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Volumn 9, Issue 5, 2009, Pages 1120-1123

How specific is my SRM?: The issue of precursor and product ion redundancy

Author keywords

Mass spectrometry; MRM; Peptide identification; Redundancy; SRM

Indexed keywords

AMINO ACID SEQUENCE; MASS SPECTROMETRY; METHODOLOGY; PRECURSOR; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REACTION ANALYSIS; REDUNDANCY ANALYSIS; SEQUENCE HOMOLOGY; SHORT SURVEY;

EID: 63049090914     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800577     Document Type: Short Survey
Times cited : (126)

References (18)
  • 1
    • 0037795741 scopus 로고    scopus 로고
    • Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
    • Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., Gygi, S. P., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6940-6945
    • Gerber, S.A.1    Rush, J.2    Stemman, O.3    Kirschner, M.W.4    Gygi, S.P.5
  • 2
    • 8844233567 scopus 로고    scopus 로고
    • Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA)
    • Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B. et al., Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J. Proteome Res. 2004, 3, 235-244.
    • (2004) J. Proteome Res , vol.3 , pp. 235-244
    • Anderson, N.L.1    Anderson, N.G.2    Haines, L.R.3    Hardie, D.B.4
  • 3
    • 4444301306 scopus 로고    scopus 로고
    • Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry
    • Barnidge, D. R., Goodmanson, M. K., Klee, G. G., Muddiman, D. C., Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry. J. Proteome Res. 2004, 3, 644-652.
    • (2004) J. Proteome Res , vol.3 , pp. 644-652
    • Barnidge, D.R.1    Goodmanson, M.K.2    Klee, G.G.3    Muddiman, D.C.4
  • 4
    • 33645715370 scopus 로고    scopus 로고
    • Multiple reaction monitoring as a method for identifying protein posttranslational modifications
    • Cox, D. M., Zhong, F., Du, M., Duchoslav, E. et al., Multiple reaction monitoring as a method for identifying protein posttranslational modifications. J. Biomol. Tech. 2005, 16, 83-90.
    • (2005) J. Biomol. Tech , vol.16 , pp. 83-90
    • Cox, D.M.1    Zhong, F.2    Du, M.3    Duchoslav, E.4
  • 5
    • 13444260275 scopus 로고    scopus 로고
    • The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
    • Kirkpatrick, D. S., Gerber, S. A., Gygi, S. P., The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications. Methods 2005, 35, 265-273.
    • (2005) Methods , vol.35 , pp. 265-273
    • Kirkpatrick, D.S.1    Gerber, S.A.2    Gygi, S.P.3
  • 6
    • 24044553566 scopus 로고    scopus 로고
    • Multiple reaction monitoring to identify sites of protein phosphorylation with high sensitivity
    • Unwin, R. D., Griffiths, J. R., Leverentz, M. K., Grallert, A. et al., Multiple reaction monitoring to identify sites of protein phosphorylation with high sensitivity. Mol. Cell. Proteomics 2005, 4, 1134-1144.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1134-1144
    • Unwin, R.D.1    Griffiths, J.R.2    Leverentz, M.K.3    Grallert, A.4
  • 7
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 8
    • 33747609137 scopus 로고    scopus 로고
    • Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap
    • Lin, S., Shaler, T. A., Becker, C. H., Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap. Anal. Chem. 2006, 78, 5762-5767.
    • (2006) Anal. Chem , vol.78 , pp. 5762-5767
    • Lin, S.1    Shaler, T.A.2    Becker, C.H.3
  • 9
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • Stahl-Zeng, J., Lange, V., Ossola, R., Eckhardt, K. et al., High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol. Cell. Proteomics 2007, 6, 1809-1817.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardt, K.4
  • 10
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian, H., Addona, T., Burgess, M., Kuhn, E., Carr, S. A., Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2007, 6, 2219-2229.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 2219-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 11
    • 34250722602 scopus 로고    scopus 로고
    • Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
    • Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D. A., White, F. M., Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. USA 2007, 104, 5860-5865.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 5860-5865
    • Wolf-Yadlin, A.1    Hautaniemi, S.2    Lauffenburger, D.A.3    White, F.M.4
  • 12
    • 38349133699 scopus 로고    scopus 로고
    • The development of multiple reaction monitoring assays for liver-derived plasma proteins
    • McKay, M., Sherman, J., Laver, M., Baker, M. et al., The development of multiple reaction monitoring assays for liver-derived plasma proteins. Proteomics Clin. Appl. 2007, 1, 1570-1581.
    • (2007) Proteomics Clin. Appl , vol.1 , pp. 1570-1581
    • McKay, M.1    Sherman, J.2    Laver, M.3    Baker, M.4
  • 13
    • 45549108483 scopus 로고    scopus 로고
    • Evaluation of data-dependent versus targeted shotgun proteomic approaches for monitoring transcription factor expression in breast cancer
    • Sandhu, C., Hewel, J. A., Badis, G., Talukder, S. et al., Evaluation of data-dependent versus targeted shotgun proteomic approaches for monitoring transcription factor expression in breast cancer. J. Proteome Res. 2008, 7, 1529-1541.
    • (2008) J. Proteome Res , vol.7 , pp. 1529-1541
    • Sandhu, C.1    Hewel, J.A.2    Badis, G.3    Talukder, S.4
  • 14
    • 43049090085 scopus 로고    scopus 로고
    • Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
    • Lange, V., Malmstrom, J. A., Didion, J., King, N. L. et al., Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol. Cell. Proteomics 2008, 7, 1489-1500.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1489-1500
    • Lange, V.1    Malmstrom, J.A.2    Didion, J.3    King, N.L.4
  • 16
    • 33846133955 scopus 로고    scopus 로고
    • Computational prediction of proteotypic peptides for quantitative proteomics
    • Mallick, P., Schirle, M., Chen, S. S., Flory, M. R. et al., Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 2007, 25, 125-131.
    • (2007) Nat. Biotechnol , vol.25 , pp. 125-131
    • Mallick, P.1    Schirle, M.2    Chen, S.S.3    Flory, M.R.4
  • 18
    • 0001229909 scopus 로고    scopus 로고
    • A practical guide to analytical method validation
    • Green, J. M., A practical guide to analytical method validation. Anal. Chem. 1996, 68, 305A-309A.
    • (1996) Anal. Chem , vol.68
    • Green, J.M.1


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