-
1
-
-
84888103045
-
Trait stacking via targeted genome editing
-
Ainley, W. M., Sastry-Dent, L., Welter, M. E., Murray, M. G., Zeitler, B., Amora, R., et al. (2013). Trait stacking via targeted genome editing. Plant Biotechnol. J. 11, 1126–1134. doi: 10.1111/pbi.12107
-
(2013)
Plant Biotechnol. J
, vol.11
, pp. 1126-1134
-
-
Ainley, W.M.1
Sastry-Dent, L.2
Welter, M.E.3
Murray, M.G.4
Zeitler, B.5
Amora, R.6
-
2
-
-
84982949939
-
Advancing crop transformation in the era of genome editing
-
Altpeter, F., Springer, N. M., Bartley, L. E., Blechl, A. E., Brutnell, T. P., Citovsky, V., et al. (2016). Advancing crop transformation in the era of genome editing. Plant Cell 28, 1510–1520. doi: 10.1105/tpc.16.00196
-
(2016)
Plant Cell
, vol.28
, pp. 1510-1520
-
-
Altpeter, F.1
Springer, N.M.2
Bartley, L.E.3
Blechl, A.E.4
Brutnell, T.P.5
Citovsky, V.6
-
3
-
-
84896882685
-
DNA replicons for plant genome engineering
-
Baltes, N. J., Gil-Humanes, J., Cermak, T., Atkins, P. A., and Voytas, D. F. (2014). DNA replicons for plant genome engineering. Plant Cell 26, 151–163. doi: 10.1105/tpc.113.119792
-
(2014)
Plant Cell
, vol.26
, pp. 151-163
-
-
Baltes, N.J.1
Gil-Humanes, J.2
Cermak, T.3
Atkins, P.A.4
Voytas, D.F.5
-
4
-
-
84921594086
-
Enabling plant synthetic biology through genome engineering
-
Baltes, N. J., and Voytas, D. F. (2015). Enabling plant synthetic biology through genome engineering. Trends Biotechnol. 33, 120–131. doi: 10.1016/j.tibtech. 2014.11.008
-
(2015)
Trends Biotechnol
, vol.33
, pp. 120-131
-
-
Baltes, N.J.1
Voytas, D.F.2
-
5
-
-
0033587679
-
A tool for functional plant genomics: Chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations
-
Beetham, P. R., Kipp, P. B., Sawycky, X. L., Arntzen, C. J., and May, G. D. (1999). A tool for functional plant genomics: chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations. Proc. Natl. Acad. Sci. U.S.A. 96, 8774–8778. doi: 10.1073/pnas.96.15.8774
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, pp. 8774-8778
-
-
Beetham, P.R.1
Kipp, P.B.2
Sawycky, X.L.3
Arntzen, C.J.4
May, G.D.5
-
6
-
-
84931846154
-
Editing plant genomes with CRISPR/Cas9
-
Belhaj, K., Chaparro-Garcia, A., Kamoun, S., Patron, N. J., and Nekrasov, V. (2015). Editing plant genomes with CRISPR/Cas9. Curr. Opin. Biotechnol. 32, 76–84. doi: 10.1016/j.copbio.2014.11.007
-
(2015)
Curr. Opin. Biotechnol
, vol.32
, pp. 76-84
-
-
Belhaj, K.1
Chaparro-Garcia, A.2
Kamoun, S.3
Patron, N.J.4
Nekrasov, V.5
-
7
-
-
0036021389
-
Targeted chromosomal cleavage and mutagenesis in drosophila using zinc-finger nucleases
-
Bibikova, M., Golic, M., Golic, K. G., and Carroll, D. (2002). Targeted chromosomal cleavage and mutagenesis in drosophila using zinc-finger nucleases. Genetics 161, 1169–1175.
-
(2002)
Genetics
, vol.161
, pp. 1169-1175
-
-
Bibikova, M.1
Golic, M.2
Golic, K.G.3
Carroll, D.4
-
8
-
-
80053343092
-
TAL effectors: Customizable proteins for DNA targeting
-
Bogdanove, A. J., and Voytas, D. F. (2011). TAL effectors: customizable proteins for DNA targeting. Science 333, 1843–1846. doi: 10.1126/science.1204094
-
(2011)
Science
, vol.333
, pp. 1843-1846
-
-
Bogdanove, A.J.1
Voytas, D.F.2
-
9
-
-
84940830909
-
Targeted modification of gene function exploiting homology-directed repair of TALEN-mediated double-strand breaks in barley
-
Budhagatapalli, N., Rutten, T., Gurushidze, M., Kumlehn, J., and Hensel, G. (2015). Targeted modification of gene function exploiting homology-directed repair of TALEN-mediated double-strand breaks in barley. G3 5, 1857–1863. doi: 10.1534/g3.115.018762
-
(2015)
G3
, vol.5
, pp. 1857-1863
-
-
Budhagatapalli, N.1
Rutten, T.2
Gurushidze, M.3
Kumlehn, J.4
Hensel, G.5
-
10
-
-
84979703446
-
Geminivirus-mediated genome editing in potato (Solanum tuberosum L.) using sequence-specific nucleases
-
Butler, N. M., Baltes, N. J., Voytas, D. F., and Douches, D. S. (2016). Geminivirus-mediated genome editing in potato (Solanum tuberosum L.) using sequence-specific nucleases. Front. Plant Sci. 7:1045. doi: 10.3389/fpls.2016.01045
-
(2016)
Front. Plant Sci
, vol.7
, pp. 1045
-
-
Butler, N.M.1
Baltes, N.J.2
Voytas, D.F.3
Douches, D.S.4
-
11
-
-
61649085865
-
Targeted transgene integration in plant cells using designed zinc finger nucleases
-
Cai, C. Q., Doyon, Y., Ainley, W. M., Miller, J. C., Dekelver, R. C., Moehle, E. A., et al. (2009). Targeted transgene integration in plant cells using designed zinc finger nucleases. Plant Mol. Biol. 69, 699–709. doi: 10.1007/s11103-008-9449-7
-
(2009)
Plant Mol. Biol
, vol.69
, pp. 699-709
-
-
Cai, C.Q.1
Doyon, Y.2
Ainley, W.M.3
Miller, J.C.4
Dekelver, R.C.5
Moehle, E.A.6
-
12
-
-
84946416320
-
High-frequency, precise modification of the tomato genome
-
Cermak, T., Baltes, N. J., Cegan, R., Zhang, Y., and Voytas, D. F. (2015). High-frequency, precise modification of the tomato genome. Genome Biol. 16: 232. doi: 10.1186/s13059-015-0796-9
-
(2015)
Genome Biol
, vol.16
, pp. 232
-
-
Cermak, T.1
Baltes, N.J.2
Cegan, R.3
Zhang, Y.4
Voytas, D.F.5
-
13
-
-
80051741721
-
Efficient mutagenesis of the rhodopsin gene in rod photoreceptor neurons in mice
-
Chan, F., Hauswirth, W. W., Wensel, T. G., and Wilson, J. H. (2011). Efficient mutagenesis of the rhodopsin gene in rod photoreceptor neurons in mice. Nucleic Acids Res. 39, 5955–5966. doi: 10.1093/nar/gkr196
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5955-5966
-
-
Chan, F.1
Hauswirth, W.W.2
Wensel, T.G.3
Wilson, J.H.4
-
14
-
-
78951479577
-
Targeting DNA double-strand breaks with TAL effector nucleases
-
Christian, M., Cermak, T., Doyle, E. L., Schmidt, C., Zhang, F., Hummel, A., et al. (2010). Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186, 757–761. doi: 10.1534/genetics.110.120717
-
(2010)
Genetics
, vol.186
, pp. 757-761
-
-
Christian, M.1
Cermak, T.2
Doyle, E.L.3
Schmidt, C.4
Zhang, F.5
Hummel, A.6
-
15
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., et al. (2013). Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819–823. doi: 10.1126/science.1231143
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
-
16
-
-
84890490622
-
Gene editing a constitutively active OsRac1 by homologous recombinationbased gene targeting induces immune responses in rice
-
Dang, T. T., Shimatani, Z., Kawano, Y., Terada, R., and Shimamoto, K. (2013). Gene editing a constitutively active OsRac1 by homologous recombinationbased gene targeting induces immune responses in rice. Plant Cell Physiol. 54, 2058–2070. doi: 10.1093/pcp/pct147
-
(2013)
Plant Cell Physiol
, vol.54
, pp. 2058-2070
-
-
Dang, T.T.1
Shimatani, Z.2
Kawano, Y.3
Terada, R.4
Shimamoto, K.5
-
17
-
-
70349103842
-
ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation
-
de Pater, S., Neuteboom, L. W., Pinas, J. E., Hooykaas, P. J., and Van Der Zaal, B. J. (2009). ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation. Plant Biotechnol. J. 7, 821–835. doi: 10.1111/j.1467-7652.2009.00446.x
-
(2009)
Plant Biotechnol. J
, vol.7
, pp. 821-835
-
-
De Pater, S.1
Neuteboom, L.W.2
Pinas, J.E.3
Hooykaas, P.J.4
Van Der Zaal, B.J.5
-
18
-
-
84876955340
-
ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation
-
de Pater, S., Pinas, J. E., Hooykaas, P. J., and Van Der Zaal, B. J. (2013). ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation. Plant Biotechnol. J. 11, 510–515. doi: 10.1111/pbi.12040
-
(2013)
Plant Biotechnol. J
, vol.11
, pp. 510-515
-
-
De Pater, S.1
Pinas, J.E.2
Hooykaas, P.J.3
Van Der Zaal, B.J.4
-
19
-
-
84913594397
-
The new frontier of genome engineering with CRISPR-Cas9
-
Doudna, J. A., and Charpentier, E. (2014). The new frontier of genome engineering with CRISPR-Cas9. Science 346: 1258096. doi: 10.1126/science.1258096
-
(2014)
Science
, vol.346
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
-
20
-
-
33751581590
-
Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants
-
Endo, M., Ishikawa, Y., Osakabe, K., Nakayama, S., Kaya, H., Araki, T., et al. (2006). Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants. EMBO J. 25, 5579–5590. doi: 10.1038/sj.emboj. 7601434
-
(2006)
EMBO J
, vol.25
, pp. 5579-5590
-
-
Endo, M.1
Ishikawa, Y.2
Osakabe, K.3
Nakayama, S.4
Kaya, H.5
Araki, T.6
-
21
-
-
84956760665
-
Biallelic gene targeting in rice
-
Endo, M., Mikami, M., and Toki, S. (2016). Biallelic gene targeting in rice. Plant Physiol. 170, 667–677. doi: 10.1104/pp.15.01663
-
(2016)
Plant Physiol
, vol.170
, pp. 667-677
-
-
Endo, M.1
Mikami, M.2
Toki, S.3
-
22
-
-
82355181082
-
Localized egg-cell expression of effector proteins for targeted modification of the Arabidopsis genome
-
Even-Faitelson, L., Samach, A., Melamed-Bessudo, C., Avivi-Ragolsky, N., and Levy, A. A. (2011). Localized egg-cell expression of effector proteins for targeted modification of the Arabidopsis genome. Plant J. 68, 929–937. doi: 10.1111/j. 1365-313X.2011.04741.x
-
(2011)
Plant J
, vol.68
, pp. 929-937
-
-
Even-Faitelson, L.1
Samach, A.2
Melamed-Bessudo, C.3
Avivi-Ragolsky, N.4
Levy, A.A.5
-
23
-
-
84860788027
-
In planta gene targeting
-
Fauser, F., Roth, N., Pacher, M., Ilg, G., Sanchez-Fernandez, R., and Biesgen, C. (2012). In planta gene targeting. Proc. Natl. Acad. Sci. U.S.A. 109, 7535–7540. doi: 10.1073/pnas.1202191109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 7535-7540
-
-
Fauser, F.1
Roth, N.2
Pacher, M.3
Ilg, G.4
Sanchez-Fernandez, R.5
Biesgen, C.6
-
24
-
-
84904068340
-
Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
-
Fauser, F., Schiml, S., and Puchta, H. (2014). Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J. 79, 348–359. doi: 10.1111/tpj.12554
-
(2014)
Plant J
, vol.79
, pp. 348-359
-
-
Fauser, F.1
Schiml, S.2
Puchta, H.3
-
25
-
-
84896924524
-
Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis
-
Feng, Z., Mao, Y., Xu, N., Zhang, B., Wei, P., Yang, D. L., et al. (2014). Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 111, 4632–4637. doi: 10.1073/pnas.1400822111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 4632-4637
-
-
Feng, Z.1
Mao, Y.2
Xu, N.3
Zhang, B.4
Wei, P.5
Yang, D.L.6
-
26
-
-
84879264708
-
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
-
Gaj, T., Gersbach, C. A., and Barbas, C. F. III (2013). ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol. 31, 397–405. doi: 10.1016/j.tibtech.2013.04.004
-
(2013)
Trends Biotechnol
, vol.31
, pp. 397-405
-
-
Gaj, T.1
Gersbach, C.A.2
Barbas, C.F.I.3
-
27
-
-
84977578000
-
An effective strategy for reliably isolating heritable and Cas9-free Arabidopsis mutants generated by CRISPR/Cas9-mediated genome editing
-
Gao, X., Chen, J., Dai, X., Zhang, D., and Zhao, Y. (2016). An effective strategy for reliably isolating heritable and Cas9-free Arabidopsis mutants generated by CRISPR/Cas9-mediated genome editing. Plant Physiol. 171, 1794–1800. doi: 10.1104/pp.16.00663
-
(2016)
Plant Physiol
, vol.171
, pp. 1794-1800
-
-
Gao, X.1
Chen, J.2
Dai, X.3
Zhang, D.4
Zhao, Y.5
-
28
-
-
84897546295
-
Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing
-
Gao, Y., and Zhao, Y. (2014). Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. J. Integr. Plant Biol. 56, 343–349. doi: 10.1111/jipb.12152
-
(2014)
J. Integr. Plant Biol
, vol.56
, pp. 343-349
-
-
Gao, Y.1
Zhao, Y.2
-
29
-
-
0026566017
-
Gene targeting in Arabidopsis thaliana
-
Halfter, U., Morris, P.-C., and Willmitzer, L. (1992). Gene targeting in Arabidopsis thaliana. Mol. Gen. Genet. 231, 186–193.
-
(1992)
Mol. Gen. Genet
, vol.231
, pp. 186-193
-
-
Halfter, U.1
Morris, P.-C.2
Willmitzer, L.3
-
30
-
-
36749085205
-
Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana
-
Hartung, F., Suer, S., and Puchta, H. (2007). Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 104, 18836–18841. doi: 10. 1073/pnas.0705998104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 18836-18841
-
-
Hartung, F.1
Suer, S.2
Puchta, H.3
-
31
-
-
84910126816
-
Progress of cereal transformation technology mediated by Agrobacterium tumefaciens
-
Hiei, Y., Ishida, Y., and Komari, T. (2014). Progress of cereal transformation technology mediated by Agrobacterium tumefaciens. Front. Plant Sci. 5:628. doi: 10.3389/fpls.2014.00628
-
(2014)
Front. Plant Sci
, vol.5
, pp. 628
-
-
Hiei, Y.1
Ishida, Y.2
Komari, T.3
-
32
-
-
0028226641
-
High fidelity extrachromosomal recombination and gene targeting in plants
-
Hrouda, M., and Paszkowski, J. (1994). High fidelity extrachromosomal recombination and gene targeting in plants. Mol. Gen. Genet. 243, 106–111. doi: 10.1007/BF00283882
-
(1994)
Mol. Gen. Genet
, vol.243
, pp. 106-111
-
-
Hrouda, M.1
Paszkowski, J.2
-
33
-
-
84865070369
-
A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., and Charpentier, E. (2012). A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816–821. doi: 10.1126/science. 1225829
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
34
-
-
0030032063
-
Hybrid restriction enzymes: Zinc finger fusions to Fok I cleavage domain
-
Kim, Y. G., Cha, J., and Chandrasegaran, S. (1996). Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain. Proc. Natl. Acad. Sci. U.S.A. 93, 1156–1160. doi: 10.1073/pnas.93.3.1156
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 1156-1160
-
-
Kim, Y.G.1
Cha, J.2
Chandrasegaran, S.3
-
35
-
-
84861675090
-
The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis
-
Knoll, A., Higgins, J. D., Seeliger, K., Reha, S. J., Dangel, N. J., Bauknecht, M., et al. (2012). The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis. Plant Cell 24, 1448–1464. doi: 10.1105/tpc.112.096644
-
(2012)
Plant Cell
, vol.24
, pp. 1448-1464
-
-
Knoll, A.1
Higgins, J.D.2
Seeliger, K.3
Reha, S.J.4
Dangel, N.J.5
Bauknecht, M.6
-
36
-
-
79952339847
-
The role of DNA helicases and their interaction partners in genome stability and meiotic recombination in plants
-
Knoll, A., and Puchta, H. (2011). The role of DNA helicases and their interaction partners in genome stability and meiotic recombination in plants. J. Exp. Bot. 62, 1565–1579. doi: 10.1093/jxb/erq357
-
(2011)
J. Exp. Bot
, vol.62
, pp. 1565-1579
-
-
Knoll, A.1
Puchta, H.2
-
37
-
-
84929305646
-
A modular gene targeting system for sequential transgene stacking in plants
-
Kumar, S., Alabed, D., Worden, A., Novak, S., Wu, H., Ausmus, C., et al. (2015). A modular gene targeting system for sequential transgene stacking in plants. J. Biotechnol. 207, 12–20. doi: 10.1016/j.jbiotec.2015.04.006
-
(2015)
J. Biotechnol
, vol.207
, pp. 12-20
-
-
Kumar, S.1
Alabed, D.2
Worden, A.3
Novak, S.4
Wu, H.5
Ausmus, C.6
-
38
-
-
84957943049
-
Gene targeting and transgene stacking using intra genomic homologous recombination in plants
-
Kumar, S., Barone, P., and Smith, M. (2016). Gene targeting and transgene stacking using intra genomic homologous recombination in plants. Plant Methods 12:11. doi: 10.1186/s13007-016-0111-0
-
(2016)
Plant Methods
, vol.12
, pp. 11
-
-
Kumar, S.1
Barone, P.2
Smith, M.3
-
39
-
-
84870797884
-
Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice
-
Kwon, Y. I., Abe, K., Osakabe, K., Endo, M., Nishizawa-Yokoi, A., Saika, H., et al. (2012). Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice. Plant Cell Physiol. 53, 2142–2152. doi: 10.1093/pcp/pcs155
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 2142-2152
-
-
Kwon, Y.I.1
Abe, K.2
Osakabe, K.3
Endo, M.4
Nishizawa-Yokoi, A.5
Saika, H.6
-
40
-
-
84948761978
-
Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease
-
Lawrenson, T., Shorinola, O., Stacey, N., Li, C., Østergaard, L., Patron, N., et al. (2015). Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease. Genome Biol. 16: 258. doi: 10.1186/ s13059-015-0826-7
-
(2015)
Genome Biol
, vol.16
, pp. 258
-
-
Lawrenson, T.1
Shorinola, O.2
Stacey, N.3
Li, C.4
Østergaard, L.5
Patron, N.6
-
41
-
-
0025429006
-
Homologous recombination in plant cells after Agrobacterium-mediated transformation
-
Lee, K. Y., Lund, P., Lowe, K., and Dunsmuir, P. (1990). Homologous recombination in plant cells after Agrobacterium-mediated transformation. Plant Cell 2, 415–425. doi: 10.1105/tpc.2.5.415
-
(1990)
Plant Cell
, vol.2
, pp. 415-425
-
-
Lee, K.Y.1
Lund, P.2
Lowe, K.3
Dunsmuir, P.4
-
42
-
-
78651270582
-
TAL nucleases (TALNs): Hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain
-
Li, T., Huang, S., Jiang, W. Z., Wright, D., Spalding, M. H., Weeks, D. P., et al. (2011). TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain. Nucleic Acids Res. 39, 359–372. doi: 10.1093/nar/ gkq704
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 359-372
-
-
Li, T.1
Huang, S.2
Jiang, W.Z.3
Wright, D.4
Spalding, M.H.5
Weeks, D.P.6
-
43
-
-
84966472200
-
TALEN-mediated homologous recombination produces site-directed DNA base change and herbicide-resistant rice
-
Li, T., Liu, B., Chen, C. Y., and Yang, B. (2016). TALEN-mediated homologous recombination produces site-directed DNA base change and herbicide-resistant rice. J. Genet. Genomics 43, 297–305. doi: 10.1016/j.jgg.2016.03.005
-
(2016)
J. Genet. Genomics
, vol.43
, pp. 297-305
-
-
Li, T.1
Liu, B.2
Chen, C.Y.3
Yang, B.4
-
44
-
-
84942908491
-
Cas9-guide RNA directed genome editing in soybean
-
Li, Z., Liu, Z. B., Xing, A., Moon, B. P., Koellhoffer, J. P., Huang, L., et al. (2015). Cas9-guide RNA directed genome editing in soybean. Plant Physiol. 169, 960–970. doi: 10.1104/pp.15.00783
-
(2015)
Plant Physiol
, vol.169
, pp. 960-970
-
-
Li, Z.1
Liu, Z.B.2
Xing, A.3
Moon, B.P.4
Koellhoffer, J.P.5
Huang, L.6
-
45
-
-
13844319542
-
Targeted mutagenesis using zinc-finger nucleases in Arabidopsis
-
Lloyd, A., Plaisier, C. L., Carroll, D., and Drews, G. N. (2005). Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proc. Natl.Acad. Sci. U.S.A. 102, 2232–2237. doi: 10.1073/pnas.0409339102
-
(2005)
Proc. Natl.Acad. Sci. U.S.A
, vol.102
, pp. 2232-2237
-
-
Lloyd, A.1
Plaisier, C.L.2
Carroll, D.3
Drews, G.N.4
-
46
-
-
84938748218
-
A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot Plants
-
Ma, X., Zhang, Q., Zhu, Q., Liu, W., Chen, Y., Qiu, R., et al. (2015). A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot Plants. Mol. Plant 8, 1274–1284. doi: 10.1016/j.molp. 2015.04.007
-
(2015)
Mol. Plant
, vol.8
, pp. 1274-1284
-
-
Ma, X.1
Zhang, Q.2
Zhu, Q.3
Liu, W.4
Chen, Y.5
Qiu, R.6
-
47
-
-
85009143841
-
CRISPR/Cas9 platforms for genome editing in plants: Developments and applications
-
Ma, X., Zhu, Q., Chen, Y., and Liu, Y. G. (2016). CRISPR/Cas9 platforms for genome editing in plants: developments and applications. Mol. Plant 9, 961–974. doi: 10.1016/j.molp.2016.04.009
-
(2016)
Mol. Plant
, vol.9
, pp. 961-974
-
-
Ma, X.1
Zhu, Q.2
Chen, Y.3
Liu, Y.G.4
-
48
-
-
79952302385
-
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks
-
Mahfouz, M. M., Li, L., Shamimuzzaman, M., Wibowo, A., Fang, X., and Zhu, J. K. (2011). De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proc. Natl. Acad. Sci. U.S.A. 108, 2623–2628. doi: 10.1073/pnas.1019533108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A
, vol.108
, pp. 2623-2628
-
-
Mahfouz, M.M.1
Li, L.2
Shamimuzzaman, M.3
Wibowo, A.4
Fang, X.5
Zhu, J.K.6
-
49
-
-
0029240445
-
Targeted disruption of the TGA3 locus in Arabidopsis thaliana
-
Miao, Z. H., and Lam, E. (1995). Targeted disruption of the TGA3 locus in Arabidopsis thaliana. Plant J. 7, 359–365. doi: 10.1046/j.1365-313X.1995. 7020359.x
-
(1995)
Plant J
, vol.7
, pp. 359-365
-
-
Miao, Z.H.1
Lam, E.2
-
50
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller, J. C., Tan, S., Qiao, G., Barlow, K. A., Wang, J., Xia, D. F., et al. (2011). A TALE nuclease architecture for efficient genome editing. Nat. Biotechnol. 29, 143–148. doi: 10.1038/nbt.1755
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 143-148
-
-
Miller, J.C.1
Tan, S.2
Qiao, G.3
Barlow, K.A.4
Wang, J.5
Xia, D.F.6
-
51
-
-
84862580050
-
Targeted disruption of an orthologue of domains rearranged methylase 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
-
Moritoh, S., Eun, C. H., Ono, A., Asao, H., Okano, Y., Yamaguchi, K., et al. (2012). Targeted disruption of an orthologue of domains rearranged methylase 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation. Plant J. 71, 85–98. doi: 10.1111/j.1365-313X.2012.04974.x
-
(2012)
Plant J
, vol.71
, pp. 85-98
-
-
Moritoh, S.1
Eun, C.H.2
Ono, A.3
Asao, H.4
Okano, Y.5
Yamaguchi, K.6
-
52
-
-
84940932488
-
A universal positive-negative selection system for gene targeting in plants combining an antibiotic resistance gene and its antisense RNA
-
Nishizawa-Yokoi, A., Nonaka, S., Osakabe, K., Saika, H., and Toki, S. (2015). A universal positive-negative selection system for gene targeting in plants combining an antibiotic resistance gene and its antisense RNA. Plant Physiol. 169, 362–370. doi: 10.1104/pp.15.00638
-
(2015)
Plant Physiol
, vol.169
, pp. 362-370
-
-
Nishizawa-Yokoi, A.1
Nonaka, S.2
Osakabe, K.3
Saika, H.4
Toki, S.5
-
53
-
-
0025183234
-
Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation
-
Offringa, R., De Groot, M. J., Haagsman, H. J., Does, M. P., Van Den Elzen, P. J., and Hooykaas, P. J. (1990). Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation. EMBO J. 9, 3077–3084.
-
(1990)
EMBO J
, vol.9
, pp. 3077-3084
-
-
Offringa, R.1
De Groot, M.J.2
Haagsman, H.J.3
Does, M.P.4
Van Den Elzen, P.J.5
Hooykaas, P.J.6
-
54
-
-
1242298958
-
Chimeric RNA/DNA oligonucleotide-directed gene targeting in rice
-
Okuzaki, A., and Toriyama, K. (2004). Chimeric RNA/DNA oligonucleotide-directed gene targeting in rice. Plant Cell Rep. 22, 509–512. doi: 10.1007/s00299-003-0698-2
-
(2004)
Plant Cell Rep
, vol.22
, pp. 509-512
-
-
Okuzaki, A.1
Toriyama, K.2
-
55
-
-
84864617168
-
A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny
-
Ono, A., Yamaguchi, K., Fukada-Tanaka, S., Terada, R., Mitsui, T., and Iida, S. (2012). A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny. Plant J. 71, 564–574. doi: 10.1111/j.1365-313X.2012. 05009.x
-
(2012)
Plant J
, vol.71
, pp. 564-574
-
-
Ono, A.1
Yamaguchi, K.2
Fukada-Tanaka, S.3
Terada, R.4
Mitsui, T.5
Iida, S.6
-
56
-
-
84899064952
-
A mutated cytosine deaminase gene, codA (D314A), as an efficient negative selection marker for gene targeting in rice
-
Osakabe, K., Nishizawa-Yokoi, A., Ohtsuki, N., Osakabe, Y., and Toki, S. (2014). A mutated cytosine deaminase gene, codA (D314A), as an efficient negative selection marker for gene targeting in rice. Plant Cell Physiol. 55, 658–665. doi: 10.1093/pcp/pct183
-
(2014)
Plant Cell Physiol
, vol.55
, pp. 658-665
-
-
Osakabe, K.1
Nishizawa-Yokoi, A.2
Ohtsuki, N.3
Osakabe, Y.4
Toki, S.5
-
57
-
-
84938521400
-
Genome editing with engineered nucleases in plants
-
Osakabe, Y., and Osakabe, K. (2015). Genome editing with engineered nucleases in plants. Plant Cell Physiol. 56, 389–400. doi: 10.1093/pcp/pcu170
-
(2015)
Plant Cell Physiol
, vol.56
, pp. 389-400
-
-
Osakabe, Y.1
Osakabe, K.2
-
58
-
-
79954622489
-
Pathways to meiotic recombination in Arabidopsis thaliana
-
Osman, K., Higgins, J. D., Sanchez-Moran, E., Armstrong, S. J., and Franklin, F. C. (2011). Pathways to meiotic recombination in Arabidopsis thaliana. New Phytol. 190, 523–544. doi: 10.1111/j.1469-8137.2011.03665.x
-
(2011)
New Phytol
, vol.190
, pp. 523-544
-
-
Osman, K.1
Higgins, J.D.2
Sanchez-Moran, E.3
Armstrong, S.J.4
Franklin, F.C.5
-
59
-
-
84859781058
-
Development of an efficient agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and b1,2-xylosyltransferase
-
Ozawa, K., Wakasa, Y., Ogo, Y., Matsuo, K., Kawahigashi, H., and Takaiwa, F. (2012). Development of an efficient agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and b1,2-xylosyltransferase. Plant Cell Physiol. 53, 755–761. doi: 10.1093/pcp/pcs016
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 755-761
-
-
Ozawa, K.1
Wakasa, Y.2
Ogo, Y.3
Matsuo, K.4
Kawahigashi, H.5
Takaiwa, F.6
-
60
-
-
34047128282
-
Two unlinked double-strand breaks can induce reciprocal exchanges in plant genomes via homologous recombination and nonhomologous end joining
-
Pacher, M., Schmidt-Puchta, W., and Puchta, H. (2007). Two unlinked double-strand breaks can induce reciprocal exchanges in plant genomes via homologous recombination and nonhomologous end joining. Genetics 175, 21–29. doi: 10.1534/genetics.106.065185
-
(2007)
Genetics
, vol.175
, pp. 21-29
-
-
Pacher, M.1
Schmidt-Puchta, W.2
Puchta, H.3
-
61
-
-
0000976249
-
Gene targeting in plants
-
Paszkowski, J., Baur, M., Bogucki, A., and Potrykus, I. (1988). Gene targeting in plants. EMBO J. 7, 4021–4026.
-
(1988)
EMBO J
, vol.7
, pp. 4021-4026
-
-
Paszkowski, J.1
Baur, M.2
Bogucki, A.3
Potrykus, I.4
-
62
-
-
84921863093
-
Genome editing in plants via designed zinc finger nucleases
-
Petolino, J. F. (2015). Genome editing in plants via designed zinc finger nucleases. In Vitro Cell. Dev. Biol. Plant 51, 1–8. doi: 10.1007/s11627-015-9663-3
-
(2015)
Vitro Cell. Dev. Biol. Plant
, vol.51
, pp. 1-8
-
-
Petolino, J.F.1
-
63
-
-
0031931359
-
Repair of genomic double-strand breaks in somatic plant cells by one-sided invasion of homologous sequences
-
Puchta, H. (1998). Repair of genomic double-strand breaks in somatic plant cells by one-sided invasion of homologous sequences. Plant J. 13, 331–339. doi: 10.1046/j.1365-313X.1998.00035.x
-
(1998)
Plant J
, vol.13
, pp. 331-339
-
-
Puchta, H.1
-
64
-
-
11444267813
-
The repair of double-strand breaks in plants: Mechanisms and consequences for genome evolution
-
Puchta, H. (2005). The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. J. Exp. Bot. 56, 1–14.
-
(2005)
J. Exp. Bot
, vol.56
, pp. 1-14
-
-
Puchta, H.1
-
65
-
-
0027384567
-
Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease
-
Puchta, H., Dujon, B., and Hohn, B. (1993). Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease. Nucleic Acids Res. 21, 5034–5040. doi: 10.1093/nar/ 21.22.5034
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5034-5040
-
-
Puchta, H.1
Dujon, B.2
Hohn, B.3
-
66
-
-
0029946668
-
Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination
-
Puchta, H., Dujon, B., and Hohn, B. (1996). Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl. Acad. Sci. U.S.A. 93, 5055–5060. doi: 10.1073/pnas.93.10.5055
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 5055-5060
-
-
Puchta, H.1
Dujon, B.2
Hohn, B.3
-
67
-
-
84886881619
-
Gene targeting in plants: 25 years later
-
Puchta, H., and Fauser, F. (2013). Gene targeting in plants: 25 years later. Int. J. Dev. Biol. 57, 629–637. doi: 10.1387/ijdb.130194hp
-
(2013)
Int. J. Dev. Biol
, vol.57
, pp. 629-637
-
-
Puchta, H.1
Fauser, F.2
-
68
-
-
84901386271
-
Synthetic nucleases for genome engineering in plants: Prospects for a bright future
-
Puchta, H., and Fauser, F. (2014). Synthetic nucleases for genome engineering in plants: prospects for a bright future. Plant J. 78, 727–741. doi: 10.1111/tpj.12338
-
(2014)
Plant J
, vol.78
, pp. 727-741
-
-
Puchta, H.1
Fauser, F.2
-
69
-
-
84944627294
-
Double-strand break repair and its application to genome engineering in plants
-
Puchta, H., and Fauser, F. (2015). “Double-strand break repair and its application to genome engineering in plants,” in Advances in New Technology for Targeted Modification of Plant Genomes, eds F. Zhang, H. Puchta, and J. G. Thomson (New York, NY: Springer), 1–20.
-
(2015)
Advances in New Technology for Targeted Modification of Plant Genomes, Eds F. Zhang, H. Puchta, and J. G. Thomson (New York, NY: Springer
, pp. 1-20
-
-
Puchta, H.1
Fauser, F.2
-
70
-
-
0026002496
-
The mechanism of extrachromosomal homologous DNA recombination in plant cells
-
Puchta, H., and Hohn, B. (1991a). The mechanism of extrachromosomal homologous DNA recombination in plant cells. Mol. Gen. Genet. 230, 1–7. doi: 10.1007/BF00290641
-
(1991)
Mol. Gen. Genet
, vol.230
, pp. 1-7
-
-
Puchta, H.1
Hohn, B.2
-
71
-
-
0025893887
-
A transient assay in plant cells reveals a positive correlation between extrachromosomal recombination rates and length of homologous overlap
-
Puchta, H., and Hohn, B. (1991b). A transient assay in plant cells reveals a positive correlation between extrachromosomal recombination rates and length of homologous overlap. Nucleic Acids Res. 19, 2693–2700. doi: 10.1093/nar/19. 10.2693
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2693-2700
-
-
Puchta, H.1
Hohn, B.2
-
72
-
-
84874643080
-
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
-
Qi, Y., Zhang, Y., Zhang, F., Baller, J. A., Cleland, S. C., Ryu, Y., et al. (2013). Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways. Genome Res. 23, 547–554. doi: 10.1101/gr.145557.112
-
(2013)
Genome Res
, vol.23
, pp. 547-554
-
-
Qi, Y.1
Zhang, Y.2
Zhang, F.3
Baller, J.A.4
Cleland, S.C.5
Ryu, Y.6
-
73
-
-
84922185634
-
The Arabidopsis thaliana homolog of the helicase RTEL1 plays multiple roles in preserving genome stability
-
Recker, J., Knoll, A., and Puchta, H. (2014). The Arabidopsis thaliana homolog of the helicase RTEL1 plays multiple roles in preserving genome stability. Plant Cell 26, 4889–4902. doi: 10.1105/tpc.114.132472
-
(2014)
Plant Cell
, vol.26
, pp. 4889-4902
-
-
Recker, J.1
Knoll, A.2
Puchta, H.3
-
74
-
-
0034724291
-
RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium
-
Reiss, B., Schubert, I., Köpchen, K., Wendeler, E., Schell, J., and Puchta, H. (2000). RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium. Proc. Natl. Acad. Sci. U.S.A. 97, 3358–3363. doi: 10.1073/pnas.97. 7.3358
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 3358-3363
-
-
Reiss, B.1
Schubert, I.2
Köpchen, K.3
Wendeler, E.4
Schell, J.5
Puchta, H.6
-
75
-
-
0029107293
-
Targeted recombination in plants using Agrobacterium coincides with additional rearrangements at the target locus
-
Risseeuw, E., Offringa, R., Franke-Van Dijk, M. E., and Hooykaas, P. J. (1995). Targeted recombination in plants using Agrobacterium coincides with additional rearrangements at the target locus. Plant J. 7, 109–119. doi: 10.1046/ j.1365-313X.1995.07010109.x
-
(1995)
Plant J
, vol.7
, pp. 109-119
-
-
Risseeuw, E.1
Offringa, R.2
Franke-Van Dijk, M.E.3
Hooykaas, P.J.4
-
76
-
-
84870062960
-
The requirement for recombination factors differs considerably between different pathways of homologous double-strand break repair in somatic plant cells
-
Roth, N., Klimesch, J., Dukowic-Schulze, S., Pacher, M., Mannuss, A., and Puchta, H. (2012). The requirement for recombination factors differs considerably between different pathways of homologous double-strand break repair in somatic plant cells. Plant J. 72, 781–790. doi: 10.1111/j.1365-313X. 2012.05119.x
-
(2012)
Plant J
, vol.72
, pp. 781-790
-
-
Roth, N.1
Klimesch, J.2
Dukowic-Schulze, S.3
Pacher, M.4
Mannuss, A.5
Puchta, H.6
-
77
-
-
84962091068
-
Oligonucleotide-mediated genome editing provides precision and function to engineered nucleases and antibiotics in plants
-
Sauer, N. J., Narvaez-Vasquez, J., Mozoruk, J., Miller, R. B., Warburg, Z. J., Woodward, M. J., et al. (2016). Oligonucleotide-mediated genome editing provides precision and function to engineered nucleases and antibiotics in plants. Plant Physiol. 170, 1917–1928. doi: 10.1104/pp.15.01696
-
(2016)
Plant Physiol
, vol.170
, pp. 1917-1928
-
-
Sauer, N.J.1
Narvaez-Vasquez, J.2
Mozoruk, J.3
Miller, R.B.4
Warburg, Z.J.5
Woodward, M.J.6
-
78
-
-
84916624400
-
The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny
-
Schiml, S., Fauser, F., and Puchta, H. (2014). The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. Plant J. 80, 1139–1150. doi: 10.1111/tpj.12704
-
(2014)
Plant J
, vol.80
, pp. 1139-1150
-
-
Schiml, S.1
Fauser, F.2
Puchta, H.3
-
79
-
-
84957837698
-
Revolutionizing plant biology: Multiple ways of genome engineering by CRISPR/Cas
-
Schiml, S., and Puchta, H. (2016). Revolutionizing plant biology: multiple ways of genome engineering by CRISPR/Cas. Plant methods 12:8. doi: 10.1186/s13007-016-0103-0
-
(2016)
Plant Methods
, vol.12
, pp. 8
-
-
Schiml, S.1
Puchta, H.2
-
80
-
-
24744454355
-
High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene
-
Shaked, H., Melamed-Bessudo, C., and Levy, A. A. (2005). High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene. Proc. Natl. Acad. Sci. U.S.A. 102, 12265–12269. doi: 10.1073/pnas.0502601102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 12265-12269
-
-
Shaked, H.1
Melamed-Bessudo, C.2
Levy, A.A.3
-
81
-
-
84880737219
-
Rapid and efficient gene modification in rice and Brachypodium using TALENs
-
Shan, Q., Wang, Y., Chen, K., Liang, Z., Li, J., Zhang, Y., et al. (2013). Rapid and efficient gene modification in rice and Brachypodium using TALENs. Mol. Plant 6, 1365–1368. doi: 10.1093/mp/sss162
-
(2013)
Mol. Plant
, vol.6
, pp. 1365-1368
-
-
Shan, Q.1
Wang, Y.2
Chen, K.3
Liang, Z.4
Li, J.5
Zhang, Y.6
-
82
-
-
84981744893
-
ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions
-
Epub ahead of print]
-
Shi, J., Gao, H., Wang, H., Lafitte, H. R., Archibald, R. L., Yang, M., et al. (2016). ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions. Plant Biotechnol. J. doi: 10.1111/pbi.12603 [Epub ahead of print]
-
(2016)
Plant Biotechnol. J
-
-
Shi, J.1
Gao, H.2
Wang, H.3
Lafitte, H.R.4
Archibald, R.L.5
Yang, M.6
-
83
-
-
84922264247
-
Positive–negative-selection-mediated gene targeting in rice
-
Shimatani, Z., Nishizawa-Yokoi, A., Endo, M., Toki, S., and Terada, R. (2015). Positive–negative-selection-mediated gene targeting in rice. Front. Plant Sci. 5:748. doi: 10.3389/fpls.2014.00748
-
(2015)
Front. Plant Sci
, vol.5
, pp. 748
-
-
Shimatani, Z.1
Nishizawa-Yokoi, A.2
Endo, M.3
Toki, S.4
Terada, R.5
-
84
-
-
33750037927
-
Agrobacterium-mediated transformation of cereals: A promising approach crossing barriers
-
Shrawat, A. K., and Lorz, H. (2006). Agrobacterium-mediated transformation of cereals: a promising approach crossing barriers. Plant Biotechnol. J. 4, 575–603. doi: 10.1111/j.1467-7652.2006.00209.x
-
(2006)
Plant Biotechnol. J
, vol.4
, pp. 575-603
-
-
Shrawat, A.K.1
Lorz, H.2
-
85
-
-
66249147273
-
Precise genome modification in the crop species Zea mays using zinc-finger nucleases
-
Shukla, V. K., Doyon, Y., Miller, J. C., Dekelver, R. C., Moehle, E. A., Worden, S. E., et al. (2009). Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature 459, 437–441. doi: 10.1038/nature07992
-
(2009)
Nature
, vol.459
, pp. 437-441
-
-
Shukla, V.K.1
Doyon, Y.2
Miller, J.C.3
Dekelver, R.C.4
Moehle, E.A.5
Worden, S.E.6
-
86
-
-
0036016441
-
Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome
-
Siebert, R., and Puchta, H. (2002). Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome. Plant Cell 14, 1121–1131. doi: 10.1105/tpc.001727
-
(2002)
Plant Cell
, vol.14
, pp. 1121-1131
-
-
Siebert, R.1
Puchta, H.2
-
87
-
-
0034283804
-
Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains
-
Smith, J., Bibikova, M., Whitby, F. G., Reddy, A. R., Chandrasegaran, S., and Carroll, D. (2000). Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Res. 28, 3361–3369. doi: 10.1093/nar/28.17.3361
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3361-3369
-
-
Smith, J.1
Bibikova, M.2
Whitby, F.G.3
Reddy, A.R.4
Chandrasegaran, S.5
Carroll, D.6
-
88
-
-
84963769440
-
Homology-based double-strand break-induced genome engineering in plants
-
Steinert, J., Schiml, S., and Puchta, H. (2016). Homology-based double-strand break-induced genome engineering in plants. Plant Cell. Rep. 35, 1429–1438. doi: 10.1007/s00299-016-1981-3
-
(2016)
Plant Cell. Rep
, vol.35
, pp. 1429-1438
-
-
Steinert, J.1
Schiml, S.2
Puchta, H.3
-
89
-
-
84962407106
-
Engineering herbicide-resistant rice plants through CRISPR/Cas9-mediated homologous recombination of acetolactate synthase
-
Sun, Y., Zhang, X., Wu, C., He, Y., Ma, Y., Hou, H., et al. (2016). Engineering herbicide-resistant rice plants through CRISPR/Cas9-mediated homologous recombination of acetolactate synthase. Mol. Plant 9, 628–631. doi: 10.1016/j. molp.2016.01.001
-
(2016)
Mol. Plant
, vol.9
, pp. 628-631
-
-
Sun, Y.1
Zhang, X.2
Wu, C.3
He, Y.4
Ma, Y.5
Hou, H.6
-
90
-
-
84942901283
-
Targeted mutagenesis, precise gene editing, and site-specific gene insertion in maize using Cas9 and guide RNA
-
Svitashev, S., Young, J. K., Schwartz, C., Gao, H., Falco, S. C., and Cigan, A. M. (2015). Targeted mutagenesis, precise gene editing, and site-specific gene insertion in maize using Cas9 and guide RNA. Plant Physiol. 169, 931–945. doi: 10.1104/pp.15.00793
-
(2015)
Plant Physiol
, vol.169
, pp. 931-945
-
-
Svitashev, S.1
Young, J.K.2
Schwartz, C.3
Gao, H.4
Falco, S.C.5
Cigan, A.M.6
-
91
-
-
80755187806
-
Double-strand break end resection and repair pathway choice
-
Symington, L. S., and Gautier, J. (2011). Double-strand break end resection and repair pathway choice. Annu. Rev. Genet. 45, 247–271. doi: 10.1146/annurev-genet-110410-132435
-
(2011)
Annu. Rev. Genet
, vol.45
, pp. 247-271
-
-
Symington, L.S.1
Gautier, J.2
-
92
-
-
34250620130
-
Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics
-
Terada, R., Johzuka-Hisatomi, Y., Saitoh, M., Asao, H., and Iida, S. (2007). Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics. Plant Physiol. 144, 846–856. doi: 10.1104/pp.107. 095992
-
(2007)
Plant Physiol
, vol.144
, pp. 846-856
-
-
Terada, R.1
Johzuka-Hisatomi, Y.2
Saitoh, M.3
Asao, H.4
Iida, S.5
-
93
-
-
0036787546
-
Efficient gene targeting by homologous recombination in rice
-
Terada, R., Urawa, H., Inagaki, Y., Tsugane, K., and Iida, S. (2002). Efficient gene targeting by homologous recombination in rice. Nat. Biotechnol. 20, 1030–1034. doi: 10.1038/nbt737
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 1030-1034
-
-
Terada, R.1
Urawa, H.2
Inagaki, Y.3
Tsugane, K.4
Iida, S.5
-
94
-
-
0028068772
-
Agrobacterium tumefaciens transfers single stranded T-DNA into the plant cell nucleus
-
Tinland, B., Hohn, B., and Puchta, H. (1994). Agrobacterium tumefaciens transfers single stranded T-DNA into the plant cell nucleus. Proc. Natl. Acad. Sci. U.S.A. 91, 8000–8004. doi: 10.1073/pnas.91.17.8000
-
(1994)
Proc. Natl. Acad. Sci. U.S.A
, vol.91
, pp. 8000-8004
-
-
Tinland, B.1
Hohn, B.2
Puchta, H.3
-
95
-
-
66249093890
-
High-frequency modification of plant genes using engineered zinc-finger nucleases
-
Townsend, J. A., Wright, D. A., Winfrey, R. J., Fu, F., Maeder, M. L., Joung, J. K., et al. (2009). High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature 459, 442–445. doi: 10.1038/nature07845
-
(2009)
Nature
, vol.459
, pp. 442-445
-
-
Townsend, J.A.1
Wright, D.A.2
Winfrey, R.J.3
Fu, F.4
Maeder, M.L.5
Joung, J.K.6
-
96
-
-
84903317244
-
Precision genome engineering and agriculture: Opportunities and regulatory challenges
-
Voytas, D. F., and Gao, C. (2014). Precision genome engineering and agriculture: opportunities and regulatory challenges. PLoS Biol. 12:e1001877. doi: 10.1371/ journal.pbio.1001877
-
(2014)
Plos Biol
, vol.12
-
-
Voytas, D.F.1
Gao, C.2
-
97
-
-
84921934205
-
Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew
-
Wang, Y., Cheng, X., Shan, Q., Zhang, Y., Liu, J., Gao, C., et al. (2014). Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew. Nat. Biotechnol. 32, 947–951. doi: 10. 1038/nbt.2969
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 947-951
-
-
Wang, Y.1
Cheng, X.2
Shan, Q.3
Zhang, Y.4
Liu, J.5
Gao, C.6
-
98
-
-
84939191325
-
Use of designer nucleases for targeted gene and genome editing in plants
-
Weeks, D. P., Spalding, M. H., and Yang, B. (2016). Use of designer nucleases for targeted gene and genome editing in plants. Plant Biotechnol. J. 14, 483–495. doi: 10.1111/pbi.12448
-
(2016)
Plant Biotechnol. J
, vol.14
, pp. 483-495
-
-
Weeks, D.P.1
Spalding, M.H.2
Yang, B.3
-
99
-
-
84877033242
-
Nonhomologous end joining-mediated gene replacement in plant cells
-
Weinthal, D. M., Taylor, R. A., and Tzfira, T. (2013). Nonhomologous end joining-mediated gene replacement in plant cells. Plant Physiol. 162, 390–400. doi: 10.1104/pp.112.212910
-
(2013)
Plant Physiol
, vol.162
, pp. 390-400
-
-
Weinthal, D.M.1
Taylor, R.A.2
Tzfira, T.3
-
100
-
-
33644693285
-
High-frequency homologous recombination in plants mediated by zinc-finger nucleases
-
Wright, D. A., Townsend, J. A., Winfrey, R. J., Irwin, P. A., Rajagopal, J., Lonosky, P. M., et al. (2005). High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J. 44, 693–705. doi: 10.1111/j.1365-313X.2005.02551.x
-
(2005)
Plant J
, vol.44
, pp. 693-705
-
-
Wright, D.A.1
Townsend, J.A.2
Winfrey, R.J.3
Irwin, P.A.4
Rajagopal, J.5
Lonosky, P.M.6
-
101
-
-
84925262435
-
Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system
-
Xie, K., Minkenberg, B., and Yang, Y. (2015). Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc. Natl. Acad. Sci. U.S.A. 112, 3570–3575. doi: 10.1073/pnas.1420294112
-
(2015)
Proc. Natl. Acad. Sci. U.S.A
, vol.112
, pp. 3570-3575
-
-
Xie, K.1
Minkenberg, B.2
Yang, Y.3
-
102
-
-
70349868188
-
Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice
-
Yamauchi, T., Johzuka-Hisatomi, Y., Fukada-Tanaka, S., Terada, R., Nakamura, I., and Iida, S. (2009). Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice. Plant J. 60, 386–396. doi: 10.1111/j.1365-313X.2009.03947.x
-
(2009)
Plant J
, vol.60
, pp. 386-396
-
-
Yamauchi, T.1
Johzuka-Hisatomi, Y.2
Fukada-Tanaka, S.3
Terada, R.4
Nakamura, I.5
Iida, S.6
-
103
-
-
84975678715
-
Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system
-
Zetsche, B., Gootenberg, J. S., Abudayyeh, O. O., Slaymaker, I. M., Makarova, K. S., Essletzbichler, P., et al. (2015). Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163, 759–771. doi: 10.1016/j.cell.2015.09.038
-
(2015)
Cell
, vol.163
, pp. 759-771
-
-
Zetsche, B.1
Gootenberg, J.S.2
Abudayyeh, O.O.3
Slaymaker, I.M.4
Makarova, K.S.5
Essletzbichler, P.6
-
104
-
-
77955395799
-
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases
-
Zhang, F., Maeder, M. L., Unger-Wallace, E., Hoshaw, J. P., Reyon, D., Christian, M., et al. (2010). High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases. Proc. Natl. Acad. Sci. U.S.A. 107, 12028–12033. doi: 10.1073/pnas.0914991107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A
, vol.107
, pp. 12028-12033
-
-
Zhang, F.1
Maeder, M.L.2
Unger-Wallace, E.3
Hoshaw, J.P.4
Reyon, D.5
Christian, M.6
-
105
-
-
79953783824
-
Targeted mutagenesis in Arabidopsis using zinc-finger nucleases
-
Zhang, F., and Voytas, D. F. (2011). Targeted mutagenesis in Arabidopsis using zinc-finger nucleases. Methods Mol. Biol. 701, 167–177. doi: 10.1007/978-1-61737-957-4_9
-
(2011)
Methods Mol. Biol
, vol.701
, pp. 167-177
-
-
Zhang, F.1
Voytas, D.F.2
-
106
-
-
84871803423
-
Transcription activator-like effector nucleases enable efficient plant genome engineering
-
Zhang, Y., Zhang, F., Li, X., Baller, J. A., Qi, Y., Starker, C. G., et al. (2013). Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiol. 161, 20–27. doi: 10.1104/pp.112.205179
-
(2013)
Plant Physiol
, vol.161
, pp. 20-27
-
-
Zhang, Y.1
Zhang, F.2
Li, X.3
Baller, J.A.4
Qi, Y.5
Starker, C.G.6
-
107
-
-
84921549293
-
Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice
-
Zhou, H., Liu, B., Weeks, D. P., Spalding, M. H., and Yang, B. (2014). Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Res. 42, 10903–10914. doi: 10.1093/nar/ gku806
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 10903-10914
-
-
Zhou, H.1
Liu, B.2
Weeks, D.P.3
Spalding, M.H.4
Yang, B.5
-
108
-
-
0034122866
-
Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides
-
Zhu, T., Mettenburg, K., Peterson, D. J., Tagliani, L., and Baszczynski, C. L. (2000). Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides. Nat. Biotechnol. 18, 555–558. doi: 10.1038/ 75435
-
(2000)
Nat. Biotechnol
, vol.18
, pp. 555-558
-
-
Zhu, T.1
Mettenburg, K.2
Peterson, D.J.3
Tagliani, L.4
Baszczynski, C.L.5
|