메뉴 건너뛰기




Volumn 61, Issue 3, 2013, Pages 287-298

Review of software tools for design and analysis of large scale MRM proteomic datasets

Author keywords

Bioinformatics; Database; Mass spectrometry; Multiple reaction monitoring; Targeted proteomics

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BODY FLUID; COMPUTER PROGRAM; DATA ANALYSIS; EXPERIMENTAL DESIGN; INFORMATION PROCESSING; LIQUID CHROMATOGRAPHY; MARKUP LANGUAGE; MULTIPLE REACTION MONITORING; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; QUALITY CONTROL; SIGNAL NOISE RATIO; STANDARD; STANDARDIZATION; TANDEM MASS SPECTROMETRY; WORKFLOW;

EID: 84879593559     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.05.004     Document Type: Article
Times cited : (80)

References (105)
  • 4
    • 0032875697 scopus 로고    scopus 로고
    • Gygi S., et al. Nat. Biotechnol. 1999, 17(10):994-999.
    • (1999) Nat. Biotechnol. , vol.17 , Issue.10 , pp. 994-999
    • Gygi, S.1
  • 7
    • 41149127192 scopus 로고    scopus 로고
    • Asara J., et al. Proteomics 2008, 8(5):994-999.
    • (2008) Proteomics , vol.8 , Issue.5 , pp. 994-999
    • Asara, J.1
  • 9
    • 35649019880 scopus 로고    scopus 로고
    • Shifman M., et al. J. Proteome Res. 2007, 6(10):4019-4024.
    • (2007) J. Proteome Res. , vol.6 , Issue.10 , pp. 4019-4024
    • Shifman, M.1
  • 10
    • 61849105469 scopus 로고    scopus 로고
    • Pan S., et al. J Proteome Res. 2009, 8(2):787-797.
    • (2009) J Proteome Res. , vol.8 , Issue.2 , pp. 787-797
    • Pan, S.1
  • 13
    • 0001331640 scopus 로고
    • Cooks R. Anal. Chem. 1978, 50(14):2017-2021.
    • (1978) Anal. Chem. , vol.50 , Issue.14 , pp. 2017-2021
    • Cooks, R.1
  • 23
    • 68749094119 scopus 로고    scopus 로고
    • Picotti P., et al. Cell 2009, 138(4):795-806.
    • (2009) Cell , vol.138 , Issue.4 , pp. 795-806
    • Picotti, P.1
  • 24
    • 77955456065 scopus 로고    scopus 로고
    • Chen Y., et al. J. Proteome Res. 2010, 9(8):4215-4227.
    • (2010) J. Proteome Res. , vol.9 , Issue.8 , pp. 4215-4227
    • Chen, Y.1
  • 27
    • 71649085644 scopus 로고    scopus 로고
    • Zulak K.G., et al. Plant J. 2009, 60(6):1015-1030.
    • (2009) Plant J. , vol.60 , Issue.6 , pp. 1015-1030
    • Zulak, K.G.1
  • 30
    • 23144442824 scopus 로고    scopus 로고
    • Beynon R.J., et al. Nat. Methods 2005, 2(8):587-589.
    • (2005) Nat. Methods , vol.2 , Issue.8 , pp. 587-589
    • Beynon, R.J.1
  • 31
    • 55849104840 scopus 로고    scopus 로고
    • Dupuis A., et al. Proteomics 2008, 8(22):4633-4636.
    • (2008) Proteomics , vol.8 , Issue.22 , pp. 4633-4636
    • Dupuis, A.1
  • 34
    • 84860862170 scopus 로고    scopus 로고
    • Brusniak M.Y., et al. Proteomics 2012, 12(8):1176-1184.
    • (2012) Proteomics , vol.12 , Issue.8 , pp. 1176-1184
    • Brusniak, M.Y.1
  • 35
  • 41
    • 84860869167 scopus 로고    scopus 로고
    • Escher C., et al. Proteomics 2012, 12(8):1111-1121.
    • (2012) Proteomics , vol.12 , Issue.8 , pp. 1111-1121
    • Escher, C.1
  • 42
    • 84879606012 scopus 로고    scopus 로고
    • Automated Ion Selection and Method Building for MRM Based Protein Validation and Quantification in ASMS
    • D.M. Cox, S. Tate, E. Duchoslav, Automated Ion Selection and Method Building for MRM Based Protein Validation and Quantification in ASMS, 2007.
    • (2007)
    • Cox, D.M.1    Tate, S.2    Duchoslav, E.3
  • 44
    • 84866303718 scopus 로고    scopus 로고
    • Fan J., et al. OMICS 2012, 16(9):483-488.
    • (2012) OMICS , vol.16 , Issue.9 , pp. 483-488
    • Fan, J.1
  • 46
    • 77951965920 scopus 로고    scopus 로고
    • MacLean B., et al. Bioinformatics 2010, 26(7):966-968.
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 966-968
    • MacLean, B.1
  • 51
    • 79955595074 scopus 로고    scopus 로고
    • Reiter L., et al. Nat. Methods 2011, 8(5):430-435.
    • (2011) Nat. Methods , vol.8 , Issue.5 , pp. 430-435
    • Reiter, L.1
  • 58
    • 23944526367 scopus 로고    scopus 로고
    • Martens L., et al. Proteomics 2005, 5(13):3537-3545.
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3537-3545
    • Martens, L.1
  • 61
    • 23944504308 scopus 로고    scopus 로고
    • Deutsch E.W., et al. Proteomics 2005, 5(13):3497-3500.
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3497-3500
    • Deutsch, E.W.1
  • 62
  • 64
    • 67649562538 scopus 로고    scopus 로고
    • Walsh G.M., et al. J. Proteomics 2009, 72(5):838-852.
    • (2009) J. Proteomics , vol.72 , Issue.5 , pp. 838-852
    • Walsh, G.M.1
  • 65
    • 54049095667 scopus 로고    scopus 로고
    • Picotti P., et al. Nat. Methods 2008, 5(11):913-914.
    • (2008) Nat. Methods , vol.5 , Issue.11 , pp. 913-914
    • Picotti, P.1
  • 68
    • 84879607775 scopus 로고    scopus 로고
    • in: ASMS, Vancouver, BC
    • V. Sharma, in: ASMS2012, Vancouver, BC, p. WP 407.
    • (2012)
    • Sharma, V.1
  • 69
  • 75
    • 84894405812 scopus 로고    scopus 로고
    • T. O'Haver, 2013. http://terpconnect.umd.edu/~toh/spectrum/PeakFindingandMeasurement.htm.
    • (2013)
    • O'Haver, T.1
  • 77
    • 84879602420 scopus 로고    scopus 로고
    • in: ASMS, Vancouver, CA, MP26 Poster.
    • D.M. Cox, in: ASMS2012, Vancouver, CA, p. MP26 Poster 625.
    • (2012) , pp. 625
    • Cox, D.M.1
  • 79
    • 39449131119 scopus 로고    scopus 로고
    • Finney G.L., et al. Anal. Chem. 2008, 80(4):961-971.
    • (2008) Anal. Chem. , vol.80 , Issue.4 , pp. 961-971
    • Finney, G.L.1
  • 81
  • 82
    • 84879605964 scopus 로고    scopus 로고
    • A novel algorithm for quantitative LC peak integration, in ASMS. Poster
    • Burton, L., et al., A novel algorithm for quantitative LC peak integration, in ASMS2009. p. Poster I-224.
    • (2009)
    • Burton, L.1
  • 83
    • 84879601412 scopus 로고    scopus 로고
    • Available from:
    • S. Peterman, et al., Available from: 2009. http://www.thermoscientific.com/ecomm/servlet/techresource?storeId=11152&langId=-1&taxonomy=4&resourceId=89932#.
    • (2009)
    • Peterman, S.1
  • 84
    • 84879602527 scopus 로고    scopus 로고
    • Available from:
    • T. Rezai, et al., Available from: https://static.thermoscientific.com/images/D00335~.pdf.
    • Rezai, T.1
  • 85
    • 84879603357 scopus 로고    scopus 로고
    • Waters, Available from:
    • Waters, Available from: 2006. http://www.waters.com/webassets/cms/library/docs/720001733en.pdf.
    • (2006)
  • 87
    • 84879603089 scopus 로고    scopus 로고
    • in: ASMS, Vancouver, BC,ThP12 Poster.
    • D.R. Mani, et al., in: ASMS2012, Vancouver, BC, p. ThP12 Poster 284.
    • (2012) , pp. 284
    • Mani, D.R.1
  • 88
    • 84879601236 scopus 로고    scopus 로고
    • in: ASMS, Salt Lake City, UT, Poster
    • G. Ivosev, et al., in: ASMS2010, Salt Lake City, UT, p. Poster III - 374.
    • (2010) , pp. 3-374
    • Ivosev, G.1
  • 91
    • 77956873627 scopus 로고    scopus 로고
    • Leek J.T., et al. Nat. Rev. Genet. 2010, 11(10):733-739.
    • (2010) Nat. Rev. Genet. , vol.11 , Issue.10 , pp. 733-739
    • Leek, J.T.1
  • 95
  • 97
  • 104
    • 84879607528 scopus 로고    scopus 로고
    • Available from:
    • J. Albanese, C. Hunter, Available from: 2012. http://www.absciex.com/Documents/Downloads/Literature/Scheduled%20MRMHR%20Workflow%20TripleTOF%206260212-01.pdf.
    • (2012)
    • Albanese, J.1    Hunter, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.