Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 17, 2003, Pages 10020-10025

  Dufresne, Alexis ^a   Salanoubat, Marcel ^b   Partensky, Frédéric ^a   Artiguenave, François ^b   Axmann, Ilka M ^c   Barbe, Valérie ^b   Duprat, Simone ^b   Galperin, Michael Y ^d   Koonin, Eugene V ^d   Le Gall, Florence ^a   Makarova, Kira S ^d   Ostrowski, Martin ^e   Oztas, Sophie ^b   Robert, Catherine ^b   Rogozin, Igor B ^d   Scanlan, David J ^e   De Marsac, Nicole Tandeau ^f   Weissenbach, Jean ^b   Wincker, Patrick ^b   Wolf, Yuri I ^d   Hess, Wolfgang R ^c,g   more..

^a STATION BIOLOGIQUE   (France)

^b CNRS   (France)

^c HUMBOLDT UNIVERSITY   (Germany)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

^e UNIVERSITY OF WARWICK   (United Kingdom)

^f INSTITUT PASTEUR   (France)

^g Ocean Genome Legacy   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BIOSYNTHESIS; CELL WALL; CONTROLLED STUDY; DNA REPAIR; GENE SEQUENCE; GENETIC CODE; GENETIC COMPLEMENTATION; GENETIC TRANSCRIPTION; GENOTYPE; NONHUMAN; NUCLEOTIDE METABOLISM; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PHOTOSYNTHESIS; PHOTOTAXIS; PRIORITY JOURNAL; PROCHLOROCOCCUS; PROCHLOROCOCCUS MARINUS; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STRAIN DIFFERENCE; STRESS;

ADAPTATION, PHYSIOLOGICAL; BASE COMPOSITION; CELL WALL; CHLOROPHYLL; CITRIC ACID CYCLE; CYANOBACTERIA; DNA REPAIR; DNA, BACTERIAL; GENE REARRANGEMENT; GENOME, BACTERIAL; MARINE BIOLOGY; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; OCEANS AND SEAS; OPEN READING FRAMES; PHOTOSYNTHESIS; PHYTOPLANKTON; SIGNAL TRANSDUCTION;

BACTERIA (MICROORGANISMS); CYANOBACTERIA; NEGIBACTERIA; PROCHLOROCOCCUS MARINUS; PROKARYOTA;

EID: 0041386044     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1733211100     Document Type: Article

References (54)

1. Chisholm, S. W., Frankel, S. L., Goericke, R., Olson, R. J., Palenik, B., Waterbury, J. B., West-Johnsrud, L. & Zettler, E. R. (1992) Arch. Microbiol. 157, 297-300.
2. Partensky, F., Hess, W. R. & Vaulot, D. (1999) Microbiol. Mol. Biol. Rev. 63, 106-127.
3. Goericke, R. & Repeta, D. J. (1992) Limnol. Oceanogr. 37, 425-433.
4. LaRoche, J., van der Staay, G. W., Partensky, F., Ducret, A., Aebersold, R., Li, R., Golden, S. S., Hiller, R. G., Wrench, P. M., Larkum, A. W. et al. (1996) Proc. Natl. Acad. Sci. USA 93, 15244-15248.
5. Moore, L. R. & Chisholm, S. W. (1999) Limnol. Oceanogr. 44, 628-638.
6. Rocap, G., Larimer, F. W., Lamerdin, J., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M., Hauser, L., Hess, W. R., et al. (2003) Nature. 10.1038/nature01947.
7. Kaneko, T., Nakamura, Y., Wolk, C. P., Kuritz, T., Sasamoto, S., Watanabe, A., Iriguchi, M., Ishikawa, A., Kawashima, K., Kimura, T. et al. (2001) DNA Res. 8, 205-213.
8. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S. et al. (1996) DNA Res. 3, 109-136.
9. Nakamura, Y., Kaneko, T., Sato, S., Ikeuchi, M., Katoh, H., Sasamoto, S., Watanabe, A., Iriguchi, M., Kawashima, K., Kimura, T. et al. (2002) DNA Res. 9, 123-130.
10. Artiguenave, F., Wincker, P., Brottier, P., Duprat, S., Jovelin, F., Scarpelli, C., Verdier, J., Vico, V., Weissenbach, J. & Saurin, W. (2000) FEBS Lett. 487, 13-16.
11. Strehl, B., Holtzendorff, J., Partensky, F. & Hess, W. R. (1999) FEMS Microbiol. Lett. 181, 261-266.
12. Delcher, A. L., Harmon, D., Kasif, S., White, O. & Salzberg, S. L. (1999) Nucleic Acids Res. 27, 4636-4641.
13. Besemer, J., Lomsadze, A. & Borodovsky, M. (2001) Nucleic Acids Res. 29, 2607-2618.
14. Badger, J. H. & Olsen, G. J. (1999) Mol. Biol. Evol. 16, 512-524.
15. Lowe, T. M. & Eddy, S. R. (1997) Nucleic Acids Res. 25, 955-964.
16. Vogel, J., Axmann, I. M., Herzel, H. & Hess, W. R. (2003) Nucleic Acids Res. 31, 2890-2899.
17. Tatusov, R. L., Galperin, M. Y., Natale, D. A. & Koonin, E. V. (2000) Nucleic Acids Res. 28, 33-36.
18. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zheng, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
19. Koonin, E. V. & Galperin, M. Y. (2002) Sequence-Evolution-Function: Computational Approaches in Comparative Genomics (Kluwer, Boston).
20. Lespinet, O., Wolf, Y. I., Koonin, E. V. & Aravind, L. (2002) Genome Res. 12, 1048-1059.
21. Liu, Y. & Tsinoremas, N. F. (1996) Gene 172, 105-109.
22. Bhaya, D., Dufresne, A., Vaulot, D. & Grossman, A. (2002) FEMS Microbiol. Lett. 215, 209-219.
23. Imamura, S., Yoshihara, S., Nakano, S., Shiozaki, N., Yamada, A., Tanaka, K., Takahashi, H., Asayama, M. & Shirai, M. (2003) J. Mol. Biol. 325, 857-872.
24. Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M. et al. (1995) Science 270, 397-403.
25. Mizuno, T., Kaneko, T. & Tabata, S. (1996) DNA Res. 3, 407-414.
26. Ohmori, M., lkeuchi, M., Sato, N., Wolk, P., Kaneko, T., Ogawa, T., Kanehisa, M., Goto, S., Kawashima, S., Okamoto, S. et al. (2001) DNA Res. 8, 271-284.
27. Meeks, J. C., Campbell, E. L., Summers, M. L. & Wong, F. C. (2002) Arch. Microbiol. 178, 395-403.
28. Galperin, M. Y., Nikolskaya, A. N. & Koonin, E. V. (2001) FEMS Microbiol. Lett. 203, 11-21.
29. Galperin, M. Y., Walker, D. R. & Koonin, E. V. (1998) Genome Res. 8, 779-790.
30. Schluchter, W. M. & Bryant, D. A. (1992) Biochemistry 31, 3092-3102.
31. Fillat, M. F., Flores, E. & Gomez-Moreno, C. (1993) Plant Mol. Biol. 22, 725-729.
32. Hess, W. R., Rocap, G., Ting, C. S., Larimer, F., Stilwagen, S., Lamerdin, J. & Chisholm, S. W. (2001) Photosynth. Res. 70, 53-71.
33. Garczarek, L., Hess, W. R., Holtzendorff, J., van der Staay, G. W., & Partensky, F. (2000) Proc. Natl. Acad. Sci. USA 97, 4098-4101.
34. Hess, W. R., Steglich, C., Lichtle, C. & Partensky, F. (1999) Plant Mol. Biol. 40, 507-521.
35. Frankenberg, N., Mukougawa, K., Kohchi, T. & Lagarias, J. C. (2001) Plant Cell 13, 965-978.
36. Suzuki, J. Y., Bollivar, D. W. & Bauer, C. E. (1997) Annu. Rev. Genet. 31, 61-89.
37. Oster, U., Tanaka, R., Tanaka, A. & Rudiger, W. (2000) Plant J. 21, 305-310.
38. Tanaka, A., Ito, H., Tanaka, R., Tanaka, N. K., Yoshida, K. & Okada, K. (1998) Proc. Natl. Acad. Sci. USA 95, 12719-12723.
39. Moore, L. R., Goericke, R. & Chisholm, S. W. (1995) Mar. Ecol. Prog. Ser. 116, 259-275.
40. Partensky, F. & Garczarek, L. (2003) in Photosynthesis in Algae, ed. Larkum, A. W. D. (Kluwer, Dordrecht, The Netherlands), Vol. 14, in press.
41. Shibata, M., Ohkawa, H., Katoh, H., Shimoyama, M. & Ogawa, T. (2002) Funct. Plant Biol. 29, 123-129.
42. Badger, M. R. & Price, G. D. (2003) J. Exp. Bot. 54, 609-622.
43. Tamoi, M., Murakami, A., Takeda, T. & Shigeoka, S. (1998) Biochim. Biophys. Acta 1383, 232-244.
44. Sakamoto, T., Inoue-Sakamoto, K. & Bryant, D. A. (1999) J. Bacteriol. 181, 7363-7372.
45. Zubkov, M. V., Fuchs, B. M., Tarran, G. A., Burkill, P. H. & Amann, R. (2003) Appl. Environ. Microbiol. 69, 1299-1304.
46. Scanlan, D. J. & West, N. J. (2002) FEMS Microbiol. Ecol. 40, 1-12.
47. Kather, B., Stingl, K., van der Rest, M. E., Altendorf, K. & Molenaar, D. (2000) J. Bacteriol. 182, 3204-3209.
48. Myllykallio, H., Lipowski, G., Leduc, D., Filee, J., Forterre, P. & Liebl, U. (2002) Science 297, 105-107.
49. Gleason, F. K. & Olszewski, N. E. (2002) J. Bacteriol. 184, 6544-6550.
50. Dzioba, J., Hase, C. C., Gosink, K., Galperin, M. Y. & Dibrov, P. (2003) J. Bacteriol. 185, 674-678.
51. Raven, J. A. (1994) J. Plankton Res. 16, 565-580.
52. Morel, A., Ahn, Y.-W., Partensky, F., Vaulot, D. & Claustre, H. (1993) J. Mar. Res. 51, 617-649.
53. Urbach, E., Scanlan, D. J., Distel, D. L., Waterbury, J. B. & Chisholm, S. W. (1998) J. Mol. Evol. 46, 188-201.
54. Bhaya, D., Takahashi, A. & Grossman, A. R. (2001) Proc. Natl. Acad. Sci. USA 98, 7540-7545.