-
1
-
-
17444419756
-
Prediction of peptide retention at different HPLC conditions from multiple linear regression models
-
Baczek, T., Wiczling, P., Marszall, M., Heyden, Y.V., and, Kaliszan, R., 2005. Prediction of peptide retention at different HPLC conditions from multiple linear regression models. J. Proteome Res. 4: 555 - 563.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 555-563
-
-
Baczek, T.1
Wiczling, P.2
Marszall, M.3
Heyden, Y.V.4
Kaliszan, R.5
-
2
-
-
0020427613
-
The isolation of peptides by high-performance liquid chromatography using predicted elution positions
-
Browne, C.A., Bennett, H.P., and, Solomon, S., 1982. The isolation of peptides by high-performance liquid chromatography using predicted elution positions. Anal Biochem. 124: 201 - 208.
-
(1982)
Anal Biochem.
, vol.124
, pp. 201-208
-
-
Browne, C.A.1
Bennett, H.P.2
Solomon, S.3
-
3
-
-
51949083217
-
Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics
-
Dwivedi, R.C., Spicer, V., Harder, M., Antonovici, M., Ens, W., Standing, K.G., Wilkins, J.A., and, Krokhin, O.V., 2008. Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics. Anal Chem. 80: 7036 - 7042.
-
(2008)
Anal Chem.
, vol.80
, pp. 7036-7042
-
-
Dwivedi, R.C.1
Spicer, V.2
Harder, M.3
Antonovici, M.4
Ens, W.5
Standing, K.G.6
Wilkins, J.A.7
Krokhin, O.V.8
-
4
-
-
33751227869
-
Liquid chromatography at critical conditions: Comprehensive approach to sequence-dependent retention time prediction
-
Gorshkov, A.V., Tarasova, I.A., Evreinov, V.V., Savitski, M.M., Nielsen, M.L., Zubarev, R.A., and, Gorshkov, M.V., 2006. Liquid chromatography at critical conditions: Comprehensive approach to sequence-dependent retention time prediction. Anal Chem. 78: 7770 - 7777.
-
(2006)
Anal Chem.
, vol.78
, pp. 7770-7777
-
-
Gorshkov, A.V.1
Tarasova, I.A.2
Evreinov, V.V.3
Savitski, M.M.4
Nielsen, M.L.5
Zubarev, R.A.6
Gorshkov, M.V.7
-
5
-
-
0022452397
-
Prediction of peptide retention times in reversed-phase high-performance liquid chromatography. I. Determination of retention coefficients of amino acid residues of model synthetic peptides
-
Guo, D., Mant, C.T., Taneja, A.K., Parker, R., and, Hodges, R.S., 1986. Prediction of peptide retention times in reversed-phase high-performance liquid chromatography. I. Determination of retention coefficients of amino acid residues of model synthetic peptides. J. Chromatogr. 359: 499 - 517. (Pubitemid 16061421)
-
(1986)
Journal of Chromatography
, vol.359
, pp. 499-517
-
-
Guo, D.1
Mant, C.T.2
Taneja, A.K.3
-
6
-
-
33751208935
-
Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300- and 100-A pore size C18 sorbents
-
Krokhin, O.V., 2006. Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300- and 100-A pore size C18 sorbents. Anal Chem. 78: 7785 - 7795.
-
(2006)
Anal Chem.
, vol.78
, pp. 7785-7795
-
-
Krokhin, O.V.1
-
7
-
-
70649103961
-
Peptide retention standards and hydrophobicity indexes in reversed-phase high-performance liquid chromatography of peptides
-
Krokhin, O.V., and, Spicer, V., 2009. Peptide retention standards and hydrophobicity indexes in reversed-phase high-performance liquid chromatography of peptides. Anal Chem. 81: 9522 - 9530.
-
(2009)
Anal Chem.
, vol.81
, pp. 9522-9530
-
-
Krokhin, O.V.1
Spicer, V.2
-
8
-
-
0242611620
-
Characterizing degradation products of peptides containing N-terminal Cys residues by (off-line high-performance liquid chromatography)/matrix-assisted laser desorption/ionization quadrupole time-of-flight measurements
-
Krokhin, O.V., Ens, W., and, Standing, K.G., 2003. Characterizing degradation products of peptides containing N-terminal Cys residues by (off-line high-performance liquid chromatography)/matrix-assisted laser desorption/ionization quadrupole time-of-flight measurements. Rapid Commun. Mass Spectrom. 17: 2528 - 2534.
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, pp. 2528-2534
-
-
Krokhin, O.V.1
Ens, W.2
Standing, K.G.3
-
9
-
-
5744223586
-
An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS
-
Krokhin, O.V., Craig, R., Spicer, V., Ens, W., Standing, K.G., Beavis, R.C., and, Wilkins, J.A., 2004. An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS. Mol. Cell Proteomics 3: 908 - 919.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 908-919
-
-
Krokhin, O.V.1
Craig, R.2
Spicer, V.3
Ens, W.4
Standing, K.G.5
Beavis, R.C.6
Wilkins, J.A.7
-
10
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
Lange, V., Picotti, P., Domon, B., and, Aebersold, R., 2008. Selected reaction monitoring for quantitative proteomics: A tutorial. Mol. Syst. Biol. 4: 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
11
-
-
66149134917
-
MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions
-
Mead, J.A., Bianco, L., Ottone, V., Barton, C., Kay, R.G., Lilley, K.S., Bond, N.J., and, Bessant, C., 2009. MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions. Mol. Cell Proteomics 8: 696 - 705.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 696-705
-
-
Mead, J.A.1
Bianco, L.2
Ottone, V.3
Barton, C.4
Kay, R.G.5
Lilley, K.S.6
Bond, N.J.7
Bessant, C.8
-
12
-
-
0018990802
-
Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition
-
Meek, J.L., 1980. Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition. Proc. Natl. Acad. Sci. U.S.A. 3: 1632 - 1636.
-
(1980)
Proc. Natl. Acad. Sci. U.S.A.
, vol.3
, pp. 1632-1636
-
-
Meek, J.L.1
-
13
-
-
33746448330
-
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
-
Petritis, K., Kangas, L.J., Yan, B., Monroe, M.E., Strittmatter, E.F., Qian, W.J., Adkins, J.N., Moore, R.J., Xu, Y., Lipton, M.S., Camp, D.G. 2nd, and, Smith, R.D., 2006. Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information. Anal Chem. 78: 5026 - 5039.
-
(2006)
Anal Chem.
, vol.78
, pp. 5026-5039
-
-
Petritis, K.1
Kangas, L.J.2
Yan, B.3
Monroe, M.E.4
Strittmatter, E.F.5
Qian, W.J.6
Adkins, J.N.7
Moore, R.J.8
Xu, Y.9
Lipton, M.S.10
Camp II, D.G.11
Smith, R.D.12
-
14
-
-
33845436279
-
Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks
-
Shinoda, K., Sugimoto, M., Yachie, N., Sugiyama, N., Masuda, T., Robert, M., Soga, T., and, Tomita, M., 2006. Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks. J. Proteome Res. 5: 3312 - 3317.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 3312-3317
-
-
Shinoda, K.1
Sugimoto, M.2
Yachie, N.3
Sugiyama, N.4
Masuda, T.5
Robert, M.6
Soga, T.7
Tomita, M.8
-
15
-
-
36448943278
-
Sequence-specific retention calculator. A family of peptide retention time prediction algorithms in reversed-phase HPLC: Applicability to various chromatographic conditions and columns
-
Spicer, V., Yamchuk, A., Cortens, J., Sousa, S., Ens, W., Standing, K. G., Wilkins, J.A., and, Krokhin, O.V., 2007. Sequence-specific retention calculator. A family of peptide retention time prediction algorithms in reversed-phase HPLC: Applicability to various chromatographic conditions and columns. Anal Chem. 79: 8762 - 8768.
-
(2007)
Anal Chem.
, vol.79
, pp. 8762-8768
-
-
Spicer, V.1
Yamchuk, A.2
Cortens, J.3
Sousa, S.4
Ens, W.5
Standing, K.G.6
Wilkins, J.A.7
Krokhin, O.V.8
-
16
-
-
4444350538
-
Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry
-
Strittmatter, E.F., Kangas, L.J., Petritis, K., Mottaz, H.M., Anderson, G.A., Shen, Y., Jacobs, J.M., Camp, D.G. 2nd, and, Smith, R.D., 2004. Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry. J. Proteome Res. 3: 760 - 769.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 760-769
-
-
Strittmatter, E.F.1
Kangas, L.J.2
Petritis, K.3
Mottaz, H.M.4
Anderson, G.A.5
Shen, Y.6
Jacobs, J.M.7
Camp II, D.G.8
Smith, R.D.9
-
17
-
-
77956969872
-
-
The most complete description of the SSRCalc model.
-
Krokhin, 2006. See above. The most complete description of the SSRCalc model.
-
(2006)
-
-
Krokhin1
-
18
-
-
77956948102
-
-
First version of the SSRCalc model.
-
Krokhin et al., 2004. See above. First version of the SSRCalc model.
-
(2004)
-
-
Krokhin1
-
19
-
-
77956952628
-
-
Introduction of standard P1-P6 peptide mixture and new hydrophobicity scales.
-
Krokhin, and, Spicer, 2009. See above. Introduction of standard P1-P6 peptide mixture and new hydrophobicity scales.
-
(2009)
-
-
Krokhin1
Spicer2
-
20
-
-
77956958561
-
-
SSRCalc online version.
-
http://hs2.proteome.ca/SSRCalc/SSRCalc33B SSRCalc online version.
-
-
-
-
21
-
-
77956963958
-
-
TheorChromo online version.
-
http://theorchromo.ru/ TheorChromo online version.
-
-
-
-
22
-
-
77956972758
-
-
NET Prediction Utility download site.
-
http://omics.pnl.gov/software/NETPredictionUtility.php NET Prediction Utility download site.
-
-
-
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