-
2
-
-
0036171359
-
De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging
-
Cagney, G. and Emili, A. (2002) De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging. Nat. Biotechnol., 20, 163-170.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 163-170
-
-
Cagney, G.1
Emili, A.2
-
3
-
-
0037040607
-
Global internal standard technology for comparative proteomics
-
Chakraborty, A. and Regnier, F. (2002) Global internal standard technology for comparative proteomics. J. Chromatogr. A, 949, 173-184.
-
(2002)
J. Chromatogr. A
, vol.949
, pp. 173-184
-
-
Chakraborty, A.1
Regnier, F.2
-
4
-
-
0000929505
-
The hydrophobic moment detects periodicity in protein hydrophobicity
-
Eisenberg, D., Weiss, R.M. and Terwilliger, T.C. (1984) The hydrophobic moment detects periodicity in protein hydrophobicity. Proc. Natl. Acad. Sci. USA, 81, 140-144.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 140-144
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
5
-
-
0348142993
-
Changes in the protein expression of yeast as a function of carbon source
-
Gao, J., Opiteck, G.J., Friedrichs,M., Dongre, A.R. and Hefta, S.A. (2003) Changes in the protein expression of yeast as a function of carbon source. J. Proteome Res., 2, 643-649.
-
(2003)
J. Proteome Res.
, vol.2
, pp. 643-649
-
-
Gao, J.1
Opiteck, G.J.2
Friedrichs, M.3
Dongre, A.R.4
Hefta, S.A.5
-
6
-
-
0032875697
-
Quantitative analysis of protein mixtures using isotope coded affinity tag
-
Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H. and Aebersold, R. (1999) Quantitative analysis of protein mixtures using isotope coded affinity tag. Nat. Biotechnol., 17, 994-999.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
7
-
-
23944472666
-
Comprehensive label-free method for the relative quantification of proteins from biological samples
-
Higgs, R.E., Knierman, M.D., Gelfanova, V., Butler, J.P. and Hale, J.E. (2005) Comprehensive label-free method for the relative quantification of proteins from biological samples. J. Proteome Res., 4, 1442-1450.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1442-1450
-
-
Higgs, R.E.1
Knierman, M.D.2
Gelfanova, V.3
Butler, J.P.4
Hale, J.E.5
-
8
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimateion of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J. and Mann, M. (2005) Exponentially modified protein abundance index (emPAI) for estimateion of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell Proteomics, 4, 1265-1272.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
Mann, M.7
-
9
-
-
21744435622
-
Scoring proteomes with proteotypic peptide probes
-
Kuster, B., Schirle, M., Mallick, P. and Aebersold, R. (2005) Scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol., 6, 577-583.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 577-583
-
-
Kuster, B.1
Schirle, M.2
Mallick, P.3
Aebersold, R.4
-
10
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J. and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
11
-
-
33645463331
-
MapQuant: Open-source software for large-scale protein quantification
-
Leptos, K.C., Sarracino, D.A., Jaffe, J.D., Krastins, B. and Church, G.M. (2006) MapQuant: Open-source software for large-scale protein quantification. Proteomics, 157, 1770-1782.
-
(2006)
Proteomics
, vol.157
, pp. 1770-1782
-
-
Leptos, K.C.1
Sarracino, D.A.2
Jaffe, J.D.3
Krastins, B.4
Church, G.M.5
-
12
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H., Sadygov, R.G. and Yates, J.R.,3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem., 76, 4193-4201.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
13
-
-
27644555055
-
Interpretation of shotgun proteomic data: The protein inference problem
-
Nesvizhskii, A.I. and Aebersold, R. (2005) Interpretation of shotgun proteomic data: The protein inference problem. Mol. Cell Proteomics, 4, 1419-1440.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
14
-
-
0242267500
-
Predicting intrinsic disorder from amino acid sequence
-
Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., Brown, C.J. and Dunker, A.K. (2003) Predicting intrinsic disorder from amino acid sequence. Proteins, 53, 566-572.
-
(2003)
Proteins
, vol.53
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
15
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda,Y., Huang, K., Cross, F.R., Cowburn, D. and Chait, B.T. (1999) Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. USA, 96, 6591-6596.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
16
-
-
0036523738
-
Biomarker discovery in urine by proteomics
-
Pang, J.X., Ginanni, N., Dongre, A.R., Hefta, S.A. and Opitek, G.J. (2002) Biomarker discovery in urine by proteomics. J. Proteome Res., 1, 161-169.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 161-169
-
-
Pang, J.X.1
Ginanni, N.2
Dongre, A.R.3
Hefta, S.A.4
Opitek, G.J.5
-
17
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M. and Cottrell, J.S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
18
-
-
1842681979
-
Standard mixtures for proteome studies
-
Purvine, S., Picone, A.F. and Kolker, E. (2004) Standard mixtures for proteome studies. OMICS, 8, 79-92.
-
(2004)
OMICS
, vol.8
, pp. 79-92
-
-
Purvine, S.1
Picone, A.F.2
Kolker, E.3
-
19
-
-
0023803244
-
Predicting the secondary structure of globular proteins using neural network models
-
Qian, N. and Sejnowski, T.J. (1988) Predicting the secondary structure of globular proteins using neural network models. J. Mol. Biol., 202, 865-884.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 865-884
-
-
Qian, N.1
Sejnowski, T.J.2
-
20
-
-
0347364621
-
Protein flexibility and intrinsic disorder
-
Radivojac, P., Obradovic, Z., Smith, D.K., Zhu, G., Vucetic, S., Brown, C.J., Lawson, J.D. and Dunker, A.K. (2004) Protein flexibility and intrinsic disorder. Protein Sci., 13, 71-80.
-
(2004)
Protein Sci.
, vol.13
, pp. 71-80
-
-
Radivojac, P.1
Obradovic, Z.2
Smith, D.K.3
Zhu, G.4
Vucetic, S.5
Brown, C.J.6
Lawson, J.D.7
Dunker, A.K.8
-
22
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero, P., Obradovic, Z., Li, X., Garner, E.C., Brown, C.J. and Dunker, A.K. (2001) Sequence complexity of disordered protein. Proteins, 42, 38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
23
-
-
0028361031
-
Accuracy of protein flexibility predictions
-
Vihinen, M., Torkkila, E. and Riikonen, P. (1994) Accuracy of protein flexibility predictions. Proteins, 19, 141-149.
-
(1994)
Proteins
, vol.19
, pp. 141-149
-
-
Vihinen, M.1
Torkkila, E.2
Riikonen, P.3
-
24
-
-
0041418213
-
Flavors of protein disorder
-
Vucetic, S., Brown, C.J., Dunker, A.K. and Obradovic, Z. (2003) Flavors of protein disorder. Proteins, 52, 573-584.
-
(2003)
Proteins
, vol.52
, pp. 573-584
-
-
Vucetic, S.1
Brown, C.J.2
Dunker, A.K.3
Obradovic, Z.4
-
25
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification strategy
-
Washburn, M.P., Wolters, D. and Yates, J.R.,3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification strategy. Nat. Biotechnol., 19, 242-247.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
26
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J.C. and Federhen, S. (1996) Analysis of compositionally biased regions in sequence databases. Methods Enzymol., 266, 554-571.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
27
-
-
0036523809
-
Minimizing resolution of isotopically coded peptides in comparative proteomics
-
Zhang, R. and Regnier, F.J. (2002) Minimizing resolution of isotopically coded peptides in comparative proteomics. J. Proteome Res., 1, 139-147.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 139-147
-
-
Zhang, R.1
Regnier, F.J.2
|