Alternative oxidase and plastoquinol terminal oxidase in marine prokaryotes of the Sargasso Sea

Gene

Volumn 349, Issue , 2005, Pages 15-24

  McDonald, Allison E ^a   Vanlerberghe, Greg C ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Endosymbiosis; Metagenomics; Photosynthesis; Respiration

Indexed keywords

ALTERNATIVE OXIDASE; OXIDOREDUCTASE; PLASTOQUINOL TERMINAL OXIDASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIOPLANKTON; CYANOBACTERIUM; GENE SEQUENCE; GENOMICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROCHLOROCOCCUS; PROCHLOROCOCCUS MARINUS; PRODUCTIVITY; PROKARYOTE; SYNECHOCOCCUS; SYNTENY; UNINDEXED SEQUENCE;

EID: 17044402544     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.12.049     Document Type: Article

References (33)

1. M.R. Aluru, and S.R. Rodermel Control of chloroplast redox by the IMMUTANS terminal oxidase Physiol. Plant. 120 2004 4 11
2. 2 Glob. Biogeochem. Cycles 17 2003 1 12
3. A. Atteia, R. van Lis, J.J. van Hellemond, A.G.M. Tielens, W. Martin, and K. Henze Identification of prokaryotic homologues indicates an endosymbiotic origin for the alternative oxidases of mitochondria (AOX) and chloroplasts (PTOX) Gene 330 2004 143 148
4. O. Béjà, E.N. Spudich, J.L. Spudich, M. Leclerc, and E.F. DeLong Proteorhodopsin phototrophy in the ocean Nature 411 2001 786 789
5. P. Benichou, R. Calvayrac, and M. Claisse Induction by antimycin A of cyanide-resistant respiration in heterotrophic Euglena gracilis: effects on growth, respiration and protein biosynthesis Planta 175 1988 23 32
6. S. Berry, D. Schneider, W.F.J. Vermass, and M. Rogner Electron transport routes in whole cells of Synechocystis sp. strain PCC 6803: the role of the cytochrome bd-type oxidase Biochemistry 41 2002 3422 3429
7. D.A. Berthold, and P. Stenmark Membrane-bound diiron carboxylate proteins Annu. Rev. Plant Biol. 54 2003 497 517
8. J.R. de la Torre Proteorhodopsin genes are distributed among divergent marine bacterial taxa Proc. Natl. Acad. Sci. U. S. A. 100 2003 12830 12835
9. T.E. Elthon, R.L. Nickels, and L. McIntosh Monoclonal antibodies to the alternative oxidase of higher plant mitochondria Plant Physiol. 89 1989 1311 1317
10. N.T. Eriksen, and A.J. Lewitus Cyanide-resistant respiration in diverse marine phytoplankton: evidence for the widespread occurrence of the alternative oxidase Aquat. Microb. Ecol. 17 1999 145 152
11. M.J. Ferris, and B. Palenik Niche adaptation in ocean cyanobacteria Nature 396 1998 226 228
12. P.M. Finnegan, A. Wooding, and D. Day An alternative oxidase monoclonal antibody recognizes a highly conserved sequence among alternative oxidase subunits FEBS Lett. 447 1999 21 24
13. P.M. Finnegan, A.L. Umbach, and J.A. Wilce Prokaryotic origins for the mitochondrial alternative oxidase and plastid terminal oxidase nuclear genes FEBS Lett. 555 2003 425 430
14. R.S. Gupta The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins Int. Microbiol. 4 2001 187 202
15. W.R. Hess Genome analysis of marine photosynthetic microbes and their global role Curr. Opin. Biotechnol. 15 2004 191 198
16. S. Kumar, K. Tamura, I. Jakobsen, and M. Nei MEGA2: molecular evolutionary genetics analysis software 2001 Arizona State University USA
17. M.K. Kuntz Plastid terminal oxidase and its biological significance Planta 218 2004 896 899
18. 16O in unsaturated soils and geologic sediments Environ. Sci. Technol. 37 2003 2913 2919
19. B. Luz, E. Barkan, Y. Sagi, and Y.Z. Yacobi Evaluation of community respiratory mechanisms with oxygen isotopes: a case study in Lake Kinneret Limnol. Oceanogr. 47 2002 33 42
20. A.E. McDonald, and G.C. Vanlerberghe Branched mitochondrial electron transport in the Animalia: presence of alternative oxidase in several animal phyla IUBMB Life 56 2004 333 341
21. A.E. McDonald, S. Amirsadeghi, and G.C. Vanlerberghe Prokaryotic orthologues of mitochondrial alternative oxidase and plastid terminal oxidase Plant Mol. Biol. 53 2003 865 876
22. R.R. Robaina, P. García-Jiménez, I. Brito, and A. Luque Light control of the respiration of exogenous glycerol in the red macroalga Grateloupia doryphora Eur. J. Phycol. 30 1995 81 86
23. G. Rocap Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation Nature 424 2003 1042 1047
24. G. Sabehi, O. Béjà, M.T. Suzuki, C.M. Preston, and E.F. DeLong Different SAR86 subgroups harbour divergent proteorhodopsins Environ. Microbiol. 6 2004 903 910
25. U. Schreiber, R. Gademann, P. Bird, P. Ralph, A.W.D. Larkum, and M. Kuhl Apparent light requirement for activation of photosynthesis upon rehydration of dessicated beachrock microbial mats J. Phycol. 38 2002 125 134
26. J.N. Siedow, and A.L. Umbach The mitochondrial cyanide-resistant oxidase: structural conservation amid regulatory diversity Biochim. Biophys. Acta 1459 2000 432 439
27. P. Stenmark, and P. Nordlund A prokaryotic alternative oxidase present in the bacterium Novosphingobium aromaticivorans FEBS Lett. 552 2003 189 192
28. J. Thompson, T. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
29. G.C. Vanlerberghe, and S.H. Ordog Alternative oxidase: integrating carbon metabolism and electron transport in plant respiration C.H. Foyer G. Noctor Photosynthetic nitrogen assimilation and associated carbon and respiratory metabolism 2002 Kluwer Academic Publishers The Netherlands 173 191
30. J.C. Venter Environmental genome shotgun sequencing of the Sargasso Sea Science 304 2004 66 74
31. H.G. Weger, and R. Dasgupta Regulation of alternative pathway respiration in Chlamydomonas reinhardtii (Chlorophyceae) J. Phycol. 29 1993 300 308
32. W.B. Whitman, D.C. Coleman, and W.J. Wiebe Prokaryotes: the unseen majority Proc. Natl. Acad. Sci. U. S. A. 95 1998 6578 6583
33. D.Y. Wu, D.A. Wright, C. Wetzel, D.F. Voytas, and S. Rodermel The IMMUTANS variegation locus of Arabidopsis defines a mitochondrial alternative oxidase homolog that functions during early chloroplast biogenesis Plant Cell 11 1999 43 56