-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
[1] Aebersold, R., Mann, M., Mass spectrometry-based proteomics. Nature 422 (2003), 198–207, 10.1038/nature01511.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
77956304093
-
Mass spectrometry in high-throughput proteomics: ready for the big time
-
[2] Nilsson, T., Mann, M., Aebersold, R., Yates, J.R., Bairoch, A., Bergeron, J.J.M., Mass spectrometry in high-throughput proteomics: ready for the big time. Nat. Methods 7 (2010), 681–685, 10.1038/nmeth0910-681.
-
(2010)
Nat. Methods
, vol.7
, pp. 681-685
-
-
Nilsson, T.1
Mann, M.2
Aebersold, R.3
Yates, J.R.4
Bairoch, A.5
Bergeron, J.J.M.6
-
3
-
-
79953719716
-
More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC−MS/MS
-
[3] Michalski, A., Cox, J., Mann, M., More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC−MS/MS. J. Proteome Res. 10 (2011), 1785–1793, 10.1021/pr101060v.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1785-1793
-
-
Michalski, A.1
Cox, J.2
Mann, M.3
-
4
-
-
9144232912
-
UniProt: the universal protein knowledgebase
-
[4] Apweiler, R., UniProt: the universal protein knowledgebase. Nucleic Acids Res. 32 (2004), D115–D119, 10.1093/nar/gkh131.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
-
5
-
-
37549024654
-
The protein data bank: a historical perspective
-
[5] Berman, H.M., The protein data bank: a historical perspective. Acta Crystallogr. Sect. A 64 (2008), 88–95, 10.1107/S0108767307035623.
-
(2008)
Acta Crystallogr. Sect. A
, vol.64
, pp. 88-95
-
-
Berman, H.M.1
-
6
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
[6] Craig, R., Cortens, J.P., Beavis, R.C., Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 3 (2004), 1234–1242, 10.1021/pr049882h.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
7
-
-
23944526367
-
PRIDE: the proteomics identifications database
-
[7] Martens, L., Hermjakob, H., Jones, P., Adamski, M., Taylor, C., States, D., et al. PRIDE: the proteomics identifications database. Proteomics 5 (2005), 3537–3545, 10.1002/pmic.200401303.
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
Taylor, C.5
States, D.6
-
8
-
-
43049127826
-
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
-
[8] Deutsch, E.W., Lam, H., Aebersold, R., PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 9 (2008), 429–434, 10.1038/embor.2008.56.
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
9
-
-
84872000473
-
Proteomics meets the scientific method
-
[9] Picotti, P., Bodenmiller, B., Aebersold, R., Proteomics meets the scientific method. Nat. Methods 10 (2012), 24–27, 10.1038/nmeth.2291.
-
(2012)
Nat. Methods
, vol.10
, pp. 24-27
-
-
Picotti, P.1
Bodenmiller, B.2
Aebersold, R.3
-
10
-
-
84872000716
-
Targeted proteomics
-
[10] Marx, V., Targeted proteomics. Nat. Methods 10 (2012), 19–22, 10.1038/nmeth.2285.
-
(2012)
Nat. Methods
, vol.10
, pp. 19-22
-
-
Marx, V.1
-
11
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
[11] Liu, H., Sadygov, R.G., Yates, J.R., A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76 (2004), 4193–4201, 10.1021/ac0498563.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates, J.R.3
-
12
-
-
84874618870
-
Tools for label-free peptide quantification
-
[12] Nahnsen, S., Bielow, C., Reinert, K., Kohlbacher, O., Tools for label-free peptide quantification. Mol. Cell. Proteom. 12 (2013), 549–556, 10.1074/mcp.R112.025163.
-
(2013)
Mol. Cell. Proteom.
, vol.12
, pp. 549-556
-
-
Nahnsen, S.1
Bielow, C.2
Reinert, K.3
Kohlbacher, O.4
-
13
-
-
0032875697
-
No title
-
[13] Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H., Aebersold, R., No title. Nat. Biotechnol. 17 (1999), 994–999, 10.1038/13690.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
14
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
[14] Ong, S.-E., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteom. 1 (2002), 376–386, 10.1074/mcp.M200025-MCP200.
-
(2002)
Mol. Cell. Proteom.
, vol.1
, pp. 376-386
-
-
Ong, S.-E.1
-
15
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
[15] Ross, P.L., Huang, Y.N., Marchese, J.N., Williamson, B., Parker, K., Hattan, S., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteom. 3 (2004), 1154–1169, 10.1074/mcp.M400129-MCP200.
-
(2004)
Mol. Cell. Proteom.
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
-
16
-
-
84865603658
-
An insight into iTRAQ: where do we stand now?
-
[16] Evans, C., Noirel, J., Ow, S.Y., Salim, M., Pereira-Medrano, A.G., Couto, N., et al. An insight into iTRAQ: where do we stand now?. Anal. Bioanal. Chem. 404 (2012), 1011–1027, 10.1007/s00216-012-5918-6.
-
(2012)
Anal. Bioanal. Chem.
, vol.404
, pp. 1011-1027
-
-
Evans, C.1
Noirel, J.2
Ow, S.Y.3
Salim, M.4
Pereira-Medrano, A.G.5
Couto, N.6
-
17
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
[17] Boersema, P.J., Raijmakers, R., Lemeer, S., Mohammed, S., Heck, A.J.R., Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4 (2009), 484–494, 10.1038/nprot.2009.21.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.R.5
-
18
-
-
76149142168
-
Repeatability and reproducibility in proteomic identifications by liquid Chromatography−Tandem mass spectrometry
-
[18] Tabb, D.L., Vega-Montoto, L., Rudnick, P.A., Variyath, A.M., Ham, A.-J.L., Bunk, D.M., et al. Repeatability and reproducibility in proteomic identifications by liquid Chromatography−Tandem mass spectrometry. J. Proteome Res. 9 (2010), 761–776, 10.1021/pr9006365.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 761-776
-
-
Tabb, D.L.1
Vega-Montoto, L.2
Rudnick, P.A.3
Variyath, A.M.4
Ham, A.-J.L.5
Bunk, D.M.6
-
19
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
[19] Nagaraj, N., Wisniewski, J.R., Geiger, T., Cox, J., Kircher, M., Kelso, J., et al. Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol., 7, 2011, 548, 10.1038/msb.2011.81.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
-
20
-
-
82155179339
-
The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells
-
[20] Munoz, J., Low, T.Y., Kok, Y.J., Chin, A., Frese, C.K., Ding, V., et al. The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells. Mol. Syst. Biol., 7, 2011, 550, 10.1038/msb.2011.84.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 550
-
-
Munoz, J.1
Low, T.Y.2
Kok, Y.J.3
Chin, A.4
Frese, C.K.5
Ding, V.6
-
21
-
-
80855128111
-
The quantitative proteome of a human cell line
-
[21] Beck, M., Schmidt, A., Malmstroem, J., Claassen, M., Ori, A., Szymborska, A., et al. The quantitative proteome of a human cell line. Mol. Syst. Biol., 7, 2011, 549, 10.1038/msb.2011.82.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 549
-
-
Beck, M.1
Schmidt, A.2
Malmstroem, J.3
Claassen, M.4
Ori, A.5
Szymborska, A.6
-
22
-
-
75749130354
-
The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum
-
[22] Anderson, N.L., The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum. Clin. Chem. 56 (2010), 177–185, 10.1373/clinchem.2009.126706.
-
(2010)
Clin. Chem.
, vol.56
, pp. 177-185
-
-
Anderson, N.L.1
-
23
-
-
84958185563
-
Protein species as diagnostic markers
-
[23] Steffen, P., Kwiatkowski, M., Robertson, W.D., Zarrine-Afsar, A., Deterra, D., Richter, V., et al. Protein species as diagnostic markers. J. Proteom. 134 (2016), 5–18, 10.1016/j.jprot.2015.12.015.
-
(2016)
J. Proteom.
, vol.134
, pp. 5-18
-
-
Steffen, P.1
Kwiatkowski, M.2
Robertson, W.D.3
Zarrine-Afsar, A.4
Deterra, D.5
Richter, V.6
-
24
-
-
84872047763
-
The long journey of cancer biomarkers from the bench to the clinic
-
[24] Pavlou, M.P., Diamandis, E.P., Blasutig, I.M., The long journey of cancer biomarkers from the bench to the clinic. Clin. Chem. 59 (2013), 147–157, 10.1373/clinchem.2012.184614.
-
(2013)
Clin. Chem.
, vol.59
, pp. 147-157
-
-
Pavlou, M.P.1
Diamandis, E.P.2
Blasutig, I.M.3
-
25
-
-
84891774053
-
Translation of proteomic biomarkers into FDA approved cancer diagnostics: issues and challenges
-
[25] Füzéry, A.K., Levin, J., Chan, M.M., Chan, D.W., Translation of proteomic biomarkers into FDA approved cancer diagnostics: issues and challenges. Clin. Proteom., 10, 2013, 13, 10.1186/1559-0275-10-13.
-
(2013)
Clin. Proteom.
, vol.10
, pp. 13
-
-
Füzéry, A.K.1
Levin, J.2
Chan, M.M.3
Chan, D.W.4
-
26
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
-
[26] Addona, T.A., Abbatiello, S.E., Schilling, B., Skates, S.J., Mani, D.R., Bunk, D.M., et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma. Nat. Biotechnol. 27 (2009), 633–641, 10.1038/nbt.1546.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
Mani, D.R.5
Bunk, D.M.6
-
27
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
[27] Picotti, P., Bodenmiller, B., Mueller, L.N., Domon, B., Aebersold, R., Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell. 138 (2009), 795–806, 10.1016/j.cell.2009.05.051.
-
(2009)
Cell.
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
28
-
-
79960245388
-
Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor
-
[28] Bisson, N., James, D.A., Ivosev, G., Tate, S.A., Bonner, R., Taylor, L., et al. Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor. Nat. Biotechnol. 29 (2011), 653–658, 10.1038/nbt.1905.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 653-658
-
-
Bisson, N.1
James, D.A.2
Ivosev, G.3
Tate, S.A.4
Bonner, R.5
Taylor, L.6
-
29
-
-
84871791617
-
Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes
-
[29] Karlsson, C., Malmström, L., Aebersold, R., Malmström, J., Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes. Nat. Commun., 3, 2012, 1301, 10.1038/ncomms2297.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1301
-
-
Karlsson, C.1
Malmström, L.2
Aebersold, R.3
Malmström, J.4
-
30
-
-
84873724658
-
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
-
[30] Picotti, P., Clément-Ziza, M., Lam, H., Campbell, D.S., Schmidt, A., Deutsch, E.W., et al. A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis. Nature 494 (2013), 266–270, 10.1038/nature11835.
-
(2013)
Nature
, vol.494
, pp. 266-270
-
-
Picotti, P.1
Clément-Ziza, M.2
Lam, H.3
Campbell, D.S.4
Schmidt, A.5
Deutsch, E.W.6
-
31
-
-
84881228732
-
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines
-
648–648
-
[31] Ori, A., Banterle, N., Iskar, M., Andres-Pons, A., Escher, C., Khanh Bui, H., et al. Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines. Mol. Syst. Biol., 9, 2014, 10.1038/msb.2013.4 648–648.
-
(2014)
Mol. Syst. Biol.
, vol.9
-
-
Ori, A.1
Banterle, N.2
Iskar, M.3
Andres-Pons, A.4
Escher, C.5
Khanh Bui, H.6
-
32
-
-
84877863368
-
The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis
-
[32] Schubert, O.T., Mouritsen, J., Ludwig, C., Röst, H.L., Rosenberger, G., Arthur, P.K., et al. The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis. Cell Host Microbe 13 (2013), 602–612, 10.1016/j.chom.2013.04.008.
-
(2013)
Cell Host Microbe
, vol.13
, pp. 602-612
-
-
Schubert, O.T.1
Mouritsen, J.2
Ludwig, C.3
Röst, H.L.4
Rosenberger, G.5
Arthur, P.K.6
-
33
-
-
84874478799
-
Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins
-
[33] Mirzaei, H., Knijnenburg, T.A., Kim, B., Robinson, M., Picotti, P., Carter, G.W., et al. Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins. Proc. Natl. Acad. Sci. 110 (2013), 3645–3650, 10.1073/pnas.1216918110.
-
(2013)
Proc. Natl. Acad. Sci.
, vol.110
, pp. 3645-3650
-
-
Mirzaei, H.1
Knijnenburg, T.A.2
Kim, B.3
Robinson, M.4
Picotti, P.5
Carter, G.W.6
-
34
-
-
84880441014
-
Temporal regulation of EGF signalling networks by the scaffold protein Shc1
-
[34] Zheng, Y., Zhang, C., Croucher, D.R., Soliman, M.A., St-Denis, N., Pasculescu, A., et al. Temporal regulation of EGF signalling networks by the scaffold protein Shc1. Nature 499 (2013), 166–171, 10.1038/nature12308.
-
(2013)
Nature
, vol.499
, pp. 166-171
-
-
Zheng, Y.1
Zhang, C.2
Croucher, D.R.3
Soliman, M.A.4
St-Denis, N.5
Pasculescu, A.6
-
35
-
-
84941737510
-
Applications of targeted proteomics in systems biology and translational medicine
-
[35] Ebhardt, H.A., Root, A., Sander, C., Aebersold, R., Applications of targeted proteomics in systems biology and translational medicine. Proteomics 15 (2015), 3193–3208, 10.1002/pmic.201500004.
-
(2015)
Proteomics
, vol.15
, pp. 3193-3208
-
-
Ebhardt, H.A.1
Root, A.2
Sander, C.3
Aebersold, R.4
-
36
-
-
79960214321
-
A targeted proteomics–based pipeline for verification of biomarkers in plasma
-
[36] Whiteaker, J.R., Lin, C., Kennedy, J., Hou, L., Trute, M., Sokal, I., et al. A targeted proteomics–based pipeline for verification of biomarkers in plasma. Nat. Biotechnol. 29 (2011), 625–634, 10.1038/nbt.1900.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 625-634
-
-
Whiteaker, J.R.1
Lin, C.2
Kennedy, J.3
Hou, L.4
Trute, M.5
Sokal, I.6
-
37
-
-
79952308635
-
Systematic quantification of peptides/proteins in urine using selected reaction monitoring
-
[37] Selevsek, N., Matondo, M., Carbayo, M.S., Aebersold, R., Domon, B., Systematic quantification of peptides/proteins in urine using selected reaction monitoring. Proteomics 11 (2011), 1135–1147, 10.1002/pmic.201000599.
-
(2011)
Proteomics
, vol.11
, pp. 1135-1147
-
-
Selevsek, N.1
Matondo, M.2
Carbayo, M.S.3
Aebersold, R.4
Domon, B.5
-
38
-
-
84859312471
-
Multiple-reaction monitoring-mass spectrometric assays can accurately measure the relative protein abundance in complex mixtures
-
[38] Hoofnagle, A.N., Becker, J.O., Oda, M.N., Cavigiolio, G., Mayer, P., Vaisar, T., Multiple-reaction monitoring-mass spectrometric assays can accurately measure the relative protein abundance in complex mixtures. Clin. Chem. 58 (2012), 777–781, 10.1373/clinchem.2011.173856.
-
(2012)
Clin. Chem.
, vol.58
, pp. 777-781
-
-
Hoofnagle, A.N.1
Becker, J.O.2
Oda, M.N.3
Cavigiolio, G.4
Mayer, P.5
Vaisar, T.6
-
39
-
-
84863923380
-
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
-
[39] Huttenhain, R., Soste, M., Selevsek, N., Rost, H., Sethi, A., Carapito, C., et al. Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics. Sci. Transl. Med., 4, 2012, 142ra94, 10.1126/scitranslmed.3003989.
-
(2012)
Sci. Transl. Med.
, vol.4
, pp. 142ra94
-
-
Huttenhain, R.1
Soste, M.2
Selevsek, N.3
Rost, H.4
Sethi, A.5
Carapito, C.6
-
40
-
-
84895072645
-
Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins
-
[40] Kennedy, J.J., Abbatiello, S.E., Kim, K., Yan, P., Whiteaker, J.R., Lin, C., et al. Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Nat. Methods 11 (2013), 149–155, 10.1038/nmeth.2763.
-
(2013)
Nat. Methods
, vol.11
, pp. 149-155
-
-
Kennedy, J.J.1
Abbatiello, S.E.2
Kim, K.3
Yan, P.4
Whiteaker, J.R.5
Lin, C.6
-
41
-
-
0015116634
-
Enzyme-linked immunosorbent assay (ELISA) quantitative assay of immunoglobulin G
-
[41] Engvall, E., Perlmann, P., Enzyme-linked immunosorbent assay (ELISA) quantitative assay of immunoglobulin G. Immunochemistry 8 (1971), 871–874, 10.1016/0019-2791(71)90454-X.
-
(1971)
Immunochemistry
, vol.8
, pp. 871-874
-
-
Engvall, E.1
Perlmann, P.2
-
42
-
-
0009482260
-
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications
-
[42] Towbin, H., Staehelin, T., Gordon, J., Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. 76 (1979), 4350–4354, 10.1073/pnas.76.9.4350.
-
(1979)
Proc. Natl. Acad. Sci.
, vol.76
, pp. 4350-4354
-
-
Towbin, H.1
Staehelin, T.2
Gordon, J.3
-
43
-
-
77954062372
-
Antibody validation
-
[43] Bordeaux, J., Welsh, A., Agarwal, S., Killiam, E., Baquero, M., Hanna, J., et al. Antibody validation. Biotechniques 48 (2010), 197–209, 10.2144/000113382.
-
(2010)
Biotechniques
, vol.48
, pp. 197-209
-
-
Bordeaux, J.1
Welsh, A.2
Agarwal, S.3
Killiam, E.4
Baquero, M.5
Hanna, J.6
-
44
-
-
79953227740
-
Increased selectivity, analytical precision, and throughput in targeted proteomics
-
[44] Kiyonami, R., Schoen, A., Prakash, A., Peterman, S., Zabrouskov, V., Picotti, P., et al. Increased selectivity, analytical precision, and throughput in targeted proteomics. Mol. Cell. Proteom., 10, 2011, 10.1074/mcp.M110.002931.
-
(2011)
Mol. Cell. Proteom.
, vol.10
-
-
Kiyonami, R.1
Schoen, A.2
Prakash, A.3
Peterman, S.4
Zabrouskov, V.5
Picotti, P.6
-
45
-
-
33745772143
-
Absolute quantification of Atlantic salmon and rainbow trout vitellogenin by the “signature peptide” approach using electrospray ionization QqToF tandem mass spectrometry
-
[45] Cohen, A.M., Mansour, A.A.H., Banoub, J.H., Absolute quantification of Atlantic salmon and rainbow trout vitellogenin by the “signature peptide” approach using electrospray ionization QqToF tandem mass spectrometry. J. Mass Spectrom. 41 (2006), 646–658, 10.1002/jms.1023.
-
(2006)
J. Mass Spectrom.
, vol.41
, pp. 646-658
-
-
Cohen, A.M.1
Mansour, A.A.H.2
Banoub, J.H.3
-
46
-
-
84861833387
-
Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides
-
[46] Sherrod, S.D., Myers, M.V., Li, M., Myers, J.S., Carpenter, K.L., MacLean, B., et al. Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides. J. Proteome Res. 11 (2012), 3467–3479, 10.1021/pr201240a.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 3467-3479
-
-
Sherrod, S.D.1
Myers, M.V.2
Li, M.3
Myers, J.S.4
Carpenter, K.L.5
MacLean, B.6
-
47
-
-
84869233177
-
Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics
-
[47] Peterson, A.C., Russell, J.D., Bailey, D.J., Westphall, M.S., Coon, J.J., Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Mol. Cell. Proteom. 11 (2012), 1475–1488, 10.1074/mcp.O112.020131.
-
(2012)
Mol. Cell. Proteom.
, vol.11
, pp. 1475-1488
-
-
Peterson, A.C.1
Russell, J.D.2
Bailey, D.J.3
Westphall, M.S.4
Coon, J.J.5
-
48
-
-
14744293536
-
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
-
[48] Venable, J.D., Dong, M.-Q., Wohlschlegel, J., Dillin, A., Yates, J.R., Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nat. Methods 1 (2004), 39–45, 10.1038/nmeth705.
-
(2004)
Nat. Methods
, vol.1
, pp. 39-45
-
-
Venable, J.D.1
Dong, M.-Q.2
Wohlschlegel, J.3
Dillin, A.4
Yates, J.R.5
-
49
-
-
84923838580
-
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
-
[49] Tsou, C.-C., Avtonomov, D., Larsen, B., Tucholska, M., Choi, H., Gingras, A.-C., et al. DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics. Nat. Methods 12 (2015), 258–264, 10.1038/nmeth.3255.
-
(2015)
Nat. Methods
, vol.12
, pp. 258-264
-
-
Tsou, C.-C.1
Avtonomov, D.2
Larsen, B.3
Tucholska, M.4
Choi, H.5
Gingras, A.-C.6
-
50
-
-
79952540456
-
Selected reaction monitoring applied to proteomics
-
[50] Gallien, S., Duriez, E., Domon, B., Selected reaction monitoring applied to proteomics. J. Mass Spectrom. 46 (2011), 298–312, 10.1002/jms.1895.
-
(2011)
J. Mass Spectrom.
, vol.46
, pp. 298-312
-
-
Gallien, S.1
Duriez, E.2
Domon, B.3
-
51
-
-
0001366599
-
Triple quadrupole mass spectrometry for direct mixture analysis and structure elucidation
-
[51] Yost, R.A., Enke, C.G., Triple quadrupole mass spectrometry for direct mixture analysis and structure elucidation. Anal. Chem. 51 (1979), 1251–1264, 10.1021/ac50048a002.
-
(1979)
Anal. Chem.
, vol.51
, pp. 1251-1264
-
-
Yost, R.A.1
Enke, C.G.2
-
52
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
[52] Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol., 4, 2008, 222, 10.1038/msb.2008.61.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
53
-
-
78650355102
-
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
-
[53] MacLean, B., Tomazela, D.M., Abbatiello, S.E., Zhang, S., Whiteaker, J.R., Paulovich, A.G., et al. Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry. Anal. Chem. 82 (2010), 10116–10124, 10.1021/ac102179j.
-
(2010)
Anal. Chem.
, vol.82
, pp. 10116-10124
-
-
MacLean, B.1
Tomazela, D.M.2
Abbatiello, S.E.3
Zhang, S.4
Whiteaker, J.R.5
Paulovich, A.G.6
-
54
-
-
84979649391
-
Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
-
[54] Kusebauch, U., Campbell, D.S., Deutsch, E.W., Chu, C.S., Spicer, D.A., Brusniak, M.-Y., et al. Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome. Cell 166 (2016), 766–778, 10.1016/j.cell.2016.06.041.
-
(2016)
Cell
, vol.166
, pp. 766-778
-
-
Kusebauch, U.1
Campbell, D.S.2
Deutsch, E.W.3
Chu, C.S.4
Spicer, D.A.5
Brusniak, M.-Y.6
-
55
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
[55] Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D.A., White, F.M., Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. 104 (2007), 5860–5865, 10.1073/pnas.0608638104.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
56
-
-
71049137289
-
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
-
[56] Kuzyk, M.A., Smith, D., Yang, J., Cross, T.J., Jackson, A.M., Hardie, D.B., et al. Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol. Cell. Proteom. 8 (2009), 1860–1877, 10.1074/mcp.M800540-MCP200.
-
(2009)
Mol. Cell. Proteom.
, vol.8
, pp. 1860-1877
-
-
Kuzyk, M.A.1
Smith, D.2
Yang, J.3
Cross, T.J.4
Jackson, A.M.5
Hardie, D.B.6
-
57
-
-
84866309522
-
Recent developments in liquid chromatography–mass spectrometry and related techniques
-
[57] Holčapek, M., Jirásko, R., Lísa, M., Recent developments in liquid chromatography–mass spectrometry and related techniques. J. Chromatogr. A 1259 (2012), 3–15, 10.1016/j.chroma.2012.08.072.
-
(2012)
J. Chromatogr. A
, vol.1259
, pp. 3-15
-
-
Holčapek, M.1
Jirásko, R.2
Lísa, M.3
-
58
-
-
84897083718
-
UPLC–MSE application in disease biomarker discovery: the discoveries in proteomics to metabolomics
-
[58] Zhao, Y.-Y., Lin, R.-C., UPLC–MSE application in disease biomarker discovery: the discoveries in proteomics to metabolomics. Chem. Biol. Interact. 215 (2014), 7–16, 10.1016/j.cbi.2014.02.014.
-
(2014)
Chem. Biol. Interact.
, vol.215
, pp. 7-16
-
-
Zhao, Y.-Y.1
Lin, R.-C.2
-
59
-
-
66749165277
-
A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: multiple reaction monitoring-initiated detection and sequencing (MIDAS)
-
[59] Unwin, R.D., Griffiths, J.R., Whetton, A.D., A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: multiple reaction monitoring-initiated detection and sequencing (MIDAS). Nat. Protoc. 4 (2009), 870–877, 10.1038/nprot.2009.57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 870-877
-
-
Unwin, R.D.1
Griffiths, J.R.2
Whetton, A.D.3
-
60
-
-
84879593559
-
Review of software tools for design and analysis of large scale MRM proteomic datasets
-
[60] Colangelo, C.M., Chung, L., Bruce, C., Cheung, K.-H., Review of software tools for design and analysis of large scale MRM proteomic datasets. Methods 61 (2013), 287–298, 10.1016/j.ymeth.2013.05.004.
-
(2013)
Methods
, vol.61
, pp. 287-298
-
-
Colangelo, C.M.1
Chung, L.2
Bruce, C.3
Cheung, K.-H.4
-
61
-
-
77956952863
-
Predicting peptide retention times for proteomics
-
John Wiley & Sons, Inc. Hoboken, NJ, USA p. Unit 13.14
-
[61] Krokhin, O.V., Spicer, V., Predicting peptide retention times for proteomics. Curr. Protoc. Bioinforma, 2010, John Wiley & Sons, Inc., Hoboken, NJ, USA, 10.1002/0471250953.bi1314s31 p. Unit 13.14.
-
(2010)
Curr. Protoc. Bioinforma
-
-
Krokhin, O.V.1
Spicer, V.2
-
62
-
-
21744435622
-
Innovation: scoring proteomes with proteotypic peptide probes
-
[62] Kuster, B., Schirle, M., Mallick, P., Aebersold, R., Innovation: scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol. 6 (2005), 577–583, 10.1038/nrm1683.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 577-583
-
-
Kuster, B.1
Schirle, M.2
Mallick, P.3
Aebersold, R.4
-
63
-
-
33747885134
-
A computational approach toward label-free protein quantification using predicted peptide detectability
-
[63] Tang, H., Arnold, R.J., Alves, P., Xun, Z., Clemmer, D.E., V Novotny, M., et al. A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics 22 (2006), e481–e488, 10.1093/bioinformatics/btl237.
-
(2006)
Bioinformatics
, vol.22
, pp. e481-e488
-
-
Tang, H.1
Arnold, R.J.2
Alves, P.3
Xun, Z.4
Clemmer, D.E.5
V Novotny, M.6
-
64
-
-
63049090914
-
How specific is my SRM?: the issue of precursor and product ion redundancy
-
[64] Sherman, J., McKay, M.J., Ashman, K., Molloy, M.P., How specific is my SRM?: the issue of precursor and product ion redundancy. Proteomics 9 (2009), 1120–1123, 10.1002/pmic.200800577.
-
(2009)
Proteomics
, vol.9
, pp. 1120-1123
-
-
Sherman, J.1
McKay, M.J.2
Ashman, K.3
Molloy, M.P.4
-
65
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
[65] Mallick, P., Schirle, M., Chen, S.S., Flory, M.R., Lee, H., Martin, D., et al. Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 25 (2007), 125–131, 10.1038/nbt1275.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.S.3
Flory, M.R.4
Lee, H.5
Martin, D.6
-
66
-
-
59849093889
-
Prediction of high-responding peptides for targeted protein assays by mass spectrometry
-
[66] Fusaro, V.A., Mani, D.R., Mesirov, J.P., Carr, S.A., Prediction of high-responding peptides for targeted protein assays by mass spectrometry. Nat. Biotechnol. 27 (2009), 190–198, 10.1038/nbt.1524.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 190-198
-
-
Fusaro, V.A.1
Mani, D.R.2
Mesirov, J.P.3
Carr, S.A.4
-
67
-
-
84874625369
-
Proteoform: a single term describing protein complexity
-
[67] Smith, L.M., Kelleher, N.L., Linial, M., Goodlett, D., Langridge-Smith, P., Ah Goo, Y., et al. Proteoform: a single term describing protein complexity. Nat. Methods 10 (2013), 186–187, 10.1038/nmeth.2369.
-
(2013)
Nat. Methods
, vol.10
, pp. 186-187
-
-
Smith, L.M.1
Kelleher, N.L.2
Linial, M.3
Goodlett, D.4
Langridge-Smith, P.5
Ah Goo, Y.6
-
68
-
-
84921748614
-
Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome
-
[68] Worboys, J.D., Sinclair, J., Yuan, Y., Jørgensen, C., Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome. Nat. Methods 11 (2014), 1041–1044, 10.1038/nmeth.3072.
-
(2014)
Nat. Methods
, vol.11
, pp. 1041-1044
-
-
Worboys, J.D.1
Sinclair, J.2
Yuan, Y.3
Jørgensen, C.4
-
69
-
-
33644876912
-
The PeptideAtlas project
-
[69] Desiere, F., The PeptideAtlas project. Nucleic Acids Res. 34 (2006), D655–D658, 10.1093/nar/gkj040.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D655-D658
-
-
Desiere, F.1
-
70
-
-
84863900597
-
A computational tool to detect and avoid redundancy in selected reaction monitoring
-
[70] Rost, H., Malmstrom, L., Aebersold, R., A computational tool to detect and avoid redundancy in selected reaction monitoring. Mol. Cell. Proteom. 11 (2012), 540–549, 10.1074/mcp.M111.013045.
-
(2012)
Mol. Cell. Proteom.
, vol.11
, pp. 540-549
-
-
Rost, H.1
Malmstrom, L.2
Aebersold, R.3
-
71
-
-
77951965920
-
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
-
[71] MacLean, B., Tomazela, D.M., Shulman, N., Chambers, M., Finney, G.L., Frewen, B., et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26 (2010), 966–968, 10.1093/bioinformatics/btq054.
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
Finney, G.L.5
Frewen, B.6
-
72
-
-
0031002520
-
Detailed peptide characterization using PEPTIDEMASS - a World-Wide-Web-accessible tool
-
[72] Wilkins, M.R., Lindskog, I., Gasteiger, E., Bairoch, A., Sanchez, J.-C., Hochstrasser, D.F., et al. Detailed peptide characterization using PEPTIDEMASS - a World-Wide-Web-accessible tool. Electrophoresis 18 (1997), 403–408, 10.1002/elps.1150180314.
-
(1997)
Electrophoresis
, vol.18
, pp. 403-408
-
-
Wilkins, M.R.1
Lindskog, I.2
Gasteiger, E.3
Bairoch, A.4
Sanchez, J.-C.5
Hochstrasser, D.F.6
-
73
-
-
84899997891
-
PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments
-
[73] Mohammed, Y., Domański, D., Jackson, A.M., Smith, D.S., Deelder, A.M., Palmblad, M., et al. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. J. Proteom. 106 (2014), 151–161, 10.1016/j.jprot.2014.04.018.
-
(2014)
J. Proteom.
, vol.106
, pp. 151-161
-
-
Mohammed, Y.1
Domański, D.2
Jackson, A.M.3
Smith, D.S.4
Deelder, A.M.5
Palmblad, M.6
-
74
-
-
84885092136
-
Identification of a novel proteoform of prostate specific antigen (SNP-L132I) in clinical samples by multiple reaction monitoring
-
[74] Vegvari, A., Sjodin, K., Rezeli, M., Malm, J., Lilja, H., Laurell, T., et al. Identification of a novel proteoform of prostate specific antigen (SNP-L132I) in clinical samples by multiple reaction monitoring. Mol. Cell. Proteom. 12 (2013), 2761–2773, 10.1074/mcp.M113.028365.
-
(2013)
Mol. Cell. Proteom.
, vol.12
, pp. 2761-2773
-
-
Vegvari, A.1
Sjodin, K.2
Rezeli, M.3
Malm, J.4
Lilja, H.5
Laurell, T.6
-
75
-
-
84907889657
-
Absolute quantification of histone PTM marks by MRM-based LC-MS/MS
-
[75] Gao, J., Liao, R., Yu, Y., Zhai, H., Wang, Y., Sack, R., et al. Absolute quantification of histone PTM marks by MRM-based LC-MS/MS. Anal. Chem. 86 (2014), 9679–9686, 10.1021/ac502333a.
-
(2014)
Anal. Chem.
, vol.86
, pp. 9679-9686
-
-
Gao, J.1
Liao, R.2
Yu, Y.3
Zhai, H.4
Wang, Y.5
Sack, R.6
-
76
-
-
84860856503
-
PASSEL: the PeptideAtlas SRMexperiment library
-
[76] Farrah, T., Deutsch, E.W., Kreisberg, R., Sun, Z., Campbell, D.S., Mendoza, L., et al. PASSEL: the PeptideAtlas SRMexperiment library. Proteomics 12 (2012), 1170–1175, 10.1002/pmic.201100515.
-
(2012)
Proteomics
, vol.12
, pp. 1170-1175
-
-
Farrah, T.1
Deutsch, E.W.2
Kreisberg, R.3
Sun, Z.4
Campbell, D.S.5
Mendoza, L.6
-
77
-
-
84907865588
-
Panorama: a targeted proteomics knowledge base
-
[77] Sharma, V., Eckels, J., Taylor, G.K., Shulman, N.J., Stergachis, A.B., Joyner, S.A., et al. Panorama: a targeted proteomics knowledge base. J. Proteome Res. 13 (2014), 4205–4210, 10.1021/pr5006636.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 4205-4210
-
-
Sharma, V.1
Eckels, J.2
Taylor, G.K.3
Shulman, N.J.4
Stergachis, A.B.5
Joyner, S.A.6
-
78
-
-
0004098488
-
Quantitative Chemical Analysis
-
eighth ed. W. H. Freeman and Company New York
-
[78] Harris, D.C., Quantitative Chemical Analysis. eighth ed., 2010, W. H. Freeman and Company, New York.
-
(2010)
-
-
Harris, D.C.1
-
79
-
-
67349191957
-
Guidance for Industry: Bioanalytical Method Validation
-
MD CDER Rockville
-
[79] U. FDA, Guidance for Industry: Bioanalytical Method Validation. 2001, MD CDER, Rockville, 25.
-
(2001)
, pp. 25
-
-
U. FDA1
-
80
-
-
85015972606
-
-
[80] Chase, D.H., Barr, J.R., Duncan, M.W., Matern, D., Morris, M.R., Palmer-Toy, D.E., et al. Mass Spectrometry in the Clinical Laboratory: General Principles and Guidance: Approved Guideline, vol. 27, 2007.
-
(2007)
Mass Spectrometry in the Clinical Laboratory: General Principles and Guidance: Approved Guideline
, vol.27
-
-
Chase, D.H.1
Barr, J.R.2
Duncan, M.W.3
Matern, D.4
Morris, M.R.5
Palmer-Toy, D.E.6
-
81
-
-
84895555123
-
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach
-
[81] Carr, S.A., Abbatiello, S.E., Ackermann, B.L., Borchers, C., Domon, B., Deutsch, E.W., et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol. Cell. Proteom. 13 (2014), 907–917, 10.1074/mcp.M113.036095.
-
(2014)
Mol. Cell. Proteom.
, vol.13
, pp. 907-917
-
-
Carr, S.A.1
Abbatiello, S.E.2
Ackermann, B.L.3
Borchers, C.4
Domon, B.5
Deutsch, E.W.6
-
82
-
-
0038574979
-
Ion suppression in mass spectrometry
-
[82] Annesley, T., Ion suppression in mass spectrometry. Clin. Chem. 49 (2003), 1041–1044.
-
(2003)
Clin. Chem.
, vol.49
, pp. 1041-1044
-
-
Annesley, T.1
-
83
-
-
84877813399
-
Selectivity of LC-MS/MS analysis: implication for proteomics experiments
-
[83] Gallien, S., Duriez, E., Demeure, K., Domon, B., Selectivity of LC-MS/MS analysis: implication for proteomics experiments. J. Proteom. 81 (2013), 148–158, 10.1016/j.jprot.2012.11.005.
-
(2013)
J. Proteom.
, vol.81
, pp. 148-158
-
-
Gallien, S.1
Duriez, E.2
Demeure, K.3
Domon, B.4
-
84
-
-
14844313671
-
Matrix effects: the Achilles heel of quantitative high-performance liquid chromatography–electrospray–tandem mass spectrometry
-
[84] Taylor, P.J., Matrix effects: the Achilles heel of quantitative high-performance liquid chromatography–electrospray–tandem mass spectrometry. Clin. Biochem. 38 (2005), 328–334, 10.1016/j.clinbiochem.2004.11.007.
-
(2005)
Clin. Biochem.
, vol.38
, pp. 328-334
-
-
Taylor, P.J.1
-
85
-
-
34548180275
-
A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme
-
[85] Janecki, D.J., Bemis, K.G., Tegeler, T.J., Sanghani, P.C., Zhai, L., Hurley, T.D., et al. A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme. Anal. Biochem. 369 (2007), 18–26, 10.1016/j.ab.2007.06.043.
-
(2007)
Anal. Biochem.
, vol.369
, pp. 18-26
-
-
Janecki, D.J.1
Bemis, K.G.2
Tegeler, T.J.3
Sanghani, P.C.4
Zhai, L.5
Hurley, T.D.6
-
86
-
-
44949213072
-
Towards absolute quantification of therapeutic monoclonal antibody in serum by LC−MS/MS using isotope-labeled antibody standard and protein cleavage isotope dilution mass spectrometry
-
[86] Heudi, O., Barteau, S., Zimmer, D., Schmidt, J., Bill, K., Lehmann, N., et al. Towards absolute quantification of therapeutic monoclonal antibody in serum by LC−MS/MS using isotope-labeled antibody standard and protein cleavage isotope dilution mass spectrometry. Anal. Chem. 80 (2008), 4200–4207, 10.1021/ac800205s.
-
(2008)
Anal. Chem.
, vol.80
, pp. 4200-4207
-
-
Heudi, O.1
Barteau, S.2
Zimmer, D.3
Schmidt, J.4
Bill, K.5
Lehmann, N.6
-
87
-
-
84897548365
-
Effects of calibration approaches on the accuracy for LC-MS targeted quantification of therapeutic protein
-
[87] Nouri-Nigjeh, E., Zhang, M., Ji, T., Yu, H., An, B., Duan, X., et al. Effects of calibration approaches on the accuracy for LC-MS targeted quantification of therapeutic protein. Anal. Chem. 86 (2014), 3575–3584, 10.1021/ac5001477.
-
(2014)
Anal. Chem.
, vol.86
, pp. 3575-3584
-
-
Nouri-Nigjeh, E.1
Zhang, M.2
Ji, T.3
Yu, H.4
An, B.5
Duan, X.6
-
88
-
-
79955595074
-
mProphet: automated data processing and statistical validation for large-scale SRM experiments
-
[88] Reiter, L., Rinner, O., Picotti, P., Hüttenhain, R., Beck, M., Brusniak, M.-Y., et al. mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nat. Methods 8 (2011), 430–435, 10.1038/nmeth.1584.
-
(2011)
Nat. Methods
, vol.8
, pp. 430-435
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Hüttenhain, R.4
Beck, M.5
Brusniak, M.-Y.6
-
89
-
-
84862187489
-
neXtProt: a knowledge platform for human proteins
-
[89] Lane, L., Argoud-Puy, G., Britan, A., Cusin, I., Duek, P.D., Evalet, O., et al. neXtProt: a knowledge platform for human proteins. Nucleic Acids Res. 40 (2012), D76–D83, 10.1093/nar/gkr1179.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D76-D83
-
-
Lane, L.1
Argoud-Puy, G.2
Britan, A.3
Cusin, I.4
Duek, P.D.5
Evalet, O.6
-
90
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
[90] Sherry, S.T., dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29 (2001), 308–311, 10.1093/nar/29.1.308.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
91
-
-
84902552584
-
A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)
-
[91] Wu, T.-J., Shamsaddini, A., Pan, Y., Smith, K., Crichton, D.J., Simonyan, V., et al. A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE). Database, 2014, 2014, bau022, 10.1093/database/bau022.
-
(2014)
Database
, vol.2014
, pp. bau022
-
-
Wu, T.-J.1
Shamsaddini, A.2
Pan, Y.3
Smith, K.4
Crichton, D.J.5
Simonyan, V.6
-
92
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
[92] Anderson, L., Hunter, C.L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteom. 5 (2006), 573–588, 10.1074/mcp.M500331-MCP200.
-
(2006)
Mol. Cell. Proteom.
, vol.5
, pp. 573-588
-
-
Anderson, L.1
Hunter, C.L.2
-
93
-
-
20544459800
-
Absolute quantification strategies in proteomics based on mass spectrometry
-
[93] Brönstrup, M., Absolute quantification strategies in proteomics based on mass spectrometry. Expert Rev. Proteom. 1 (2004), 503–512, 10.1586/14789450.1.4.503.
-
(2004)
Expert Rev. Proteom.
, vol.1
, pp. 503-512
-
-
Brönstrup, M.1
-
94
-
-
8844233567
-
Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA)
-
[94] Anderson, N.L., Anderson, N.G., Haines, L.R., Hardie, D.B., Olafson, R.W., Pearson, T.W., Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J. Proteome Res. 3 (2004), 235–244, 10.1021/pr034086h.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 235-244
-
-
Anderson, N.L.1
Anderson, N.G.2
Haines, L.R.3
Hardie, D.B.4
Olafson, R.W.5
Pearson, T.W.6
-
95
-
-
84979523856
-
Multiplexed longitudinal measurement of protein biomarkers in DBS using an automated SISCAPA workflow
-
[95] Razavi, M., Anderson, N.L., Yip, R., Pope, M.E., Pearson, T.W., Multiplexed longitudinal measurement of protein biomarkers in DBS using an automated SISCAPA workflow. Bioanalysis 8 (2016), 1597–1609, 10.4155/bio-2016-0059.
-
(2016)
Bioanalysis
, vol.8
, pp. 1597-1609
-
-
Razavi, M.1
Anderson, N.L.2
Yip, R.3
Pope, M.E.4
Pearson, T.W.5
-
96
-
-
84860880032
-
Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma
-
[96] Kuhn, E., Whiteaker, J.R., Mani, D.R., Jackson, A.M., Zhao, L., Pope, M.E., et al. Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma. Mol. Cell. Proteom., 11, 2012, 10.1074/mcp.M111.013854.
-
(2012)
Mol. Cell. Proteom.
, vol.11
-
-
Kuhn, E.1
Whiteaker, J.R.2
Mani, D.R.3
Jackson, A.M.4
Zhao, L.5
Pope, M.E.6
-
97
-
-
84879942298
-
Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion
-
[97] Shi, T., Sun, X., Gao, Y., Fillmore, T.L., Schepmoes, A.A., Zhao, R., et al. Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion. J. Proteome Res. 12 (2013), 3353–3361, 10.1021/pr400178v.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 3353-3361
-
-
Shi, T.1
Sun, X.2
Gao, Y.3
Fillmore, T.L.4
Schepmoes, A.A.5
Zhao, R.6
-
98
-
-
84893547221
-
Depletion of abundant plasma proteins by poly(N-isopropylacrylamide-acrylic acid) hydrogel particles
-
[98] Such-Sanmartín, G., Ventura-Espejo, E., Jensen, O.N., Depletion of abundant plasma proteins by poly(N-isopropylacrylamide-acrylic acid) hydrogel particles. Anal. Chem. 86 (2014), 1543–1550, 10.1021/ac403749j.
-
(2014)
Anal. Chem.
, vol.86
, pp. 1543-1550
-
-
Such-Sanmartín, G.1
Ventura-Espejo, E.2
Jensen, O.N.3
-
99
-
-
33947093279
-
Selected ion fragmentation with a tandem quadrupole mass spectrometer
-
[99] Yost, R.A., Enke, C.G., Selected ion fragmentation with a tandem quadrupole mass spectrometer. J. Am. Chem. Soc. 100 (1978), 2274–2275, 10.1021/ja00475a072.
-
(1978)
J. Am. Chem. Soc.
, vol.100
, pp. 2274-2275
-
-
Yost, R.A.1
Enke, C.G.2
-
100
-
-
0023455726
-
Ion spray interface for combined liquid chromatography/atmospheric pressure ionization mass spectrometry
-
[100] Bruins, A.P., Covey, T.R., Henion, J.D., Ion spray interface for combined liquid chromatography/atmospheric pressure ionization mass spectrometry. Anal. Chem. 59 (1987), 2642–2646, 10.1021/ac00149a003.
-
(1987)
Anal. Chem.
, vol.59
, pp. 2642-2646
-
-
Bruins, A.P.1
Covey, T.R.2
Henion, J.D.3
-
101
-
-
0019620465
-
Quantitative mass spectrometry
-
[101] Markey, S.P., Quantitative mass spectrometry. Biol. Mass Spectrom. 8 (1981), 426–430, 10.1002/bms.1200080913.
-
(1981)
Biol. Mass Spectrom.
, vol.8
, pp. 426-430
-
-
Markey, S.P.1
-
102
-
-
10244256354
-
Isotope dilution–mass spectrometric quantification of specific proteins: model application with apolipoprotein A-I
-
[102] Barr, J.R., Maggio, V.L., Patterson, D.G., Cooper, G.R., Henderson, L.O., Turner, W.E., et al. Isotope dilution–mass spectrometric quantification of specific proteins: model application with apolipoprotein A-I. Clin. Chem. 42 (1996), 1676–1682.
-
(1996)
Clin. Chem.
, vol.42
, pp. 1676-1682
-
-
Barr, J.R.1
Maggio, V.L.2
Patterson, D.G.3
Cooper, G.R.4
Henderson, L.O.5
Turner, W.E.6
-
103
-
-
0346668199
-
Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards
-
[103] Barnidge, D.R., Dratz, E.A., Martin, T., Bonilla, L.E., Moran, L.B., Lindall, A., Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards. Anal. Chem. 75 (2003), 445–451, 10.1021/ac026154+.
-
(2003)
Anal. Chem.
, vol.75
, pp. 445-451
-
-
Barnidge, D.R.1
Dratz, E.A.2
Martin, T.3
Bonilla, L.E.4
Moran, L.B.5
Lindall, A.6
-
104
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
[104] Gerber, S.A., Rush, J., Stemman, O., Kirschner, M.W., Gygi, S.P., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. 100 (2003), 6940–6945, 10.1073/pnas.0832254100.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
105
-
-
84887359663
-
Mass spectrometric protein maps for biomarker discovery and clinical research
-
[105] Liu, Y., Hüttenhain, R., Collins, B., Aebersold, R., Mass spectrometric protein maps for biomarker discovery and clinical research. Expert Rev. Mol. Diagn 13 (2013), 811–825, 10.1586/14737159.2013.845089.
-
(2013)
Expert Rev. Mol. Diagn
, vol.13
, pp. 811-825
-
-
Liu, Y.1
Hüttenhain, R.2
Collins, B.3
Aebersold, R.4
-
106
-
-
79951530395
-
On the development of plasma protein biomarkers
-
[106] Surinova, S., Schiess, R., Hüttenhain, R., Cerciello, F., Wollscheid, B., Aebersold, R., On the development of plasma protein biomarkers. J. Proteome Res. 10 (2011), 5–16, 10.1021/pr1008515.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 5-16
-
-
Surinova, S.1
Schiess, R.2
Hüttenhain, R.3
Cerciello, F.4
Wollscheid, B.5
Aebersold, R.6
-
107
-
-
84939941663
-
Toward an integrated pipeline for protein biomarker development
-
[107] Drabovich, A.P., Martínez-Morillo, E., Diamandis, E.P., Toward an integrated pipeline for protein biomarker development. Biochim. Biophys. Acta Proteins Proteom. 1854 (2015), 677–686, 10.1016/j.bbapap.2014.09.006.
-
(2015)
Biochim. Biophys. Acta Proteins Proteom.
, vol.1854
, pp. 677-686
-
-
Drabovich, A.P.1
Martínez-Morillo, E.2
Diamandis, E.P.3
-
108
-
-
84870656540
-
Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer
-
[108] Gallien, S., Duriez, E., Crone, C., Kellmann, M., Moehring, T., Domon, B., Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer. Mol. Cell. Proteom. 11 (2012), 1709–1723, 10.1074/mcp.O112.019802.
-
(2012)
Mol. Cell. Proteom.
, vol.11
, pp. 1709-1723
-
-
Gallien, S.1
Duriez, E.2
Crone, C.3
Kellmann, M.4
Moehring, T.5
Domon, B.6
-
109
-
-
84887873381
-
Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring
-
[109] Law, K.P., Lim, Y.P., Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring. Expert Rev. Proteom. 10 (2013), 551–566, 10.1586/14789450.2013.858022.
-
(2013)
Expert Rev. Proteom.
, vol.10
, pp. 551-566
-
-
Law, K.P.1
Lim, Y.P.2
-
110
-
-
80052769923
-
Mass spectrometry-based proteomics using Q exactive, a high-performance benchtop quadrupole orbitrap mass spectrometer
-
M111.011015
-
[110] Michalski, A., Damoc, E., Hauschild, J.-P., Lange, O., Wieghaus, A., Makarov, A., et al. Mass spectrometry-based proteomics using Q exactive, a high-performance benchtop quadrupole orbitrap mass spectrometer. Mol. Cell. Proteom., 10, 2011, 10.1074/mcp.M111.011015 M111.011015.
-
(2011)
Mol. Cell. Proteom.
, vol.10
-
-
Michalski, A.1
Damoc, E.2
Hauschild, J.-P.3
Lange, O.4
Wieghaus, A.5
Makarov, A.6
-
111
-
-
77958595960
-
Isobaric protein and peptide quantification: perspectives and issues
-
[111] Treumann, A., Thiede, B., Isobaric protein and peptide quantification: perspectives and issues. Expert Rev. Proteom. 7 (2010), 647–653, 10.1586/epr.10.29.
-
(2010)
Expert Rev. Proteom.
, vol.7
, pp. 647-653
-
-
Treumann, A.1
Thiede, B.2
-
112
-
-
12444345515
-
Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
[112] Thompson, A., Schäfer, J., Kuhn, K., Kienle, S., Schwarz, J., Schmidt, G., et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75 (2003), 1895–1904, 10.1021/ac0262560.
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
-
113
-
-
84878272577
-
Neutron encoded labeling for peptide identification
-
[113] Rose, C.M., Merrill, A.E., Bailey, D.J., Hebert, A.S., Westphall, M.S., Coon, J.J., Neutron encoded labeling for peptide identification. Anal. Chem. 85 (2013), 5129–5137, 10.1021/ac400476w.
-
(2013)
Anal. Chem.
, vol.85
, pp. 5129-5137
-
-
Rose, C.M.1
Merrill, A.E.2
Bailey, D.J.3
Hebert, A.S.4
Westphall, M.S.5
Coon, J.J.6
-
114
-
-
84930468950
-
Large-Scale targeted proteomics using internal standard triggered-parallel reaction monitoring (IS-PRM)
-
[114] Gallien, S., Kim, S.Y., Domon, B., Large-Scale targeted proteomics using internal standard triggered-parallel reaction monitoring (IS-PRM). Mol. Cell. Proteom. 14 (2015), 1630–1644, 10.1074/mcp.O114.043968.
-
(2015)
Mol. Cell. Proteom.
, vol.14
, pp. 1630-1644
-
-
Gallien, S.1
Kim, S.Y.2
Domon, B.3
-
115
-
-
84909953587
-
Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics
-
[115] Ronsein, G.E., Pamir, N., von Haller, P.D., Kim, D.S., Oda, M.N., Jarvik, G.P., et al. Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics. J. Proteom. 113 (2015), 388–399, 10.1016/j.jprot.2014.10.017.
-
(2015)
J. Proteom.
, vol.113
, pp. 388-399
-
-
Ronsein, G.E.1
Pamir, N.2
von Haller, P.D.3
Kim, D.S.4
Oda, M.N.5
Jarvik, G.P.6
-
116
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
[116] Eng, J.K., Mccormack, A.L., Yates, J.R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. Am. Soc. Mass Spectrom. 5 (1994), 976–989, 10.1016/1044-0305(94)80016-2.
-
(1994)
Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
Mccormack, A.L.2
Yates, J.R.3
-
117
-
-
68049114653
-
Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean
-
[117] Panchaud, A., Scherl, A., Shaffer, S.A., von Haller, P.D., Kulasekara, H.D., Miller, S.I., et al. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal. Chem. 81 (2009), 6481–6488, 10.1021/ac900888s.
-
(2009)
Anal. Chem.
, vol.81
, pp. 6481-6488
-
-
Panchaud, A.1
Scherl, A.2
Shaffer, S.A.3
von Haller, P.D.4
Kulasekara, H.D.5
Miller, S.I.6
-
118
-
-
84857811076
-
Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification
-
[118] Weisbrod, C.R., Eng, J.K., Hoopmann, M.R., Baker, T., Bruce, J.E., Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification. J. Proteome Res. 11 (2012), 1621–1632, 10.1021/pr2008175.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 1621-1632
-
-
Weisbrod, C.R.1
Eng, J.K.2
Hoopmann, M.R.3
Baker, T.4
Bruce, J.E.5
-
119
-
-
34848862125
-
Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples
-
[119] Levin, Y., Schwarz, E., Wang, L., Leweke, F.M., Bahn, S., Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples. J. Sep. Sci. 30 (2007), 2198–2203, 10.1002/jssc.200700189.
-
(2007)
J. Sep. Sci.
, vol.30
, pp. 2198-2203
-
-
Levin, Y.1
Schwarz, E.2
Wang, L.3
Leweke, F.M.4
Bahn, S.5
-
120
-
-
84881477986
-
Multiplexed MS/MS for improved data-independent acquisition
-
[120] Egertson, J.D., Kuehn, A., Merrihew, G.E., Bateman, N.W., MacLean, B.X., Ting, Y.S., et al. Multiplexed MS/MS for improved data-independent acquisition. Nat. Methods 10 (2013), 744–746, 10.1038/nmeth.2528.
-
(2013)
Nat. Methods
, vol.10
, pp. 744-746
-
-
Egertson, J.D.1
Kuehn, A.2
Merrihew, G.E.3
Bateman, N.W.4
MacLean, B.X.5
Ting, Y.S.6
-
121
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
-
O111.016717
-
[121] Gillet, L.C., Navarro, P., Tate, S., Rost, H., Selevsek, N., Reiter, L., et al. Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol. Cell. Proteom., 11, 2012, 10.1074/mcp.O111.016717 O111.016717.
-
(2012)
Mol. Cell. Proteom.
, vol.11
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
Rost, H.4
Selevsek, N.5
Reiter, L.6
-
122
-
-
84876337044
-
Quantitative measurements of N -linked glycoproteins in human plasma by SWATH-MS
-
[122] Liu, Y., Hüttenhain, R., Surinova, S., Gillet, L.C., Mouritsen, J., Brunner, R., et al. Quantitative measurements of N -linked glycoproteins in human plasma by SWATH-MS. Proteomics 13 (2013), 1247–1256, 10.1002/pmic.201200417.
-
(2013)
Proteomics
, vol.13
, pp. 1247-1256
-
-
Liu, Y.1
Hüttenhain, R.2
Surinova, S.3
Gillet, L.C.4
Mouritsen, J.5
Brunner, R.6
-
123
-
-
84865654023
-
Good mass spectrometry and its place in good science
-
[123] Duncan, M.W., Good mass spectrometry and its place in good science. J. Mass Spectrom. 47 (2012), 795–809, 10.1002/jms.3038.
-
(2012)
J. Mass Spectrom.
, vol.47
, pp. 795-809
-
-
Duncan, M.W.1
-
124
-
-
67349170059
-
A stress test for mass spectrometry–based proteomics
-
[124] Aebersold, R., A stress test for mass spectrometry–based proteomics. Nat. Methods 6 (2009), 411–412, 10.1038/nmeth.f.255.
-
(2009)
Nat. Methods
, vol.6
, pp. 411-412
-
-
Aebersold, R.1
-
125
-
-
12244255362
-
Microfluidic chip for peptide analysis with an integrated HPLC column, sample enrichment column, and nanoelectrospray tip
-
[125] Yin, H., Killeen, K., Brennen, R., Sobek, D., Werlich, M., van de Goor, T., Microfluidic chip for peptide analysis with an integrated HPLC column, sample enrichment column, and nanoelectrospray tip. Anal. Chem. 77 (2005), 527–533, 10.1021/ac049068d.
-
(2005)
Anal. Chem.
, vol.77
, pp. 527-533
-
-
Yin, H.1
Killeen, K.2
Brennen, R.3
Sobek, D.4
Werlich, M.5
van de Goor, T.6
-
126
-
-
84878690034
-
Development and characterization of a novel plug and play liquid chromatography-mass spectrometry (LC-MS) source that automates connections between the capillary trap, column, and emitter
-
[126] Bereman, M.S., Hsieh, E.J., Corso, T.N., Van Pelt, C.K., MacCoss, M.J., Development and characterization of a novel plug and play liquid chromatography-mass spectrometry (LC-MS) source that automates connections between the capillary trap, column, and emitter. Mol. Cell. Proteom. 12 (2013), 1701–1708, 10.1074/mcp.O112.024893.
-
(2013)
Mol. Cell. Proteom.
, vol.12
, pp. 1701-1708
-
-
Bereman, M.S.1
Hsieh, E.J.2
Corso, T.N.3
Van Pelt, C.K.4
MacCoss, M.J.5
-
127
-
-
77954523086
-
Options and considerations when selecting a quantitative proteomics strategy
-
[127] Domon, B., Aebersold, R., Options and considerations when selecting a quantitative proteomics strategy. Nat. Biotechnol. 28 (2010), 710–721, 10.1038/nbt.1661.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 710-721
-
-
Domon, B.1
Aebersold, R.2
-
128
-
-
79959756824
-
Evaluation of protein loading techniques and improved separation in OFFGEL isoelectric focusing
-
[128] Keidel, E.-M., Dosch, D., Brunner, A., Kellermann, J., Lottspeich, F., Evaluation of protein loading techniques and improved separation in OFFGEL isoelectric focusing. Electrophoresis 32 (2011), 1659–1666, 10.1002/elps.201000544.
-
(2011)
Electrophoresis
, vol.32
, pp. 1659-1666
-
-
Keidel, E.-M.1
Dosch, D.2
Brunner, A.3
Kellermann, J.4
Lottspeich, F.5
-
129
-
-
84941061210
-
Ariadne's thread: a robust software solution leading to automated absolute and relative quantification of SRM data
-
[129] Nasso, S., Goetze, S., Martens, L., Ariadne's thread: a robust software solution leading to automated absolute and relative quantification of SRM data. J. Proteome Res. 14 (2015), 3779–3792, 10.1021/pr500996s.
-
(2015)
J. Proteome Res.
, vol.14
, pp. 3779-3792
-
-
Nasso, S.1
Goetze, S.2
Martens, L.3
-
130
-
-
84907033616
-
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
-
[130] Choi, M., Chang, C.-Y., Clough, T., Broudy, D., Killeen, T., MacLean, B., et al. MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments. Bioinformatics 30 (2014), 2524–2526, 10.1093/bioinformatics/btu305.
-
(2014)
Bioinformatics
, vol.30
, pp. 2524-2526
-
-
Choi, M.1
Chang, C.-Y.2
Clough, T.3
Broudy, D.4
Killeen, T.5
MacLean, B.6
|