-
1
-
-
0037337307
-
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
-
Taylor, C. F.; et al. A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat. Biotech. 2003, 21, 247-254.
-
(2003)
Nat. Biotech.
, vol.21
, pp. 247-254
-
-
Taylor, C.F.1
-
2
-
-
2942592334
-
Enabling proteomics: The need for an extendable 'workbench' for user-configurable solutions
-
Beynon, R. J. Enabling proteomics: The need for an extendable 'workbench' for user-configurable solutions. Comput. Funct. Genom. 2004, 5, 52-55.
-
(2004)
Comput. Funct. Genom.
, vol.5
, pp. 52-55
-
-
Beynon, R.J.1
-
3
-
-
1242339568
-
Common interchange standards for proteomics data: Public availability of tools and schema
-
Orchard, S.; Hermjakob, H.; Julian, R. K.; Runte, K.; Sherman, D.; Wojcik, J.; Zhu, W.; Apweiler, R. Common interchange standards for proteomics data: Public availability of tools and schema. Proteomics 2004, 4, 490-491.
-
(2004)
Proteomics
, vol.4
, pp. 490-491
-
-
Orchard, S.1
Hermjakob, H.2
Julian, R.K.3
Runte, K.4
Sherman, D.5
Wojcik, J.6
Zhu, W.7
Apweiler, R.8
-
4
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R.; Mann, M. Mass spectrometry-based proteomics. Nature 2003, 422, 198-207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
5
-
-
0037621728
-
Progress in Establishing Common Standards for Exchanging Proteomics Data: The second meeting of the HUPO Proteomics Standards Initiative
-
Orchard, S.; Kersey, P.; Zhu, W.; Montecchi-Palazzi, L.; Hermjakob, H.; Apweiler, R. Progress in Establishing Common Standards for Exchanging Proteomics Data: the second meeting of the HUPO Proteomics Standards Initiative. Comput. Funct. Genom. 2003, 4, 203-206.
-
(2003)
Comput. Funct. Genom.
, vol.4
, pp. 203-206
-
-
Orchard, S.1
Kersey, P.2
Zhu, W.3
Montecchi-Palazzi, L.4
Hermjakob, H.5
Apweiler, R.6
-
6
-
-
4444294399
-
Proteome Annotations and Identifications of the Human Pulmonary Fibroblast
-
Malmström, J.; Larsen, K.; Malmström, L.; Tufvesson, E.; Parker, K.; Marchese, J.; Williamson, B.; Hattan, S.; Patterson, D.; Martin, S.; Graber, A.; Juhasz, P.; Westergren-Thorsson, G.; Marko-Varga, G. Proteome Annotations and Identifications of the Human Pulmonary Fibroblast. J. Proteome Res. 2004, 3, 525-537.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 525-537
-
-
Malmström, J.1
Larsen, K.2
Malmström, L.3
Tufvesson, E.4
Parker, K.5
Marchese, J.6
Williamson, B.7
Hattan, S.8
Patterson, D.9
Martin, S.10
Graber, A.11
Juhasz, P.12
Westergren-Thorsson, G.13
Marko-Varga, G.14
-
7
-
-
0036470450
-
What does it mean to identify a protein in proteomics?
-
Rappsilber, J.; Mann, M. What does it mean to identify a protein in proteomics? Trends Biochem. Sci. 2002, 27, 74-78.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 74-78
-
-
Rappsilber, J.1
Mann, M.2
-
8
-
-
0035241690
-
Mass spectrometry in proteomics
-
Aebersold, R.; Goodlett, D. R. Mass spectrometry in proteomics. Chem. Rev. 2001, 101, 269-295.
-
(2001)
Chem. Rev.
, vol.101
, pp. 269-295
-
-
Aebersold, R.1
Goodlett, D.R.2
-
9
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyo D.; Beavis R. C. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 2003, 75, 768-774.
-
(2003)
Anal. Chem.
, vol.75
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
10
-
-
0035107717
-
Efficiency of database search for identification of mutated and modified proteins via mass spectrometry
-
Pevzner, P. A.; Mulyukov, Z.; Dancik, V.; Tang, C. L. Efficiency of database search for identification of mutated and modified proteins via mass spectrometry. Genome Res. 2001, 11, 290-299.
-
(2001)
Genome Res.
, vol.11
, pp. 290-299
-
-
Pevzner, P.A.1
Mulyukov, Z.2
Dancik, V.3
Tang, C.L.4
-
11
-
-
0035150398
-
Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases
-
Mann, M.; Pandey, A. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases. Trends Biochem. Sci. 2001, 26, 54-61.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 54-61
-
-
Mann, M.1
Pandey, A.2
-
12
-
-
0031865293
-
Protein identification using mass spectrometric information
-
Fenyö, D.; Qin, J.; Chait B. T. Protein identification using mass spectrometric information. Electrophoresis 1998, 19, 998-1005.
-
(1998)
Electrophoresis
, vol.19
, pp. 998-1005
-
-
Fenyö, D.1
Qin, J.2
Chait, B.T.3
-
13
-
-
0034536341
-
Selective gas-phase cleavage at the peptide bond C-terminal to aspartic acid in fixed-charge derivatives of Asp-containing peptides
-
Gu, C.; Tsaprailis, G.; Breci, L.; Wysocki, V. H. Selective gas-phase cleavage at the peptide bond C-terminal to aspartic acid in fixed-charge derivatives of Asp-containing peptides. Anal. Chem. 2000, 72, 5804-13.
-
(2000)
Anal. Chem.
, vol.72
, pp. 5804-5813
-
-
Gu, C.1
Tsaprailis, G.2
Breci, L.3
Wysocki, V.H.4
-
14
-
-
0034501099
-
Mobile and localized protons: A framework for understanding peptide dissociation
-
Wysocki, V. H.; Tsaprailis, G.; Smith, L. L; Breci, L. A. Mobile and localized protons: a framework for understanding peptide dissociation. J Mass Spectrom. 2000, 35, 1399-406.
-
(2000)
J Mass Spectrom.
, vol.35
, pp. 1399-1406
-
-
Wysocki, V.H.1
Tsaprailis, G.2
Smith, L.L.3
Breci, L.A.4
-
15
-
-
1442324456
-
Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides
-
Tabb, D. L.; Huang, Y.; Wysocki, V. H.; Yates, J. R., 3rd. Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides. Anal. Chem. 2004, 76, 1243-8.
-
(2004)
Anal. Chem.
, vol.76
, pp. 1243-1248
-
-
Tabb, D.L.1
Huang, Y.2
Wysocki, V.H.3
Yates III, J.R.4
-
16
-
-
0742305695
-
Intensity-Based Protein Identification by Machine Learning from a Library of Tandem Mass Spectra
-
Elias, J. E.; Gibbons, F. D.; King, O. D.; Roth, F. P.; Gygi, S. P. Intensity-Based Protein Identification by Machine Learning from a Library of Tandem Mass Spectra. Nat. Biotech. 2004, 22, 214-219.
-
(2004)
Nat. Biotech.
, vol.22
, pp. 214-219
-
-
Elias, J.E.1
Gibbons, F.D.2
King, O.D.3
Roth, F.P.4
Gygi, S.P.5
-
17
-
-
0037317111
-
Intensity-Based Scorer for Tandem Mass Spectrometry
-
Havilio, M.; Haddad, Y.; Similansky, Z. Intensity-Based Scorer for Tandem Mass Spectrometry. Anal. Chem. 2003, 75, 435-444.
-
(2003)
Anal. Chem.
, vol.75
, pp. 435-444
-
-
Havilio, M.1
Haddad, Y.2
Similansky, Z.3
-
18
-
-
0036211823
-
RADARS a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification and archives data in a relational database
-
Field, H. I.; Fenyö, D.; Beavis, R. C. RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification and archives data in a relational database. Proteomics 2002, 2, 36-47.
-
(2002)
Proteomics
, vol.2
, pp. 36-47
-
-
Field, H.I.1
Fenyö, D.2
Beavis, R.C.3
-
19
-
-
0141955057
-
A Method for Reducing the Time Required to Match Protein Sequences with Tandem Mass Spectra Rapid Commun
-
Craig, R.; Beavis, R. C. A Method for Reducing the Time Required to Match Protein Sequences with Tandem Mass Spectra, Rapid Commun. Mass Spectrom. 2003, 17, 2310-2316.
-
(2003)
Mass Spectrom.
, vol.17
, pp. 2310-2316
-
-
Craig, R.1
Beavis, R.C.2
-
20
-
-
2442526682
-
SILVER Helps Assign Peptides to Tandem Mass Spectra Using Intensity-Based Scoring
-
Gibbons, D. D.; Elias, J. E.; Gygi, S. P.; Roth, F. P. SILVER Helps Assign Peptides to Tandem Mass Spectra Using Intensity-Based Scoring. J. Am. Soc. Mass Spectrom. 2004, 15, 910-912.
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, pp. 910-912
-
-
Gibbons, D.D.1
Elias, J.E.2
Gygi, S.P.3
Roth, F.P.4
-
21
-
-
0037434994
-
Constellations in a cellular universe
-
Aebersold, R. Constellations in a cellular universe. Nature 2003, 422, 115-6.
-
(2003)
Nature
, vol.422
, pp. 115-116
-
-
Aebersold, R.1
-
22
-
-
11144292962
-
-
http://www.apache.org.
-
-
-
-
23
-
-
11144352560
-
-
Wall, L.; Christiansen, T.; Schwartz, R. L. Programming Perl, O'Reilly, Sebastopol, CA, p 645.
-
Wall, L.; Christiansen, T.; Schwartz, R. L. Programming Perl, O'Reilly, Sebastopol, CA, p 645.
-
-
-
-
24
-
-
11144305517
-
-
http://www.w3.org.
-
-
-
-
25
-
-
11144345431
-
-
http://www.thegpm.org.
-
-
-
-
26
-
-
0032938036
-
The Biopolymer Markup Language
-
Fenyö, D. The Biopolymer Markup Language. Bioinformatics 1999, 15, 339-340.
-
(1999)
Bioinformatics
, vol.15
, pp. 339-340
-
-
Fenyö, D.1
-
27
-
-
11144347246
-
-
http://www.gaml.org.
-
-
-
-
28
-
-
2442706422
-
An Overview of ENSEMBL
-
Birney, E.; et al. An Overview of ENSEMBL. Genome Res. 2004, 14, 925-928.
-
(2004)
Genome Res.
, vol.14
, pp. 925-928
-
-
Birney, E.1
-
29
-
-
11144281513
-
-
http://www.tigr.org.
-
-
-
-
30
-
-
0037252705
-
Database resources of the National Center for Biotechnology
-
Wheeler, D. L.; Church, D. M.; Federhen, S.; Lash, A. E.; Madden, T. L.; Pontius, J. U.; Schuler, G. D.; Schriml, L. M.; Sequeira, E.; Tatusova, T. A.; Wagner, L. Database resources of the National Center for Biotechnology. Nucleic Acids Res. 2003, 31, 28-33.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 28-33
-
-
Wheeler, D.L.1
Church, D.M.2
Federhen, S.3
Lash, A.E.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Sequeira, E.9
Tatusova, T.A.10
Wagner, L.11
-
31
-
-
11144342903
-
-
http://www.mysql.org.
-
-
-
|