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Volumn 7, Issue 5, 2010, Pages 647-653

Isobaric protein and peptide quantification: Perspectives and issues

Author keywords

IPTL; isobaric peptide termini labeling; isobaric tag for relative and absolute quantification; isobaric tagging; iTRAQ; multiplexing; quantitative proteomics; tandem mass tagging; TMT

Indexed keywords

LEUCINE; PEPTIDE; PROTEIN; PROTEOME;

EID: 77958595960     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.10.29     Document Type: Review
Times cited : (88)

References (30)
  • 1
    • 67651173106 scopus 로고    scopus 로고
    • Proteomics by mass spectrometry: Approaches, advances, and applications
    • Yates JR, Ruse CI, Nakorchevsky A. Proteomics by mass spectrometry: approaches, advances, and applications. Annu. Rev. Biomed. Eng. 11, 49-79 (2009).
    • (2009) Annu. Rev. Biomed. Eng. , vol.11 , pp. 49-79
    • Yates, J.R.1    Ruse, C.I.2    Nakorchevsky, A.3
  • 2
    • 48849097164 scopus 로고    scopus 로고
    • Quantitative proteomics as a new piece of the systems biology puzzle
    • Bachi A, Bonaldi T. Quantitative proteomics as a new piece of the systems biology puzzle. J. Proteomics 71(3), 357-367 (2008).
    • (2008) J. Proteomics , vol.71 , Issue.3 , pp. 357-367
    • Bachi, A.1    Bonaldi, T.2
  • 3
    • 40549126588 scopus 로고    scopus 로고
    • Alignment of LC-MS images, with applications to biomarker discovery and protein identifcation
    • Vandenbogaert M, Li-Thiao-Te S, Kaltenbach HM et al. Alignment of LC-MS images, with applications to biomarker discovery and protein identifcation. Proteomics 8(4), 650-672 (2008).
    • (2008) Proteomics , vol.8 , Issue.4 , pp. 650-672
    • Vandenbogaert, M.1    Li-Thiao-Te, S.2    Kaltenbach, H.M.3
  • 4
    • 38649095599 scopus 로고    scopus 로고
    • An assessment of software solutions for the ana lysis of mass spectrometry based quantitative proteomics data
    • Mueller LN, Brusniak MY, Mani DR, Aebersold R. An assessment of software solutions for the ana lysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 7(1), 51-61 (2008).
    • (2008) J Proteome Res. , vol.7 , Issue.1 , pp. 51-61
    • Mueller, L.N.1    Brusniak, M.Y.2    Mani, D.R.3    Aebersold, R.4
  • 5
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative ana lysis of complex protein mixtures using isotope-coded affnity tags
    • Gygi SP, Rist B, Gerber SA et al. Quantitative ana lysis of complex protein mixtures using isotope-coded affnity tags. Nat Biotechnol. 17(10), 994-999 (1999).
    • (1999) Nat Biotechnol. , vol.17 , Issue.10 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3
  • 6
    • 13244260803 scopus 로고    scopus 로고
    • A novel strategy for quantitative proteomics using isotope-coded protein labels
    • Schmidt A, Kellermann J, Lottspeich F. A novel strategy for quantitative proteomics using isotope-coded protein labels. Proteomics 5(1), 4-15 (2005).
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 4-15
    • Schmidt, A.1    Kellermann, J.2    Lottspeich, F.3
  • 7
    • 0037040607 scopus 로고    scopus 로고
    • Global internal standard technology for comparative proteomics
    • Chakraborty A, Regnier FE. Global internal standard technology for comparative proteomics. J. Chromatogr. A 949(1-2), 173-184 (2002).
    • (2002) J Chromatogr. A , vol.949 , Issue.1-2 , pp. 173-184
    • Chakraborty, A.1    Regnier, F.E.2
  • 8
    • 12444345515 scopus 로고    scopus 로고
    • Tandem mass tags: A novel quantifcation strategy for comparative analysis of complex protein mixtures by MS/MS
    • Thompson A, Schafer J, Kuhn K et al. Tandem mass tags: a novel quantifcation strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75(8), 1895-1904 (2003).
    • (2003) Anal. Chem. , vol.75 , Issue.8 , pp. 1895-1904
    • Thompson, A.1    Schafer, J.2    Kuhn, K.3
  • 9
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    • Ross PL, Huang YN, Marchese JN et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell Proteomics 3(12), 1154-1169 (2004).
    • (2004) Mol. Cell Proteomics , vol.3 , Issue.12 , pp. 1154-1169
    • Ross, P.L.1    Huang, Y.N.2    Marchese, J.N.3
  • 10
    • 33847174067 scopus 로고    scopus 로고
    • Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research
    • Wiese S, Reidegeld KA, Meyer HE, Warscheid B. Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research. Proteomics 7(3), 340-350 (2007).
    • (2007) Proteomics , vol.7 , Issue.3 , pp. 340-350
    • Wiese, S.1    Reidegeld, K.A.2    Meyer, H.E.3    Warscheid, B.4
  • 11
    • 77952057018 scopus 로고    scopus 로고
    • Comparison of a protein-level and peptide-level labeling strategy for quantitative proteomics of synaptosomes using isobaric tags
    • Engmann O, Campbell J, Ward M, Giese KP, Thompson AJ. Comparison of a protein-level and peptide-level labeling strategy for quantitative proteomics of synaptosomes using isobaric tags. J. Proteome Res. 9(5), 2725-2733 (2010).
    • (2010) J Proteome Res. , vol.9 , Issue.5 , pp. 2725-2733
    • Engmann, O.1    Campbell, J.2    Ward, M.3    Giese, K.P.4    Thompson, A.J.5
  • 12
    • 34548228858 scopus 로고    scopus 로고
    • CILAT - A new reagent for quantitative proteomics
    • Li S, Zeng D. CILAT-a new reagent for quantitative proteomics. Chem. Commun. (Camb.) 21, 2181-2183 (2007).
    • (2007) Chem. Commun. (Camb.) , vol.21 , pp. 2181-2183
    • Li, S.1    Zeng, D.2
  • 13
    • 61849088012 scopus 로고    scopus 로고
    • Improved CILAT reagents for quantitative proteomics
    • Zeng D, Li S. Improved CILAT reagents for quantitative proteomics. Bioorg. Med. Chem. Lett. 19(7), 2059-2061 (2009).
    • (2009) Bioorg. Med. Chem. Lett. , vol.19 , Issue.7 , pp. 2059-2061
    • Zeng, D.1    Li, S.2
  • 14
    • 77950398579 scopus 로고    scopus 로고
    • N,N-dimethyl leucines as novel isobaric tandem mass tags for quantitative proteomics and peptidomics
    • Xiang F, Ye H, Chen R, Fu Q, Li L. N,N-dimethyl leucines as novel isobaric tandem mass tags for quantitative proteomics and peptidomics. Anal. Chem. 82(7), 2817-2825 (2010).
    • (2010) Anal. Chem. , vol.82 , Issue.7 , pp. 2817-2825
    • Xiang, F.1    Ye, H.2    Chen, R.3    Fu, Q.4    Li, L.5
  • 15
  • 16
    • 29744460317 scopus 로고    scopus 로고
    • High amplitude short time excitation: A method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer
    • Cunningham C Jr, Glish GL, Burinsky DJ. High amplitude short time excitation: a method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer. J. Am. Soc. Mass Spectrom. 17(1), 81-84 (2006).
    • (2006) J. Am. Soc Mass Spectrom. , vol.17 , Issue.1 , pp. 81-84
    • Cunningham Jr., C.1    Glish, G.L.2    Burinsky, D.J.3
  • 17
    • 55249089723 scopus 로고    scopus 로고
    • Electron transfer dissociation of iTRAQ labeled peptide ions
    • Han H, Pappin DJ, Ross PL, McLuckey SA. Electron transfer dissociation of iTRAQ labeled peptide ions. J. Proteome Res. 7(9), 3643-3648 (2008).
    • (2008) J Proteome Res. , vol.7 , Issue.9 , pp. 3643-3648
    • Han, H.1    Pappin, D.J.2    Ross, P.L.3    McLuckey, S.A.4
  • 18
    • 50849096388 scopus 로고    scopus 로고
    • Peptide and protein quantifcation using iTRAQ with electron transfer dissociation
    • Phanstiel D, Zhang Y, Marto JA, Coon JJ. Peptide and protein quantifcation using iTRAQ with electron transfer dissociation. J. Am. Soc. Mass Spectrom. 19(9), 1255-1262 (2008).
    • (2008) J. Am. Soc. Mass Spectrom. , vol.19 , Issue.9 , pp. 1255-1262
    • Phanstiel, D.1    Zhang, Y.2    Marto, J.A.3    Coon, J.J.4
  • 19
    • 63649139204 scopus 로고    scopus 로고
    • Peptide quantifcation using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry
    • Phanstiel D, Unwin R, McAlister GC, Coon JJ. Peptide quantifcation using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry Anal. Chem. 81(4), 1693-1698 (2009).
    • (2009) Anal. Chem. , vol.81 , Issue.4 , pp. 1693-1698
    • Phanstiel, D.1    Unwin, R.2    McAlister, G.C.3    Coon, J.J.4
  • 20
    • 67649563273 scopus 로고    scopus 로고
    • Quantifcation of post-translationally modifed peptides of bovine α-crystallin using tandem mass tags and electron transfer dissociation
    • Viner RI, Zhang T, Second T, Zabrouskov V. Quantifcation of post-translationally modifed peptides of bovine α-crystallin using tandem mass tags and electron transfer dissociation. J. Proteomics 72(5), 874-885 (2009).
    • (2009) J Proteomics , vol.72 , Issue.5 , pp. 874-885
    • Viner, R.I.1    Zhang, T.2    Second, T.3    Zabrouskov, V.4
  • 21
    • 36348987990 scopus 로고    scopus 로고
    • ITRAQ reagent-based quantitative proteomic ana lysis on a linear ion trap mass spectrometer
    • Griffn TJ, Xie H, Bandhakavi S et al. iTRAQ reagent-based quantitative proteomic ana lysis on a linear ion trap mass spectrometer. J. Proteome Res. 6(11), 4200-4209 (2007).
    • (2007) J Proteome Res. , vol.6 , Issue.11 , pp. 4200-4209
    • Griffn, T.J.1    Xie, H.2    Bandhakavi, S.3
  • 22
    • 52649098504 scopus 로고    scopus 로고
    • Robust and sensitive iTRAQ quantifcation on an LTQ Orbitrap mass spectrometer
    • Bantscheff M, Boesche M, Eberhard D et al. Robust and sensitive iTRAQ quantifcation on an LTQ Orbitrap mass spectrometer. Mol. Cell Proteomics 7(9), 1702-1713 (2008).
    • (2008) Mol. Cell Proteomics , vol.7 , Issue.9 , pp. 1702-1713
    • Bantscheff, M.1    Boesche, M.2    Eberhard, D.3
  • 23
    • 58149389534 scopus 로고    scopus 로고
    • Hybridization of pulsed-Q dissociation and collision-activated dissociation in linear ion trap mass spectrometer for iTRAQ quantitation
    • Guo T, Gan CS, Zhang H et al. Hybridization of pulsed-Q dissociation and collision-activated dissociation in linear ion trap mass spectrometer for iTRAQ quantitation. J. Proteome Res. 7(11), 4831-4840 (2008).
    • (2008) J Proteome Res. , vol.7 , Issue.11 , pp. 4831-4840
    • Guo, T.1    Gan, C.S.2    Zhang, H.3
  • 24
    • 70349973075 scopus 로고    scopus 로고
    • Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation
    • Boja ES, Phillips D, French SA, Harris RA, Balaban RS. Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation. J. Proteome Res. 8(10), 4665-4675 (2009).
    • (2009) J Proteome Res. , vol.8 , Issue.10 , pp. 4665-4675
    • Boja, E.S.1    Phillips, D.2    French, S.A.3    Harris, R.A.4    Balaban, R.S.5
  • 25
    • 34548336772 scopus 로고    scopus 로고
    • Higher-energy C-trap dissociation for peptide modifcation analysis
    • Olsen JV, Macek B, Lange O et al. Higher-energy C-trap dissociation for peptide modifcation analysis. Nat Methods 4(9), 709-712 (2007).
    • (2007) Nat Methods , vol.4 , Issue.9 , pp. 709-712
    • Olsen, J.V.1    MacEk, B.2    Lange, O.3
  • 26
    • 70349974261 scopus 로고    scopus 로고
    • High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: A new mass spectrometric method combining the benefts of all
    • Kocher T, Pichler P, Schutzbier M et al. High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: a new mass spectrometric method combining the benefts of all. J. Proteome Res. 8(10), 4743-4752 (2009).
    • (2009) J Proteome Res. , vol.8 , Issue.10 , pp. 4743-4752
    • Kocher, T.1    Pichler, P.2    Schutzbier, M.3
  • 27
    • 33845435463 scopus 로고    scopus 로고
    • The utility of ETD mass spectrometry in proteomic analysis
    • Mikesh LM, Ueberheide B, Chi A et al. The utility of ETD mass spectrometry in proteomic analysis. Biochim. Biophys. Acta 1764(12), 1811-1822 (2006).
    • (2006) Biochim. Biophys. Acta , vol.1764 , Issue.12 , pp. 1811-1822
    • Mikesh, L.M.1    Ueberheide, B.2    Chi, A.3
  • 28
    • 70449412362 scopus 로고    scopus 로고
    • ITRAQ underestimation in simple and complex mixtures: 'The good, the bad and the ugly'
    • Ow SY, Salim M, Noirel J et al. iTRAQ underestimation in simple and complex mixtures: 'the good, the bad and the ugly'. J. Proteome Res. 8(11), 5347-5355 (2009).
    • (2009) J Proteome Res. , vol.8 , Issue.11 , pp. 5347-5355
    • Ow, S.Y.1    Salim, M.2    Noirel, J.3
  • 29
    • 44349164578 scopus 로고    scopus 로고
    • Analysis of iTRAQ data using Mascot and Peaks quantifcation algorithms. Brief Funct
    • Lacerda CM, Xin L, Rogers I, Reardon KF. Analysis of iTRAQ data using Mascot and Peaks quantifcation algorithms. Brief Funct. Genomic Proteomic 7(2), 119-126 (2008).
    • (2008) Genomic Proteomic , vol.7 , Issue.2 , pp. 119-126
    • Lacerda, C.M.1    Xin, L.2    Rogers, I.3    Reardon, K.F.4
  • 30
    • 44349129845 scopus 로고    scopus 로고
    • Lee KH. iTRAQPak: An R based ana lysis and visualization package for 8-plex isobaric protein expression data. Brief Funct
    • DAscenzo M, Choe L, Lee KH. iTRAQPak: an R based ana lysis and visualization package for 8-plex isobaric protein expression data. Brief Funct. Genomic Proteomic 7(2), 127-135 (2008).
    • (2008) Genomic Proteomic , vol.7 , Issue.2 , pp. 127-135
    • Dascenzo, M.1    Choe, L.2


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