypes in the atlantic and pacific oceans
-
Malmstrom RR, et al. (2010) Temporal dynamics of Prochlorococcus ecotypes in the atlantic and pacific oceans. ISME J 4(10):1252–1264.
-
(2010)
ISME J
, vol.4
, Issue.10
, pp. 1252-1264
-
-
Malmstrom, R.R.1
-
13
-
-
0032482462
-
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
-
Moore LR, Rocap G, Chisholm SW (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393(6684):464–467.
-
(1998)
Nature
, vol.393
, Issue.6684
, pp. 464-467
-
-
Moore, L.R.1
Rocap, G.2
Chisholm, S.W.3
-
14
-
-
0033012306
-
Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern north atlantic ocean
-
West NJ, Scanlan DJ (1999) Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern north atlantic ocean. Appl Env Microbiol 65(6):2585–2591.
-
(1999)
Appl Env Microbiol
, vol.65
, Issue.6
, pp. 2585-2591
-
-
West, N.J.1
Scanlan, D.J.2
-
15
-
-
84861138834
-
The emergence and early evolution of biological carbon-fixation
-
Braakman R, Smith E (2012) The emergence and early evolution of biological carbon-fixation. PLoS Comput Biol 8(4):e1002455.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.4
-
-
Braakman, R.1
Smith, E.2
-
16
-
-
84895530472
-
Metabolic evolution of a deep-branching hyperther-mophilic chemoautotrophic bacterium
-
Braakman R, Smith E (2014) Metabolic evolution of a deep-branching hyperther-mophilic chemoautotrophic bacterium. PLoS One 9(2):e87950.
-
(2014)
PLoS One
, vol.9
, Issue.2
-
-
Braakman, R.1
Smith, E.2
-
18
-
-
37349069540
-
Function, structure, and evolution of the rubisco-like proteins and their rubisco homologs
-
Tabita FR, et al. (2007) Function, structure, and evolution of the rubisco-like proteins and their rubisco homologs. Microbiol Mol Biol Rev 71(4):576–599.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, Issue.4
, pp. 576-599
-
-
Tabita, F.R.1
-
19
-
-
84901209724
-
The distribution of polyhedral bacterial microcompartments suggests frequent horizontal transfer and operon reassembly
-
Abdul-Rahman F, Petit E, Blanchard JL (2013) The distribution of polyhedral bacterial microcompartments suggests frequent horizontal transfer and operon reassembly. J Phylogenetics Evol Biol 1(4):118.
-
(2013)
J Phylogenetics Evol Biol
, vol.1
, Issue.4
, pp. 118
-
-
Abdul-Rahman, F.1
Petit, E.2
Blanchard, J.L.3
-
20
-
-
83755181765
-
The tricarboxylic acid cycle in cyanobacteria
-
Zhang S, Bryant DA (2011) The tricarboxylic acid cycle in cyanobacteria. Science 334(6062):1551–1553.
-
(2011)
Science
, vol.334
, Issue.6062
, pp. 1551-1553
-
-
Zhang, S.1
Bryant, D.A.2
-
21
-
-
84966376785
-
The Entner–Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants
-
Chen X, et al. (2016) The Entner–Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants. Proc Natl Acad Sci USA 113(19):5441–5446.
-
(2016)
Proc Natl Acad Sci USA
, vol.113
, Issue.19
, pp. 5441-5446
-
-
Chen, X.1
-
22
-
-
0041386044
-
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
-
Dufresne A, et al. (2003) Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci USA 100(17):10020–10025.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.17
, pp. 10020-10025
-
-
Dufresne, A.1
-
23
-
-
55949125406
-
The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants
-
Eisenhut M, et al. (2008) The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc Natl Acad Sci USA 105(44):17199–17204.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.44
, pp. 17199-17204
-
-
Eisenhut, M.1
-
24
-
-
84922758236
-
The ecological significance of extracellular products of phytoplankton photosynthesis
-
Fogg GE (1983) The ecological significance of extracellular products of phytoplankton photosynthesis. Bot Mar 26(1):3–14.
-
(1983)
Bot Mar
, vol.26
, Issue.1
, pp. 3-14
-
-
Fogg, G.E.1
-
25
-
-
0016683208
-
The regulation of carbohydrate metabolism in Klebsiella aerogenes NCTC 418 organisms, growing in chemostat culture
-
Neijssel O, Tempest D (1975) The regulation of carbohydrate metabolism in Klebsiella aerogenes NCTC 418 organisms, growing in chemostat culture. Arch Microbiol 106(3):251–258.
-
(1975)
Arch Microbiol
, vol.106
, Issue.3
, pp. 251-258
-
-
Neijssel, O.1
Tempest, D.2
-
26
-
-
0028926047
-
Energetics of bacterial growth: Balance of anabolic and catabolic reactions
-
Russell JB, Cook GM (1995) Energetics of bacterial growth: Balance of anabolic and catabolic reactions. Microbiol Rev 59(1):48–62.
-
(1995)
Microbiol Rev
, vol.59
, Issue.1
, pp. 48-62
-
-
Russell, J.B.1
Cook, G.M.2
-
27
-
-
0035209302
-
Bacillus subtilis metabolism and energetics in carbon-limited and excess-carbon chemostat culture
-
Dauner M, Storni T, Sauer U (2001) Bacillus subtilis metabolism and energetics in carbon-limited and excess-carbon chemostat culture. J Bacteriol 183(24):7308–7317.
-
(2001)
J Bacteriol
, vol.183
, Issue.24
, pp. 7308-7317
-
-
Dauner, M.1
Storni, T.2
Sauer, U.3
-
28
-
-
33847785682
-
Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae
-
Vemuri G, Eiteman M, McEwen J, Olsson L, Nielsen J (2007) Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 104(7):2402–2407.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.7
, pp. 2402-2407
-
-
Vemuri, G.1
Eiteman, M.2
McEwen, J.3
Olsson, L.4
Nielsen, J.5
-
29
-
-
77955388615
-
Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria
-
McKinlay JB, Harwood CS (2010) Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria. Proc Natl Acad Sci USA 107(26):11669–11675.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.26
, pp. 11669-11675
-
-
McKinlay, J.B.1
Harwood, C.S.2
-
31
-
-
84908236616
-
2 fixation by surface Prochlorococcus in the Atlantic Ocean
-
2 fixation by surface Prochlorococcus in the Atlantic Ocean. ISME J 8(11):2280–2289.
-
(2014)
ISME J
, vol.8
, Issue.11
, pp. 2280-2289
-
-
Hartmann, M.1
-
32
-
-
0029109040
-
Comparative physiology of Synechococcus and Prochlorococcus: Influence of light and temperature on growth, pigments, fluorescence and absorptive properties
-
Moore LR, Goericke R, Chisholm SW (1995) Comparative physiology of Synechococcus and Prochlorococcus: Influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Mar Ecol Prog Ser 116(1):259–275.
-
(1995)
Mar Ecol Prog Ser
, vol.116
, Issue.1
, pp. 259-275
-
-
Moore, L.R.1
Goericke, R.2
Chisholm, S.W.3
-
33
-
-
39949085770
-
Alternative photosynthetic electron flow to oxygen in marine Synechococcus
-
Bailey S, et al. (2008) Alternative photosynthetic electron flow to oxygen in marine Synechococcus. Biochim Biophys Acta 1777(3):269–276.
-
(2008)
Biochim Biophys Acta
, vol.1777
, Issue.3
, pp. 269-276
-
-
Bailey, S.1
-
34
-
-
44949150927
-
A photosynthetic strategy for coping in a high-light, low-nutrient environment
-
Mackey KR, Paytan A, Grossman AR, Bailey S (2008) A photosynthetic strategy for coping in a high-light, low-nutrient environment. Limnol Oceanogr 53(3):900–913.
-
(2008)
Limnol Oceanogr
, vol.53
, Issue.3
, pp. 900-913
-
-
Mackey, K.R.1
Paytan, A.2
Grossman, A.R.3
Bailey, S.4
-
35
-
-
84872483268
-
Prochlorococcus and Synechococcus have evolved different adaptive mechanisms to cope with light and uv stress
-
Mella-Flores D, et al. (2012) Prochlorococcus and Synechococcus have evolved different adaptive mechanisms to cope with light and uv stress. Front Microbiol 3:285.
-
(2012)
Front Microbiol
, vol.3
, pp. 285
-
-
Mella-Flores, D.1
-
37
-
-
33644962099
-
Release of dissolved organic matter by Prochlorococcus
-
Bertlisson S, Berglund O, Pullin MJ, Chisholm SW (2005) Release of dissolved organic matter by Prochlorococcus. Vie et Milieu 55(3-4):225–232.
-
(2005)
Vie Et Milieu
, vol.55
, Issue.3-4
, pp. 225-232
-
-
Bertlisson, S.1
Berglund, O.2
Pullin, M.J.3
Chisholm, S.W.4
-
38
-
-
0000651747
-
Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat
-
Bateson MM, Ward DM (1988) Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat. Appl Environ Microbiol 54(7):1738–1743.
-
(1988)
Appl Environ Microbiol
, vol.54
, Issue.7
, pp. 1738-1743
-
-
Bateson, M.M.1
Ward, D.M.2
-
39
-
-
0030821294
-
Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by marine phytoplankton
-
Biddanda B, Benner R (1997) Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by marine phytoplankton. Limnol Oceanogr 42(3):506–518.
-
(1997)
Limnol Oceanogr
, vol.42
, Issue.3
, pp. 506-518
-
-
Biddanda, B.1
Benner, R.2
-
40
-
-
0028976515
-
Release of extracellular products by phytoplankton with special emphasis on polysaccharides
-
Myklestad SM (1995) Release of extracellular products by phytoplankton with special emphasis on polysaccharides. Sci Total Environ 165(1):155–164.
-
(1995)
Sci Total Environ
, vol.165
, Issue.1
, pp. 155-164
-
-
Myklestad, S.M.1
-
41
-
-
57249105424
-
‘Reverse ecology’ and the power of population genomics
-
Li YF, Costello JC, Holloway AK, Hahn MW (2008) ‘Reverse ecology’ and the power of population genomics. Evolution 62(12):2984–2994.
-
(2008)
Evolution
, vol.62
, Issue.12
, pp. 2984-2994
-
-
Li, Y.F.1
Costello, J.C.2
Holloway, A.K.3
Hahn, M.W.4
-
42
-
-
65249154859
-
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus
-
Zinser ER, et al. (2009) Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus. PLoS One 4(4):e5135.
-
(2009)
PLoS One
, vol.4
, Issue.4
-
-
Zinser, E.R.1
-
43
-
-
84865594221
-
Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle
-
Waldbauer JR, Rodrigue S, Coleman ML, Chisholm SW (2012) Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One 7(8):e43432.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Waldbauer, J.R.1
Rodrigue, S.2
Coleman, M.L.3
Chisholm, S.W.4
-
44
-
-
11144260296
-
The occurrence of rapidly reversible non-photochemical quenching of chlorophyll a fluorescence in cyanobacteria
-
Bailey S, Mann NH, Robinson C, Scanlan DJ (2005) The occurrence of rapidly reversible non-photochemical quenching of chlorophyll a fluorescence in cyanobacteria. FEBS Lett 579(1):275–280.
-
(2005)
FEBS Lett
, vol.579
, Issue.1
, pp. 275-280
-
-
Bailey, S.1
Mann, N.H.2
Robinson, C.3
Scanlan, D.J.4
-
45
-
-
79551686235
-
Distinct differences in photoaccli-mation potential between prokaryotic and eukaryotic oceanic phytoplankton
-
Kulk G, van de Poll WH, Visser RJ, Buma AG (2011) Distinct differences in photoaccli-mation potential between prokaryotic and eukaryotic oceanic phytoplankton. J Exp Mar Biol Ecol 398(1):63–72.
-
(2011)
J Exp Mar Biol Ecol
, vol.398
, Issue.1
, pp. 63-72
-
-
Kulk, G.1
Van De Poll, W.H.2
Visser, R.J.3
Buma, A.G.4
-
46
-
-
84989625514
-
Acclimation to spectral irradiance in algae
-
Falkowski PG, LaRoche J (1991) Acclimation to spectral irradiance in algae. J Phycol 27(1):8–14.
-
(1991)
J Phycol
, vol.27
, Issue.1
, pp. 8-14
-
-
Falkowski, P.G.1
LaRoche, J.2
-
47
-
-
13944253290
-
Towards an understanding of photosynthetic acclimation
-
Walters RG (2005) Towards an understanding of photosynthetic acclimation. J Exp Bot 56(411):435–447.
-
(2005)
J Exp Bot
, vol.56
, Issue.411
, pp. 435-447
-
-
Walters, R.G.1
-
48
-
-
33747160179
-
Social evolution theory for microorganisms
-
West SA, Griffin AS, Gardner A, Diggle SP (2006) Social evolution theory for microorganisms. Nat Rev Microbiol 4(8):597–607.
-
(2006)
Nat Rev Microbiol
, vol.4
, Issue.8
, pp. 597-607
-
-
West, S.A.1
Griffin, A.S.2
Gardner, A.3
Diggle, S.P.4
-
49
-
-
0017148202
-
The role of energy-spilling reactions in the growth of Klebsiella aerogenes NCTC 418 in aerobic chemostat culture
-
Neijssel O, Tempest D (1976) The role of energy-spilling reactions in the growth of Klebsiella aerogenes NCTC 418 in aerobic chemostat culture. Arch Microbiol 110(2-3): 305–311.
-
(1976)
Arch Microbiol
, vol.110
, Issue.2-3
, pp. 305-311
-
-
Neijssel, O.1
Tempest, D.2
-
50
-
-
73149109962
-
Shifts in growth strategies reflect tradeoffs in cellular economics
-
Molenaar D, van Berlo R, de Ridder D, Teusink B (2009) Shifts in growth strategies reflect tradeoffs in cellular economics. Mol Syst Biol 5(1):323.
-
(2009)
Mol Syst Biol
, vol.5
, Issue.1
, pp. 323
-
-
Molenaar, D.1
Van Berlo, R.2
De Ridder, D.3
Teusink, B.4
-
51
-
-
84947583295
-
Overflow metabolism in Escherichia coli results from efficient proteome allocation
-
Basan M, et al. (2015) Overflow metabolism in Escherichia coli results from efficient proteome allocation. Nature 528(7580):99–104.
-
(2015)
Nature
, vol.528
, Issue.7580
, pp. 99-104
-
-
Basan, M.1
-
52
-
-
37749041470
-
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
-
Kettler GC, et al. (2007) Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet 3(12):e231.
-
(2007)
PLoS Genet
, vol.3
, Issue.12
-
-
Kettler, G.C.1
-
53
-
-
84862195254
-
Prochlorococcus: Advantages and limits of minimalism
-
Partensky F, Garczarek L (2010) Prochlorococcus: Advantages and limits of minimalism. Annu Rev Mar Sci 2:305–331.
-
(2010)
Annu Rev Mar Sci
, vol.2
, pp. 305-331
-
-
Partensky, F.1
Garczarek, L.2
-
54
-
-
84988159801
-
The pigments of Prochlorococcus marinus: The presence of divinylchlorophyll a and b in a marine procaryote
-
Goericke R, Repeta DJ (1992) The pigments of Prochlorococcus marinus: The presence of divinylchlorophyll a and b in a marine procaryote. Limnol Oceanogr 37(2):425–433.
-
(1992)
Limnol Oceanogr
, vol.37
, Issue.2
, pp. 425-433
-
-
Goericke, R.1
Repeta, D.J.2
-
55
-
-
0035846108
-
Oxyphotobacteria: Antenna ring around photosystem I
-
Bibby T, Nield J, Partensky F, Barber J (2001) Oxyphotobacteria: Antenna ring around photosystem I. Nature 413(6856):590–590.
-
(2001)
Nature
, vol.413
, Issue.6856
, pp. 590
-
-
Bibby, T.1
Nield, J.2
Partensky, F.3
Barber, J.4
-
56
-
-
0041363271
-
Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem
-
Bibby T, Mary I, Nield J, Partensky F, Barber J (2003) Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem. Nature 424(6952):1051–1054.
-
(2003)
Nature
, vol.424
, Issue.6952
, pp. 1051-1054
-
-
Bibby, T.1
Mary, I.2
Nield, J.3
Partensky, F.4
Barber, J.5
-
57
-
-
84922815142
-
The RUBISCO to photosystem II ratio limits the maximum photosynthetic rate in picocyanobacteria
-
Zorz JK, et al. (2015) The RUBISCO to photosystem II ratio limits the maximum photosynthetic rate in picocyanobacteria. Life (Basel) 5(1):403–417.
-
(2015)
Life (Basel)
, vol.5
, Issue.1
, pp. 403-417
-
-
Zorz, J.K.1
-
58
-
-
0027871758
-
Prochlorococcus and Synechococcus: A comparative study of their optical properties in relation to their size and pigmentation
-
Morel A, Ahn YH, Partensky F, Vaulot D, Claustre H (1993) Prochlorococcus and Synechococcus: A comparative study of their optical properties in relation to their size and pigmentation. J Mar Res 51(3):617–649.
-
(1993)
J Mar Res
, vol.51
, Issue.3
, pp. 617-649
-
-
Morel, A.1
Ahn, Y.H.2
Partensky, F.3
Vaulot, D.4
Claustre, H.5
-
59
-
-
85001716995
-
Direct single-cell biomass estimates for marine bacteria via Archimedes’ principle
-
Cermak N, et al. (2017) Direct single-cell biomass estimates for marine bacteria via Archimedes’ principle. ISME J 11(3):825–828.
-
(2017)
ISME J
, vol.11
, Issue.3
, pp. 825-828
-
-
Cermak, N.1
-
60
-
-
28044436397
-
Accelerated evolution associated with genome reduction in a free-living prokaryote
-
Dufresne A, Garczarek L, Partensky F (2005) Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol 6(2):R14.
-
(2005)
Genome Biol
, vol.6
, Issue.2
, pp. R14
-
-
Dufresne, A.1
Garczarek, L.2
Partensky, F.3
-
61
-
-
84355161780
-
The significance of nitrogen cost minimization in proteomes of marine microorganisms
-
Grzymski JJ, Dussaq AM (2012) The significance of nitrogen cost minimization in proteomes of marine microorganisms. ISME J 6(1):71–80.
-
(2012)
ISME J
, vol.6
, Issue.1
, pp. 71-80
-
-
Grzymski, J.J.1
Dussaq, A.M.2
-
62
-
-
33745025682
-
Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments
-
Van Mooy BA, Rocap G, Fredricks HF, Evans CT, Devol AH (2006) Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments. Proc Natl Acad Sci USA 103(23):8607–8612.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.23
, pp. 8607-8612
-
-
Van Mooy, B.A.1
Rocap, G.2
Fredricks, H.F.3
Evans, C.T.4
Devol, A.H.5
-
63
-
-
62149152391
-
Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity
-
Van Mooy BA, et al. (2009) Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity. Nature 458(7234):69–72.
-
(2009)
Nature
, vol.458
, Issue.7234
, pp. 69-72
-
-
Van Mooy, B.A.1
-
64
-
-
84883444382
-
Processes and patterns of oceanic nutrient limitation
-
Moore C, et al. (2013) Processes and patterns of oceanic nutrient limitation. Nat Geosci 6(9):701–710.
-
(2013)
Nat Geosci
, vol.6
, Issue.9
, pp. 701-710
-
-
Moore, C.1
-
65
-
-
0004276083
-
-
Thieme, Stuttgart, Germany
-
Lengeler JW, Drews G, Schlegel HG, eds (1999) Biology of the Prokaryotes (Thieme, Stuttgart, Germany).
-
(1999)
Biology of The Prokaryotes
-
-
Lengeler, J.W.1
Drews, G.2
Schlegel, H.G.3
-
66
-
-
0002047643
-
Influence of photorespiration on ATP/ADP ratios in the chloroplasts, mitochondria, and cytosol, studied by rapid fractionation of barley (Hordeum vulgare) protoplasts
-
Gardeström P, Wigge B (1988) Influence of photorespiration on ATP/ADP ratios in the chloroplasts, mitochondria, and cytosol, studied by rapid fractionation of barley (Hordeum vulgare) protoplasts. Plant Physiol 88(1):69–76.
-
(1988)
Plant Physiol
, vol.88
, Issue.1
, pp. 69-76
-
-
Gardeström, P.1
Wigge, B.2
-
67
-
-
78651453820
-
Light-driven changes in energy metabolism directly entrain the cyanobacterial circadian oscillator
-
Rust MJ, Golden SS, O’Shea EK (2011) Light-driven changes in energy metabolism directly entrain the cyanobacterial circadian oscillator. Science 331(6014):220–223.
-
(2011)
Science
, vol.331
, Issue.6014
, pp. 220-223
-
-
Rust, M.J.1
Golden, S.S.2
O’Shea, E.K.3
-
68
-
-
0025919354
-
Biochemical basis for whole-cell uptake kinetics: Specific affinity, oligotrophic capacity, and the meaning of the Michaelis constant
-
Button D (1991) Biochemical basis for whole-cell uptake kinetics: Specific affinity, oligotrophic capacity, and the meaning of the Michaelis constant. Appl Environ Microbiol 57(7):2033–2038.
-
(1991)
Appl Environ Microbiol
, vol.57
, Issue.7
, pp. 2033-2038
-
-
Button, D.1
-
69
-
-
0020696807
-
Physiological responses to nutrient limitation
-
Harder W, Dijkhuizen L (1983) Physiological responses to nutrient limitation. Ann Rev Microbiol 37(1):1–23.
-
(1983)
Ann Rev Microbiol
, vol.37
, Issue.1
, pp. 1-23
-
-
Harder, W.1
Dijkhuizen, L.2
-
70
-
-
0021796811
-
Bacterial ammonium transport
-
Kleiner D (1985) Bacterial ammonium transport. FEMS Microbiol Lett 32(2):87–100.
-
(1985)
FEMS Microbiol Lett
, vol.32
, Issue.2
, pp. 87-100
-
-
Kleiner, D.1
-
72
-
-
0000817765
-
Resource competition between plankton algae: An experimental and theoretical approach
-
Tilman D (1977) Resource competition between plankton algae: An experimental and theoretical approach. Ecology 58(2):338–348.
-
(1977)
Ecology
, vol.58
, Issue.2
, pp. 338-348
-
-
Tilman, D.1
-
73
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni SJ, et al. (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309(5738):1242–1245.
-
(2005)
Science
, vol.309
, Issue.5738
, pp. 1242-1245
-
-
Giovannoni, S.J.1
-
74
-
-
84878966835
-
Glycolytic strategy as a tradeoff between energy yield and protein cost
-
Flamholz A, Noor E, Bar-Even A, Liebermeister W, Milo R (2013) Glycolytic strategy as a tradeoff between energy yield and protein cost. Proc Natl Acad Sci USA 110(24):10039–10044.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.24
, pp. 10039-10044
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Liebermeister, W.4
Milo, R.5
-
77
-
-
84936805635
-
Backbones of evolutionary history test biodiversity theory for microbes
-
O’Dwyer JP, Kembel SW, Sharpton TJ (2015) Backbones of evolutionary history test biodiversity theory for microbes. Proc Natl Acad Sci USA 112(27):8356–8361.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.27
, pp. 8356-8361
-
-
O’Dwyer, J.P.1
Kembel, S.W.2
Sharpton, T.J.3
-
78
-
-
84899559579
-
Single-cell genomics reveals hundreds of coexisting subpopulations in wild
-
Kashtan N, et al. (2014) Single-cell genomics reveals hundreds of coexisting subpopulations in wild. Science 344(6182):416–420.
-
(2014)
Science
, vol.344
, Issue.6182
, pp. 416-420
-
-
Kashtan, N.1
-
80
-
-
20844439532
-
Seeds of diversity
-
Erwin DH (2005) Seeds of diversity. Science 308(5729):1752–1753.
-
(2005)
Science
, vol.308
, Issue.5729
, pp. 1752-1753
-
-
Erwin, D.H.1
-
81
-
-
77949849861
-
Dissolved organic matter in the ocean: A controversy stimulates new insights
-
Hansell DA, Carlson CA, Repeta DJ, Schlitzer R (2009) Dissolved organic matter in the ocean: A controversy stimulates new insights. Oceanography 22(4):202–211.
-
(2009)
Oceanography
, vol.22
, Issue.4
, pp. 202-211
-
-
Hansell, D.A.1
Carlson, C.A.2
Repeta, D.J.3
Schlitzer, R.4
-
82
-
-
79551615216
-
Saccharides enhance iron bioavailability to southern ocean phytoplankton
-
Hassler CS, Schoemann V, Nichols CM, Butler EC, Boyd PW (2011) Saccharides enhance iron bioavailability to southern ocean phytoplankton. Proc Natl Acad Sci USA 108(3):1076–1081.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.3
, pp. 1076-1081
-
-
Hassler, C.S.1
Schoemann, V.2
Nichols, C.M.3
Butler, E.C.4
Boyd, P.W.5
-
83
-
-
84908130089
-
Uptake mechanisms for inorganic iron and ferric citrate in Trichodesmium erythraeum IMS101
-
Roe KL, Barbeau KA (2014) Uptake mechanisms for inorganic iron and ferric citrate in Trichodesmium erythraeum IMS101. Metallomics 6(11):2042–2051.
-
(2014)
Metallomics
, vol.6
, Issue.11
, pp. 2042-2051
-
-
Roe, K.L.1
Barbeau, K.A.2
-
84
-
-
0028179028
-
Organisms as ecosystem engineers
-
Jones CG, Lawton JH, Shachak M (1994) Organisms as ecosystem engineers. Oikos 69(3):373–386.
-
(1994)
Oikos
, vol.69
, Issue.3
, pp. 373-386
-
-
Jones, C.G.1
Lawton, J.H.2
Shachak, M.3
-
85
-
-
0002027029
-
A new evolutionary law
-
Van Valen L (1973) A new evolutionary law. Evol Theory 1:1–30.
-
(1973)
Evol Theory
, vol.1
, pp. 1-30
-
-
Van Valen, L.1
-
86
-
-
0027873698
-
Seafood through time: Changes in biomass, energetics, and productivity in the marine ecosystem
-
Bambach RK (1993) Seafood through time: Changes in biomass, energetics, and productivity in the marine ecosystem. Paleobiology 19(03):372–397.
-
(1993)
Paleobiology
, vol.19
, Issue.3
, pp. 372-397
-
-
Bambach, R.K.1
-
87
-
-
0031442470
-
Interrelated influence of iron, light and cell size on marine phytoplankton growth
-
Sunda WG, Huntsman SA (1997) Interrelated influence of iron, light and cell size on marine phytoplankton growth. Nature 390(6658):389–392.
-
(1997)
Nature
, vol.390
, Issue.6658
, pp. 389-392
-
-
Sunda, W.G.1
Huntsman, S.A.2
-
88
-
-
84879932140
-
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
-
Swan BK, et al. (2013) Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci USA 110(28):11463–11468.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.28
, pp. 11463-11468
-
-
Swan, B.K.1
-
89
-
-
84946781193
-
Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency
-
Sebastián M, et al. (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. ISME J 10(4):968–978.
-
(2016)
ISME J
, vol.10
, Issue.4
, pp. 968-978
-
-
Sebastián, M.1
-
90
-
-
6044271639
-
Photosynthetic architecture differs in coastal and oceanic diatoms
-
Strzepek RF, Harrison PJ (2004) Photosynthetic architecture differs in coastal and oceanic diatoms. Nature 431(7009):689–692.
-
(2004)
Nature
, vol.431
, Issue.7009
, pp. 689-692
-
-
Strzepek, R.F.1
Harrison, P.J.2
-
91
-
-
45549109763
-
An original adaptation of photosynthesis in the marine green alga ostreococcus
-
Cardol P, et al. (2008) An original adaptation of photosynthesis in the marine green alga ostreococcus. Proc Natl Acad Sci USA 105(22):7881–7886.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.22
, pp. 7881-7886
-
-
Cardol, P.1
-
92
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béja O, et al. (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289(5486):1902–1906.
-
(2000)
Science
, vol.289
, Issue.5486
, pp. 1902-1906
-
-
Béja, O.1
-
93
-
-
17044402544
-
Alternative oxidase and plastoquinol terminal oxidase in marine prokaryotes of the Sargasso Sea
-
McDonald AE, Vanlerberghe GC (2005) Alternative oxidase and plastoquinol terminal oxidase in marine prokaryotes of the Sargasso Sea. Gene 349:15–24.
-
(2005)
Gene
, vol.349
, pp. 15-24
-
-
McDonald, A.E.1
Vanlerberghe, G.C.2
-
94
-
-
0032426261
-
Bacterial growth efficiency in natural aquatic systems
-
Del Giorgio PA, Cole JJ (1998) Bacterial growth efficiency in natural aquatic systems. Annu Rev Ecol Syst 29:503–541.
-
(1998)
Annu Rev Ecol Syst
, vol.29
, pp. 503-541
-
-
Del Giorgio, P.A.1
Cole, J.J.2
-
95
-
-
0037180794
-
SAR11 clade dominates ocean surface bacterioplankton communities
-
Morris RM, et al. (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420(6917):806–810.
-
(2002)
Nature
, vol.420
, Issue.6917
, pp. 806-810
-
-
Morris, R.M.1
-
96
-
-
84876460076
-
Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium
-
Carini P, Steindler L, Beszteri S, Giovannoni SJ (2013) Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium. ISME J 7(3):592–602.
-
(2013)
ISME J
, vol.7
, Issue.3
, pp. 592-602
-
-
Carini, P.1
Steindler, L.2
Beszteri, S.3
Giovannoni, S.J.4
-
97
-
-
77649128177
-
The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
-
Schwalbach M, Tripp H, Steindler L, Smith D, Giovannoni S (2010) The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ Microbiol 12(2):490–500.
-
(2010)
Environ Microbiol
, vol.12
, Issue.2
, pp. 490-500
-
-
Schwalbach, M.1
Tripp, H.2
Steindler, L.3
Smith, D.4
Giovannoni, S.5
-
98
-
-
84954485294
-
Tuning fresh: Radiation through rewiring of central metabolism in streamlined bacteria
-
Eiler A, et al. (2016) Tuning fresh: Radiation through rewiring of central metabolism in streamlined bacteria. ISME J 10(8):1902–1914.
-
(2016)
ISME J
, vol.10
, Issue.8
, pp. 1902-1914
-
-
Eiler, A.1
-
99
-
-
84864250059
-
Global biogeography of SAR11 marine bacteria
-
Brown MV, et al. (2012) Global biogeography of SAR11 marine bacteria. Mol Syst Biol 8(1):595.
-
(2012)
Mol Syst Biol
, vol.8
, Issue.1
, pp. 595
-
-
Brown, M.V.1
-
100
-
-
84880919986
-
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
-
Vergin KL, et al. (2013) High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. ISME J 7(7):1322–1332.
-
(2013)
ISME J
, vol.7
, Issue.7
, pp. 1322-1332
-
-
Vergin, K.L.1
-
101
-
-
0344443759
-
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
-
Fischer E, Sauer U (2003) A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J Biol Chem 278(47):46446–46451.
-
(2003)
J Biol Chem
, vol.278
, Issue.47
, pp. 46446-46451
-
-
Fischer, E.1
Sauer, U.2
-
102
-
-
0037388447
-
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
-
Liu Y, et al. (2003) Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci USA 100(7):4191–4196.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.7
, pp. 4191-4196
-
-
Liu, Y.1
-
103
-
-
79960933284
-
13c metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation
-
Beste DJ, et al. (2011) 13c metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLoS Pathog 7(7):e1002091.
-
(2011)
PLoS Pathog
, vol.7
, Issue.7
-
-
Beste, D.J.1
-
104
-
-
0001054387
-
Photochemical formation of glyoxylic and pyruvic acids in seawater
-
Kieber DJ, Mopper K (1987) Photochemical formation of glyoxylic and pyruvic acids in seawater. Marine Chem 21(2):135–149.
-
(1987)
Marine Chem
, vol.21
, Issue.2
, pp. 135-149
-
-
Kieber, D.J.1
Mopper, K.2
-
105
-
-
0001585489
-
Diel variability of glycolate in the eastern tropical Atlantic Ocean
-
Leboulanger C, Oriol L, Jupin H, Desolas-gros C (1997) Diel variability of glycolate in the eastern tropical Atlantic Ocean. Deep Sea Res Oceanogr Res Paper 44(12):2131–2139.
-
(1997)
Deep Sea Res Oceanogr Res Paper
, vol.44
, Issue.12
, pp. 2131-2139
-
-
Leboulanger, C.1
Oriol, L.2
Jupin, H.3
Desolas-Gros, C.4
-
106
-
-
40049112799
-
Distribution of hydrogen peroxide in the northwest Pacific Ocean
-
Yuan J, Shiller AM (2005) Distribution of hydrogen peroxide in the northwest Pacific Ocean. Geochem Geophys Geosyst 6(9):Q09M02.
-
(2005)
Geochem Geophys Geosyst
, vol.6
, Issue.9
, pp. Q09M02
-
-
Yuan, J.1
Shiller, A.M.2
-
107
-
-
47749145412
-
Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by ‘helper’ heterotrophic bacteria
-
Morris JJ, Kirkegaard R, Szul MJ, Johnson ZI, Zinser ER (2008) Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by ‘helper’ heterotrophic bacteria. Appl Environ Microbiol 74(14):4530–4534.
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.14
, pp. 4530-4534
-
-
Morris, J.J.1
Kirkegaard, R.2
Szul, M.J.3
Johnson, Z.I.4
Zinser, E.R.5
-
108
-
-
80052318679
-
Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean’s surface
-
Morris JJ, Johnson ZI, Szul MJ, Keller M, Zinser ER (2011) Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean’s surface. PLoS One 6(2):e16805.
-
(2011)
PLoS One
, vol.6
, Issue.2
-
-
Morris, J.J.1
Johnson, Z.I.2
Szul, M.J.3
Keller, M.4
Zinser, E.R.5
-
109
-
-
84860511582
-
The black queen hypothesis: Evolution of dependencies through adaptive gene loss
-
Morris JJ, Lenski RE, Zinser ER (2012) The black queen hypothesis: Evolution of dependencies through adaptive gene loss. MBio 3(2):e00036–e00012.
-
(2012)
MBio
, vol.3
, Issue.2
, pp. e00036-e100012
-
-
Morris, J.J.1
Lenski, R.E.2
Zinser, E.R.3
-
110
-
-
0017667182
-
The hypercycle. A principle of natural self-organization
-
Eigen M, Schuster P (1977) The hypercycle. A principle of natural self-organization. Naturwissenschaften 64(11):541–565.
-
(1977)
Naturwissenschaften
, vol.64
, Issue.11
, pp. 541-565
-
-
Eigen, M.1
Schuster, P.2
-
111
-
-
0032494283
-
Interdependence between chloroplasts and mitochondria in the light and the dark
-
Hoefnagel MH, Atkin OK, Wiskich JT (1998) Interdependence between chloroplasts and mitochondria in the light and the dark. Biochim Biophys Acta 1366(3):235–255.
-
(1998)
Biochim Biophys Acta
, vol.1366
, Issue.3
, pp. 235-255
-
-
Hoefnagel, M.H.1
Atkin, O.K.2
Wiskich, J.T.3
-
112
-
-
0344064882
-
Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation
-
Raghavendra AS, Padmasree K (2003) Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation. Trends Plant Sci 8(11): 546–553.
-
(2003)
Trends Plant Sci
, vol.8
, Issue.11
, pp. 546-553
-
-
Raghavendra, A.S.1
Padmasree, K.2
-
113
-
-
33847613456
-
Mitochondrial redox biology and homeostasis in plants
-
Noctor G, De Paepe R, Foyer CH (2007) Mitochondrial redox biology and homeostasis in plants. Trends Plant Sci 12(3):125–134.
-
(2007)
Trends Plant Sci
, vol.12
, Issue.3
, pp. 125-134
-
-
Noctor, G.1
De Paepe, R.2
Foyer, C.H.3
-
114
-
-
77953981581
-
Complete genome sequence of ‘Candidatus Puniceispirillum mar-inum’ IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria
-
Oh HM, et al. (2010) Complete genome sequence of ‘Candidatus Puniceispirillum mar-inum’ IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria. J Bacteriol 192(12):3240–3241.
-
(2010)
J Bacteriol
, vol.192
, Issue.12
, pp. 3240-3241
-
-
Oh, H.M.1
-
115
-
-
84863155147
-
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine alphaproteobacteria
-
Grote J, et al. (2011) Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine alphaproteobacteria. Stand Genomic Sci 5(3):269–278.
-
(2011)
Stand Genomic Sci
, vol.5
, Issue.3
, pp. 269-278
-
-
Grote, J.1
-
116
-
-
84861342496
-
Genomic insights to sar86, an abundant and uncultivated marine bacterial lineage
-
Dupont CL, et al. (2012) Genomic insights to sar86, an abundant and uncultivated marine bacterial lineage. ISME J 6(6):1186–1199.
-
(2012)
ISME J
, vol.6
, Issue.6
, pp. 1186-1199
-
-
Dupont, C.L.1
-
117
-
-
70349472694
-
Seasonality and vertical structure of microbial communities in an ocean gyre
-
Treusch AH, et al. (2009) Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J 3(10):1148–1163.
-
(2009)
ISME J
, vol.3
, Issue.10
, pp. 1148-1163
-
-
Treusch, A.H.1
-
118
-
-
84988044805
-
The energetics of genome complexity
-
Lane N, Martin W (2010) The energetics of genome complexity. Nature 467(7318):929–934.
-
(2010)
Nature
, vol.467
, Issue.7318
, pp. 929-934
-
-
Lane, N.1
Martin, W.2
-
119
-
-
4444252543
-
Universality in intermediary metabolism
-
Smith E, Morowitz HJ (2004) Universality in intermediary metabolism. Proc Natl Acad Sci USA 101(36):13168–13173.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.36
, pp. 13168-13173
-
-
Smith, E.1
Morowitz, H.J.2
-
120
-
-
0027009337
-
Carbon isotope evidence for the stepwise oxidation of the proterozoic environment
-
Des Marais DJ, Strauss H, Summons RE, Hayes J (1992) Carbon isotope evidence for the stepwise oxidation of the proterozoic environment. Nature 359:605–609.
-
(1992)
Nature
, vol.359
, pp. 605-609
-
-
Des Marais, D.J.1
Strauss, H.2
Summons, R.E.3
Hayes, J.4
-
121
-
-
84944463863
-
A statistical analysis of the carbon isotope record from the archean to phanerozoic and implications for the rise of oxygen
-
Krissansen-Totton J, Buick R, Catling DC (2015) A statistical analysis of the carbon isotope record from the archean to phanerozoic and implications for the rise of oxygen. Am J Sci 315(4):275–316.
-
(2015)
Am J Sci
, vol.315
, Issue.4
, pp. 275-316
-
-
Krissansen-Totton, J.1
Buick, R.2
Catling, D.C.3
-
122
-
-
33747790905
-
The oxygenation of the atmosphere and oceans
-
Holland HD (2006) The oxygenation of the atmosphere and oceans. Philos Trans R Soc Lond B Biol Sci 361(1470):903–915.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, Issue.1470
, pp. 903-915
-
-
Holland, H.D.1
-
123
-
-
84894261996
-
The rise of oxygen in earth’s early ocean and atmosphere
-
Lyons TW, Reinhard CT, Planavsky NJ (2014) The rise of oxygen in earth’s early ocean and atmosphere. Nature 506(7488):307–315.
-
(2014)
Nature
, vol.506
, Issue.7488
, pp. 307-315
-
-
Lyons, T.W.1
Reinhard, C.T.2
Planavsky, N.J.3
-
124
-
-
84896548144
-
A neoproterozoic transition in the marine nitrogen cycle
-
Sánchez-Baracaldo P, Ridgwell A, Raven JA (2014) A neoproterozoic transition in the marine nitrogen cycle. Curr Biol 24(6):652–657.
-
(2014)
Curr Biol
, vol.24
, Issue.6
, pp. 652-657
-
-
Sánchez-Baracaldo, P.1
Ridgwell, A.2
Raven, J.A.3
-
125
-
-
84949024120
-
Origin of marine planktonic cyanobacteria
-
Sánchez-Baracaldo P (2015) Origin of marine planktonic cyanobacteria. Sci Rep 5:17418.
-
(2015)
Sci Rep
, vol.5
, pp. 17418
-
-
Sánchez-Baracaldo, P.1
-
126
-
-
0002929079
-
Late proterozoic low-latitude global glaciation: The snowball earth
-
eds Schopf JW, Klein C, Des Marais D (Cambridge Univ Press, Cambridge, UK)
-
Kirschvink JL (1992) Late proterozoic low-latitude global glaciation: The snowball earth. The Proterozoic Biosphere: A Multidisciplinary Study, eds Schopf JW, Klein C, Des Marais D (Cambridge Univ Press, Cambridge, UK), pp 51–52.
-
(1992)
The Proterozoic Biosphere: A Multidisciplinary Study
, pp. 51-52
-
-
Kirschvink, J.L.1
-
127
-
-
0032575722
-
A neoproterozoic snowball earth
-
Hoffman PF, Kaufman AJ, Halverson GP, Schrag DP (1998) A neoproterozoic snowball earth. Science 281(5381):1342–1346.
-
(1998)
Science
, vol.281
, Issue.5381
, pp. 1342-1346
-
-
Hoffman, P.F.1
Kaufman, A.J.2
Halverson, G.P.3
Schrag, D.P.4
-
128
-
-
0022554928
-
Secular variation in carbon isotope ratios from upper proterozoic successions of Svalbard and East Greenland
-
Knoll A, Hayes J, Kaufman A, Swett K, Lambert I (1986) Secular variation in carbon isotope ratios from upper proterozoic successions of Svalbard and East Greenland. Nature 321(6073):832–838.
-
(1986)
Nature
, vol.321
, Issue.6073
, pp. 832-838
-
-
Knoll, A.1
Hayes, J.2
Kaufman, A.3
Swett, K.4
Lambert, I.5
-
130
-
-
79955571642
-
Enigmatic origin of the largest-known carbon isotope excursion in earth’s history
-
Grotzinger JP, Fike DA, Fischer WW (2011) Enigmatic origin of the largest-known carbon isotope excursion in earth’s history. Nat Geosci 4(5):285–292.
-
(2011)
Nat Geosci
, vol.4
, Issue.5
, pp. 285-292
-
-
Grotzinger, J.P.1
Fike, D.A.2
Fischer, W.W.3
-
131
-
-
33845640434
-
Oxidation of the ediacaran ocean
-
Fike D, Grotzinger J, Pratt L, Summons R (2006) Oxidation of the ediacaran ocean. Nature 444(7120):744–747.
-
(2006)
Nature
, vol.444
, Issue.7120
, pp. 744-747
-
-
Fike, D.1
Grotzinger, J.2
Pratt, L.3
Summons, R.4
-
132
-
-
84855243439
-
The neoproterozoic oxygenation event: Environmental perturbations and biogeochemical cycling
-
Och LM, Shields-Zhou GA (2012) The neoproterozoic oxygenation event: Environmental perturbations and biogeochemical cycling. Earth Sci Rev 110(1):26–57.
-
(2012)
Earth Sci Rev
, vol.110
, Issue.1
, pp. 26-57
-
-
Och, L.M.1
Shields-Zhou, G.A.2
-
133
-
-
84937829174
-
Statistical analysis of iron geochemical data suggests limited late proterozoic oxygenation
-
Sperling EA, et al. (2015) Statistical analysis of iron geochemical data suggests limited late proterozoic oxygenation. Nature 523(7561):451–454.
-
(2015)
Nature
, vol.523
, Issue.7561
, pp. 451-454
-
-
Sperling, E.A.1
-
134
-
-
0032480974
-
A new model for proterozoic ocean chemistry
-
Canfield D (1998) A new model for proterozoic ocean chemistry. Nature 396(6710):450–453.
-
(1998)
Nature
, vol.396
, Issue.6710
, pp. 450-453
-
-
Canfield, D.1
-
135
-
-
49649090355
-
Ferruginous conditions dominated later neoproterozoic deep-water chemistry
-
Canfield DE, et al. (2008) Ferruginous conditions dominated later neoproterozoic deep-water chemistry. Science 321(5891):949–952.
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 949-952
-
-
Canfield, D.E.1
-
136
-
-
80053132164
-
Widespread iron-rich conditions in the mid-Proterozoic ocean
-
Planavsky NJ, et al. (2011) Widespread iron-rich conditions in the mid-Proterozoic ocean. Nature 477(7365):448–451.
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 448-451
-
-
Planavsky, N.J.1
-
137
-
-
84875871658
-
Proterozoic ocean redox and biogeochemical stasis
-
Reinhard CT, et al. (2013) Proterozoic ocean redox and biogeochemical stasis. Proc Natl Acad Sci USA 110(14):5357–5362.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.14
, pp. 5357-5362
-
-
Reinhard, C.T.1
-
138
-
-
0037119593
-
Proterozoic ocean chemistry and evolution: A bioinorganic bridge?
-
Anbar AD, Knoll A (2002) Proterozoic ocean chemistry and evolution: A bioinorganic bridge? Science 297(5584):1137–1142.
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1137-1142
-
-
Anbar, A.D.1
Knoll, A.2
-
139
-
-
32644444040
-
The co-evolution of the nitrogen, carbon and oxygen cycles in the Proterozoic ocean
-
Fennel K, Follows M, Falkowski PG (2005) The co-evolution of the nitrogen, carbon and oxygen cycles in the Proterozoic ocean. Am J Sci 305(6-8):526–545.
-
(2005)
Am J Sci
, vol.305
, Issue.6-8
, pp. 526-545
-
-
Fennel, K.1
Follows, M.2
Falkowski, P.G.3
-
140
-
-
85016020685
-
Evolution of the global phosphorus cycle
-
Reinhard CT, et al. (2017) Evolution of the global phosphorus cycle. Nature 541(7637):386–389.
-
(2017)
Nature
, vol.541
, Issue.7637
, pp. 386-389
-
-
Reinhard, C.T.1
-
141
-
-
84986612884
-
The role of microbial electron transfer in the coevolution of the biosphere and geosphere
-
Jelen BI, Giovannelli D, Falkowski PG (2016) The role of microbial electron transfer in the coevolution of the biosphere and geosphere. Ann Rev Microbiol 70: 45–62.
-
(2016)
Ann Rev Microbiol
, vol.70
, pp. 45-62
-
-
Jelen, B.I.1
Giovannelli, D.2
Falkowski, P.G.3
-
142
-
-
84995611295
-
Trace elements at the intersection of marine biological and geochemical evolution
-
Robbins LJ, et al. (2016) Trace elements at the intersection of marine biological and geochemical evolution. Earth Sci Rev 163:323–348.
-
(2016)
Earth Sci Rev
, vol.163
, pp. 323-348
-
-
Robbins, L.J.1
-
143
-
-
84872348968
-
The organic complexation of iron in the marine environment: A review
-
Gledhill M, Buck KN (2012) The organic complexation of iron in the marine environment: A review. Front Microbiol 3:69.
-
(2012)
Front Microbiol
, vol.3
, pp. 69
-
-
Gledhill, M.1
Buck, K.N.2
-
144
-
-
0033616659
-
Biological impact on mineral dissolution: Application of the lichen model to understanding mineral weathering in the rhizosphere
-
Banfield JF, Barker WW, Welch SA, Taunton A (1999) Biological impact on mineral dissolution: Application of the lichen model to understanding mineral weathering in the rhizosphere. Proc Natl Acad Sci USA 96(7):3404–3411.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.7
, pp. 3404-3411
-
-
Banfield, J.F.1
Barker, W.W.2
Welch, S.A.3
Taunton, A.4
-
145
-
-
20144386764
-
Global iron connections between desert dust, ocean biogeo-chemistry, and climate
-
Jickells T, et al. (2005) Global iron connections between desert dust, ocean biogeo-chemistry, and climate. Science 308(5718):67–71.
-
(2005)
Science
, vol.308
, Issue.5718
, pp. 67-71
-
-
Jickells, T.1
-
146
-
-
0033806499
-
The biogeochemical cycling of phosphorus in marine systems
-
Benitez-Nelson CR (2000) The biogeochemical cycling of phosphorus in marine systems. Earth Sci Rev 51(1):109–135.
-
(2000)
Earth Sci Rev
, vol.51
, Issue.1
, pp. 109-135
-
-
Benitez-Nelson, C.R.1
-
147
-
-
0035781897
-
Function and mechanism of organic anion exudation from plant roots
-
Ryan P, Delhaize E, Jones D (2001) Function and mechanism of organic anion exudation from plant roots. Ann Rev Plant Biol 52(1):527–560.
-
(2001)
Ann Rev Plant Biol
, vol.52
, Issue.1
, pp. 527-560
-
-
Ryan, P.1
Delhaize, E.2
Jones, D.3
-
148
-
-
0024856908
-
A new model for atmospheric oxygen over phanerozoic time
-
Berner RA, Canfield DE, et al. (1989) A new model for atmospheric oxygen over phanerozoic time. Am J Sci 289(4):333–361.
-
(1989)
Am J Sci
, vol.289
, Issue.4
, pp. 333-361
-
-
Berner, R.A.1
Canfield, D.E.2
-
149
-
-
0030953959
-
2
-
2. Science 276(5312):544–546.
-
(1997)
Science
, vol.276
, Issue.5312
, pp. 544-546
-
-
Berner, R.A.1
-
150
-
-
84863418594
-
First plants cooled the ordovician
-
Lenton TM, Crouch M, Johnson M, Pires N, Dolan L (2012) First plants cooled the ordovician. Nat Geosci 5(2):86–89.
-
(2012)
Nat Geosci
, vol.5
, Issue.2
, pp. 86-89
-
-
Lenton, T.M.1
Crouch, M.2
Johnson, M.3
Pires, N.4
Dolan, L.5
-
151
-
-
1942469414
-
A molecular timeline for the origin of photosynthetic eukaryotes
-
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D (2004) A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol 21(5):809–818.
-
(2004)
Mol Biol Evol
, vol.21
, Issue.5
, pp. 809-818
-
-
Yoon, H.S.1
Hackett, J.D.2
Ciniglia, C.3
Pinto, G.4
Bhattacharya, D.5
-
152
-
-
7444237566
-
The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
-
Douzery EJ, Snell EA, Bapteste E, Delsuc F, Philippe H (2004) The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils? Proc Natl Acad Sci USA 101(43):15386–15391.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.43
, pp. 15386-15391
-
-
Douzery, E.J.1
Snell, E.A.2
Bapteste, E.3
Delsuc, F.4
Philippe, H.5
-
153
-
-
80052019696
-
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
-
Parfrey LW, Lahr DJ, Knoll AH, Katz LA (2011) Estimating the timing of early eukaryotic diversification with multigene molecular clocks. Proc Natl Acad Sci USA 108(33):13624–13629.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.33
, pp. 13624-13629
-
-
Parfrey, L.W.1
Lahr, D.J.2
Knoll, A.H.3
Katz, L.A.4
-
154
-
-
84880685461
-
Primary endosymbiosis events date to the later proterozoic with cross-calibrated phylogenetic dating of duplicated atpase proteins
-
Shih PM, Matzke NJ (2013) Primary endosymbiosis events date to the later proterozoic with cross-calibrated phylogenetic dating of duplicated atpase proteins. Proc Natl Acad Sci USA 110(30):12355–12360.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.30
, pp. 12355-12360
-
-
Shih, P.M.1
Matzke, N.J.2
-
155
-
-
33747765539
-
Eukaryotic organisms in proterozoic oceans
-
Knoll AH, Javaux EJ, Hewitt D, Cohen P (2006) Eukaryotic organisms in proterozoic oceans. Philos Trans R Soc Lond B Biol Sci 361(1470):1023–1038.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, Issue.1470
, pp. 1023-1038
-
-
Knoll, A.H.1
Javaux, E.J.2
Hewitt, D.3
Cohen, P.4
-
156
-
-
79960068536
-
Early eukaryotes in Precambrian oceans
-
eds Gargaud M, Lopez-Garcia P, Martin H (Cambridge Univ Press, Cambridge, UK)
-
Javaux E (2011) Early eukaryotes in Precambrian oceans. Origins and Evolution of Life: An Astrobiological Perspective, eds Gargaud M, Lopez-Garcia P, Martin H (Cambridge Univ Press, Cambridge, UK), pp 414–449.
-
(2011)
Origins and Evolution of Life: An Astrobiological Perspective
, pp. 414-449
-
-
Javaux, E.1
-
157
-
-
0029021659
-
Terminal Proterozoic reorganization of biogeochemical cycles
-
Logan GA, Hayes JM, Hieshima GB, Summons RE (1995) Terminal Proterozoic reorganization of biogeochemical cycles. Nature 376(6535):53–56.
-
(1995)
Nature
, vol.376
, Issue.6535
, pp. 53-56
-
-
Logan, G.A.1
Hayes, J.M.2
Hieshima, G.B.3
Summons, R.E.4
-
158
-
-
84897128982
-
Co-evolution of eukaryotes and ocean oxygenation in the Neoproterozoic era
-
Lenton TM, Boyle RA, Poulton SW, Shields-Zhou GA, Butterfield NJ (2014) Co-evolution of eukaryotes and ocean oxygenation in the Neoproterozoic era. Nat Geosci 7(4):256–265.
-
(2014)
Nat Geosci
, vol.7
, Issue.4
, pp. 256-265
-
-
Lenton, T.M.1
Boyle, R.A.2
Poulton, S.W.3
Shields-Zhou, G.A.4
Butterfield, N.J.5
-
160
-
-
84928642948
-
Carbon and other biogeochemical cycles
-
eds Stocker T, et al. (Cambridge Univ Press, Cambridge, UK)
-
Ciais P, et al. (2013) Carbon and other biogeochemical cycles. Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, eds Stocker T, et al. (Cambridge Univ Press, Cambridge, UK), pp 465–570.
-
(2013)
Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to The Fifth Assessment Report of The Intergovernmental Panel on Climate Change
, pp. 465-570
-
-
Ciais, P.1
-
161
-
-
84872589843
-
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
-
Shih PM, et al. (2013) Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci USA 110(3):1053–1058.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.3
, pp. 1053-1058
-
-
Shih, P.M.1
-
162
-
-
84927076433
-
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
-
Biller SJ, et al. (2014) Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci Data 1:140034.
-
(2014)
Sci Data
, vol.1
, pp. 140034
-
-
Biller, S.J.1
-
163
-
-
74049108922
-
Blast+: Architecture and applications
-
Camacho C, et al. (2009) Blast+: Architecture and applications. BMC Bioinformatics 10:421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
|