Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 26, 2010, Pages 11669-11675

  McKinlay, James B ^a   Harwood, Caroline S ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Calvin cycle; Hydrogen gas; Metabolic flux analysis; Nitrogenase; Rhodopseudomonas

Indexed keywords

CARBON 13; CARBON DIOXIDE; NITROGENASE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BIOMASS; CARBON DIOXIDE FIXATION; NONHUMAN; PRIORITY JOURNAL; RHODOPSEUDOMONAS PALUSTRIS;

ACETIC ACID; BACTERIAL PROTEINS; CARBON DIOXIDE; CARBON ISOTOPES; ELECTRON TRANSPORT; GENES, BACTERIAL; HYDROGEN; MODELS, BIOLOGICAL; MUTATION; NITROGENASE; OXIDATION-REDUCTION; PHOTOSYNTHESIS; RHODOPSEUDOMONAS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

PHOTOBACTERIA; RHODOPSEUDOMONAS; RHODOPSEUDOMONAS PALUSTRIS;

EID: 77955388615     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1006175107     Document Type: Article

References (40)

1. Brock WH (1997) Justus von Liebig: The Chemical Gatekeeper (Cambridge Univ Press, Cambridge, UK).
2. Schlegel HG, Kohler W (1999) Biology of the Prokaryotes (Blackwell Science, Oxford).
3. Muller FM (1933) On the metabolism of the purple sulfur bacteria in organic media. Arch Microbiol 4:131-166.
4. 2 production by growing cultures. J Bacteriol 129:724-731.
5. Richardson DJ, et al. (1988) The role of auxillary oxidants in maintaining redox balance during photoheterotrophic growth of Rhodobacter capsulatus on propionate or butyrate. Arch Microbiol 150:131-137.
6. Falcone DL, Tabita FR (1991) Expression of endogenous and foreign ribulose 1,5-bisphosphate carboxylase-oxygenase (RubisCO) genes in a RubisCO deletion mutant of Rhodobacter sphaeroides. J Bacteriol 173:2099-2108.
7. Hallenbeck PL, Lerchen R, Hessler P, Kaplan S (1990) Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase expression in Rhodobacter sphaeroides. J Bacteriol 172:1736-1748.
8. Larimer FW, et al. (2004) Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat Biotechnol 22:55-61.
9. 13C metabolic flux analysis. Metab Eng 3:265-283.
10. Simpson FB, Burris RH (1984) A nitrogen pressure of 50 atmospheres does not prevent evolution of hydrogen by nitrogenase. Science 224:1095-1097.
11. Dixon R, Kahn D (2004) Genetic regulation of biological nitrogen fixation. Nat Rev Microbiol 2:621-631.
12. Rey FE, Heiniger EK, Harwood CS (2007) Redirection of metabolism for biological hydrogen production. Appl Environ Microbiol 73:1665-1671.
13. Romagnoli S, Tabita FR (2006) A novel three-protein two-component system provides a regulatory twist on an established circuit to modulate expression of the cbbI region of Rhodopseudomonas palustris CGA010. J Bacteriol 188:2780-2791.
14. Risso C, Van Dien SJ, Orloff A, Lovley DR, Coppi MV (2008) Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens. J Bacteriol 190: 2266-2274.
15. 2 assimilation, nitrogen fixation, hydrogen metabolism and energy generation. FEMS Microbiol Rev 28:353-376.
16. Elsen S, Swem LR, Swem DL, Bauer CE (2004) RegB/RegA, a highly conserved redox-responding global two-component regulatory system. Microbiol Mol Biol Rev 68:263-279.
17. Klamt S, Schuster S, Gilles ED (2002) Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol Bioeng 77:734-751.
18. Zhu YS, Kaplan S (1985) Effects of light, oxygen, and substrates on steady-state levels of mRNA coding for ribulose-1,5-bisphosphate carboxylase and light-harvesting and reaction center polypeptides in Rhodopseudomonas sphaeroides. J Bacteriol 162:925-932.
19. Tabita FR (1980) Pyridine nucleotide control and subunit structure of phosphoribulokinase from photosynthetic bacteria. J Bacteriol 143:1275-1280.
20. Tabita FR (1988) Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms. Microbiol Rev 52:155-189.
21. 13C-labeled metabolic product isotopomers. Metab Eng 9:177-192.
22. Salinero KK, et al. (2009) Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: Indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation. BMC Genomics 10:351.
23. Kane SR, et al. (2007) Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J Bacteriol 189:1931-1945.
24. Chain PS, et al. (2006) Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci USA 103:15280-15287.
25. Selesi D, Schmid M, Hartmann A (2005) Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl Environ Microbiol 71:175-184.
26. 2 fixation by soil microorganisms. Plant Soil 269:193-203.
27. Ormerod JG, Gest H (1962) Symposium on metabolism of inorganic compounds. IV. Hydrogen photosynthesis and alternative metabolic pathways in photosynthetic bacteria. Bacteriol Rev 269:51-66.
28. Tichi MA, Tabita FR (2000) Maintenance and control of redox poise in Rhodobacter capsulatus strains deficient in the Calvin-Benson-Bassham pathway. Arch Microbiol 174:322-333.
29. Joshi HM, Tabita FR (1996) A global two component signal transduction system that integrates the control of photosynthesis, carbon dioxide assimilation, and nitrogen fixation. Proc Natl Acad Sci USA 93:14515-14520.
30. Rey FE, Oda Y, Harwood CS (2006) Regulation of uptake hydrogenase and effects of hydrogen utilization on gene expression in Rhodopseudomonas palustris. J Bacteriol 188:6143-6152.
31. Kim MK, Harwood CS (1991) Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris. FEMS Microbiol Lett 83:199-203.
32. McKinlay JB, Zeikus JG, Vieille C (2005) Insights into Actinobacillus succinogenes fermentative metabolism in a chemically defined growth medium. Appl Environ Microbiol 71:6651-6656.
33. Goffman FD, Ruckle M, Ohlrogge J, Shachar-Hill Y (2004) Carbon dioxide concentrations are very high in developing oilseeds. Plant Physiol Biochem 42:703-708.
34. Wahl SA, Dauner M, Wiechert W (2004) New tools for mass isotopomer data evaluation in 13C flux analysis: Mass isotope correction, data consistency checking, and precursor relationships. Biotechnol Bioeng 85:259-268.
35. Schwender J, Shachar-Hill Y, Ohlrogge JB (2006) Mitochondrial metabolism in developing embryos of Brassica napus. J Biol Chem 281:34040-34047.
36. Wiechert W, Siefke C, de Graaf AA, Marx A (1997) Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis. Biotechnol Bioeng 55:118-135.
37. Oda Y, et al. (2005) Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris. J Bacteriol 187:7784-7794.
38. Hickman JW, Harwood CS (2008) Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factor. Mol Microbiol 69:376-389.
39. Gottschalk G (1986) Bacterial Metabolism (Springer-Verlag, New York).
40. Carlozzi P, Sacchi A (2001) Biomass production and studies on Rhodopseudomonas palustris grown in an outdoor, temperature controlled, underwater tubular photobioreactor. J Biotechnol 88:239-249.