-
1
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative, 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
2
-
-
0021771482
-
Agrobacterium vectors for plant transformation
-
Bevan, M., 1984 Agrobacterium vectors for plant transformation. Nucleic Acids Res. 12: 8711-8721.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 8711-8721
-
-
Bevan, M.1
-
3
-
-
0026541957
-
Single-stranded DNA as recombination substrate in plants assessed by stable and transient expression
-
Bilang, R., A. Peterhans, A. Bogucki and J. Paszkowski, 1992 Single-stranded DNA as recombination substrate in plants assessed by stable and transient expression. Mol. Cell. Biol. 12: 329-336.
-
(1992)
Mol. Cell. Biol
, vol.12
, pp. 329-336
-
-
Bilang, R.1
Peterhans, A.2
Bogucki, A.3
Paszkowski, J.4
-
4
-
-
0033891353
-
Extensive duplication and reshuffling in the Arabidopsis genome
-
Blanc, G., A. Barakat, R. Guyot, R. Cooke and M. Delseny, 2000 Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101.
-
(2000)
Plant Cell
, vol.12
, pp. 1093-1101
-
-
Blanc, G.1
Barakat, A.2
Guyot, R.3
Cooke, R.4
Delseny, M.5
-
5
-
-
1542609271
-
Using nucleases to stimulate homologous recombination
-
Carroll, D., 2004 Using nucleases to stimulate homologous recombination. Methods Mol. Biol. 262: 195-207.
-
(2004)
Methods Mol. Biol
, vol.262
, pp. 195-207
-
-
Carroll, D.1
-
6
-
-
28544437131
-
A highly sensitive selection method for directed evolution of homing endonucleases
-
Chen, Z., and H. Zhao, 2005 A highly sensitive selection method for directed evolution of homing endonucleases. Nucleic Acids Res. 33: 1-7.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1-7
-
-
Chen, Z.1
Zhao, H.2
-
7
-
-
0026666993
-
Mechanisms of intermolecular homologous recombination in plants as studied with single-and doublestranded DNA molecules
-
DeGroot, M J A, R. Offringa, M.P. Does, P J J Hooykaasand P J.M. Van Den Elzen, 1992 Mechanisms of intermolecular homologous recombination in plants as studied with single-and doublestranded DNA molecules. Nucleic Acids Res. 20: 2785-2794.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2785-2794
-
-
Degroot, M.J.A.1
-
8
-
-
27744530147
-
Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
-
Durai, S., M. Mani, K. Kandavelou, J. Wu, M. H. Porteus et al., 2005 Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res. 33: 5978-5990.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5978-5990
-
-
Durai, S.1
Mani, M.2
Kandavelou, K.3
Wu, J.4
Porteus, M.H.5
-
9
-
-
3543111494
-
An efficient method to generate chromosomal rearrangements by targeted DNA doublestrand breaks in Drosophila melanogaster
-
Egli, D., E. Hafen and W. Schaffner, 2004 An efficient method to generate chromosomal rearrangements by targeted DNA doublestrand breaks in Drosophila melanogaster. Genome Res. 14: 1382-1393.
-
(2004)
Genome Res
, vol.14
, pp. 1382-1393
-
-
Egli, D.1
Hafen, E.2
Schaffner, W.3
-
10
-
-
15244361942
-
Chromosomal translocation mechanisms at intronic alu elements in mammalian cells
-
Elliott, B., C. Richardson and M. Jasin, 2005 Chromosomal translocation mechanisms at intronic alu elements in mammalian cells. Mol. Cell 17: 885-894.
-
(2005)
Mol. Cell
, vol.17
, pp. 885-894
-
-
Elliott, B.1
Richardson, C.2
Jasin, M.3
-
11
-
-
0026583875
-
Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated
-
Fishman-Lobell, J., N. Rudin and J. E.Haber, 1992 Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated. Mol. Cell. Biol. 12: 1292-1303.
-
(1992)
Mol. Cell. Biol
, vol.12
, pp. 1292-1303
-
-
Fishman-Lobell, J.1
Rudin, N.2
-
12
-
-
0036846180
-
The role of doublestrand break-induced allelic homologous recombination in somatic plant cells
-
Gisler, B., S. Salomon and H. Puchta, 2002 The role of doublestrand break-induced allelic homologous recombination in somatic plant cells. Plant J. 32: 277-284.
-
(2002)
Plant J
, vol.32
, pp. 277-284
-
-
Gisler, B.1
Salomon, S.2
Puchta, H.3
-
13
-
-
0030813154
-
Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions
-
Gorbunova, V., and A. A. Levy, 1997 Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Nucleic Acids Res. 25: 4650-4657.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4650-4657
-
-
Gorbunova, V.1
Levy, A.A.2
-
14
-
-
0033057606
-
How plants make ends meet: DNA double-strand break repair
-
Gorbunova, V., and A. A. Levy, 1999 How plants make ends meet: DNA double-strand break repair. Trends Plant Sci. 4: 263-269
-
(1999)
Trends Plant Sci
, vol.4
, pp. 263-269
-
-
Gorbunova, V.1
Levy, A.A.2
-
15
-
-
0034175972
-
Molecular characterization of two paralogous SPO11 homologues in Arabidopsis thaliana
-
Hartung, F., and H. Puchta, 2000 Molecular characterization of two paralogous SPO11 homologues in Arabidopsis thaliana. Nucleic Acids Res. 28: 1548-1554.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1548-1554
-
-
Hartung, F.1
Puchta, H.2
-
16
-
-
0028226641
-
High fidelity extrachromosomal recombination and gene targeting in plants
-
Hrouda, M., and J. Paszkowski, 1994 High fidelity extrachromosomal recombination and gene targeting in plants. Mol. Gen. Genet. 243: 106-111.
-
(1994)
Mol. Gen. Genet
, vol.243
, pp. 106-111
-
-
Hrouda, M.1
Paszkowski, J.2
-
17
-
-
0034675997
-
Species-specific doublestrand break repair and genome evolution in plants
-
Kirik, A., S. Salomon and H. Puchta, 2000 Species-specific doublestrand break repair and genome evolution in plants. EMBO J. 19: 5562-5566.
-
(2000)
EMBO J
, vol.19
, pp. 5562-5566
-
-
Kirik, A.1
Salomon, S.2
Puchta, H.3
-
18
-
-
0033796951
-
Cre-lox site-specific recombination between Arabidopsis and tobacco chromosomes
-
Koshinsky, H. A., E. Lee and D. W. Ow, 2000 Cre-lox site-specific recombination between Arabidopsis and tobacco chromosomes. Plant J. 23: 715-722.
-
(2000)
Plant J
, vol.23
, pp. 715-722
-
-
Koshinsky, H.A.1
Lee, E.2
Ow, D.W.3
-
19
-
-
0028352067
-
Illegitimate recombination in Xenopus: Characterization of end-joined junctions
-
Lehman, C. W., J. K. Trautman and D. Carroll, 1994 Illegitimate recombination in Xenopus: characterization of end-joined junctions. Nucleic Acids Res. 22: 434-442.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 434-442
-
-
Lehman, C.W.1
Trautman, J.K.2
Carroll, D.3
-
20
-
-
0021123453
-
Model for homologous recombination during transfer of DNA into mouse L cells: Role for DNA ends in the recombination process
-
Lin, F.-L., K. Sperle and N. Sternberg, 1984 Model for homologous recombination during transfer of DNA into mouse L cells: role for DNA ends in the recombination process. Mol. Cell. Biol. 4: 1020-1034.
-
(1984)
Mol. Cell. Biol
, vol.4
, pp. 1020-1034
-
-
Lin, F.-L.1
Sperle, K.2
Sternberg, N.3
-
21
-
-
0025176986
-
Intermolecular recombination between DNAs introduced into mouse L cells is mediated by a nonconservative pathway that leads to crossover products
-
Lin, F.-L., K. Sperle and N. Sternberg, 1990 Intermolecular recombination between DNAs introduced into mouse L cells is mediated by a nonconservative pathway that leads to crossover products. Mol. Cell. Biol. 10: 103-112.
-
(1990)
Mol. Cell. Biol
, vol.10
, pp. 103-112
-
-
Lin, F.-L.1
Sperle, K.2
Sternberg, N.3
-
22
-
-
13844319542
-
Targeted mutagenesis using zinc-finger nucleases in Arabidopsis
-
Lloyd, A., C. L. Plaisir, D. Carroll and G. N. Drews, 2005 Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proc. Natl. Acad. Sci. USA 102: 2232-2237.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2232-2237
-
-
Lloyd, A.1
Plaisir, C.L.2
Carroll, D.3
Drews, G.N.4
-
23
-
-
32544435237
-
Highly efficient sex chromosome interchanges produced by I-CreI expression in Drosophila
-
Maggert, K. A., and K. G. Golic, 2005 Highly efficient sex chromosome interchanges produced by I-CreI expression in Drosophila. Genetics 171: 1103-1114.
-
(2005)
Genetics
, vol.171
, pp. 1103-1114
-
-
Maggert, K.A.1
Golic, K.G.2
-
24
-
-
0025731948
-
Involvement of single-stranded tails in homologous recombination of DNA injected into Xenopus laevis oocyte nuclei
-
Maryon, E., and D. Carroll, 1991a Involvement of single-stranded tails in homologous recombination of DNA injected into Xenopus laevis oocyte nuclei. Mol. Cell. Biol. 11: 3268-3277.
-
(1991)
Mol. Cell. Biol
, vol.11
, pp. 3268-3277
-
-
Maryon, E.1
Carroll, D.2
-
25
-
-
0025756169
-
Characterization of recombination intermediates from DNA injected into Xenopus laevis oocytes: Evidence for a nonconservative mechanism of homologous recombination
-
Maryon, E., and D. Carroll, 1991b Characterization of recombination intermediates from DNA injected into Xenopus laevis oocytes: evidence for a nonconservative mechanism of homologous recombination. Mol. Cell. Biol. 11: 3268-3277.
-
(1991)
Mol. Cell. Biol
, vol.11
, pp. 3268-3277
-
-
Maryon, E.1
Carroll, D.2
-
26
-
-
0030471390
-
The joining of non-complementary DNA double-strand breaks by mammalian extracts
-
Mason, R. M., J. Thacker and M. P. Fairman, 1996 The joining of non-complementary DNA double-strand breaks by mammalian extracts. Nucleic Acids Res. 24: 4946-4953.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4946-4953
-
-
Mason, R.M.1
Thacker, J.2
Fairman, M.P.3
-
27
-
-
0028921338
-
A modified singlestrand annealing model best explains the joining of DNA doublestrand breaks in mammalian cells and cell extracts
-
Nicolas, A. L., P. L. Munz and C. S. Young, 1995 A modified singlestrand annealing model best explains the joining of DNA doublestrand breaks in mammalian cells and cell extracts. Nucleic Acids Res. 23: 1036-1043.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1036-1043
-
-
Nicolas, A.L.1
Munz, P.L.2
Young, C.S.3
-
28
-
-
0141681133
-
Different pathways of homologous recombination are used for the repair of doublestrand breaks within tandemly arranged sequences in the plant genome
-
Orel, N., A. Kirik and H. Puchta, 2003 Different pathways of homologous recombination are used for the repair of doublestrand breaks within tandemly arranged sequences in the plant genome. Plant J. 35: 604-612.
-
(2003)
Plant J
, vol.35
, pp. 604-612
-
-
Orel, N.1
Kirik, A.2
Puchta, H.3
-
29
-
-
0036007695
-
Recombinase-directed plant transformation for the post-genomic era
-
Ow, D.W., 2002 Recombinase-directed plant transformation for the post-genomic era. Plant Mol. Biol. 48: 183-200.
-
(2002)
Plant Mol. Biol
, vol.48
, pp. 183-200
-
-
Ow, D.W.1
-
30
-
-
0026002496
-
The mechanism of extrachromosomal homologous DNA recombination in plant cells
-
Puchta, H., and B. Hohn, 1991 The mechanism of extrachromosomal homologous DNA recombination in plant cells. Mol. Gen. Genet. 230: 1-7.
-
(1991)
Mol. Gen. Genet
, vol.230
, pp. 1-7
-
-
Puchta, H.1
Hohn, B.2
-
31
-
-
0031931359
-
Repair of genomic double-strand breaks in somatic plant cells by one-sided invasion of homologous sequences
-
Puchta, H., 1998 Repair of genomic double-strand breaks in somatic plant cells by one-sided invasion of homologous sequences. Plant J. 13: 331-339.
-
(1998)
Plant J
, vol.13
, pp. 331-339
-
-
Puchta, H.1
-
32
-
-
0032779205
-
DSB-induced recombination between ectopic homologous sequences insomaticplantcells
-
Puchta, H., 1999a DSB-induced recombination between ectopic homologous sequences insomaticplantcells.Genetics 152:1173-1181
-
(1999)
Genetics
, vol.152
, pp. 1173-1181
-
-
Puchta, H.1
-
33
-
-
0032618491
-
Use of I-SceI to induce double-strand breaks in Nicotiana
-
Puchta, H., 1999b Use of I-SceI to induce double-strand breaks in Nicotiana. Methods Mol. Biol. 113: 447-451.
-
(1999)
Methods Mol. Biol
, vol.113
, pp. 447-451
-
-
Puchta, H.1
-
34
-
-
0037704340
-
Marker-free transgenic plants
-
Puchta, H., 2003 Marker-free transgenic plants. Plant Cell Tissue Organ Cult. 74: 123-134.
-
(2003)
Plant Cell Tissue Organ Cult
, vol.74
, pp. 123-134
-
-
Puchta, H.1
-
35
-
-
11444267813
-
The repair of double-strand breaks in plants: Mechanisms and consequences for genome evolution
-
Puchta, H., 2005 The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. J. Exp. Bot. 56: 1-14.
-
(2005)
J. Exp. Bot
, vol.56
, pp. 1-14
-
-
Puchta, H.1
-
36
-
-
0027384567
-
Homologous recombination in plant cells is enhanced by in vivo induction of doublestrand breaks into DNA by a site-specific endonuclease
-
Puchta, H., B. Dujon and B. Hohn, 1993 Homologous recombination in plant cells is enhanced by in vivo induction of doublestrand breaks into DNA by a site-specific endonuclease. Nucleic Acids Res. 21: 5034-5040.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5034-5040
-
-
Puchta, H.1
Dujon, B.2
Hohn, B.3
-
37
-
-
0029946668
-
Two different but related mechanisms are used in plants for the repair of genomic doublestrand breaks by homologous recombination
-
Puchta, H., B. Dujon and B. Hohn, 1996 Two different but related mechanisms are used in plants for the repair of genomic doublestrand breaks by homologous recombination. Proc. Natl. Acad. Sci. USA 93: 5055-5060.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5055-5060
-
-
Puchta, H.1
Dujon, B.2
Hohn, B.3
-
38
-
-
0028345402
-
Cre recombinase-mediated site-specific recombination between plant chromosomes
-
Qin, M., C. Bayley, T. Stockton and D. W. Ow, 1994 Cre recombinase-mediated site-specific recombination between plant chromosomes. Proc. Natl. Acad. Sci. USA 91: 1706-1710.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1706-1710
-
-
Qin, M.1
Bayley, C.2
Stockton, T.3
Ow, D.W.4
-
39
-
-
0344012550
-
Homologous recombination and gene targeting in plant cells
-
Reiss, B., 2003 Homologous recombination and gene targeting in plant cells. Int. Rev. Cytol. 228: 85-139.
-
(2003)
Int. Rev. Cytol
, vol.228
, pp. 85-139
-
-
Reiss, B.1
-
40
-
-
0034724291
-
RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium
-
Reiss, B., I. Schubert, K. Köpchen, E Wendeler, J. Schell et al., 2000 RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium. Proc. Natl. Acad. Sci. USA 97: 3358-3363.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3358-3363
-
-
Reiss, B.1
Schubert, I.2
Köpchen, K.3
Wendeler, E.4
Schell, J.5
-
41
-
-
0034621854
-
Frequent chromosomal translocations induced by DNA double-strand breaks
-
Richardson, C., and M. Jasin, 2000 Frequent chromosomal translocations induced by DNA double-strand breaks. Nature 405: 697-700.
-
(2000)
Nature
, vol.405
, pp. 697-700
-
-
Richardson, C.1
Jasin, M.2
-
42
-
-
0032531757
-
Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells
-
Salomon, S., and H. Puchta, 1998 Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. EMBO J. 17: 6086-6095.
-
(1998)
EMBO J
, vol.17
, pp. 6086-6095
-
-
Salomon, S.1
Puchta, H.2
-
43
-
-
13944266797
-
The dual nature of homologous recombination in plants
-
Schuermann, D., J. Molinier, O. Fritsch and B. Hohn, 2005 The dual nature of homologous recombination in plants. Trends Genet. 21: 172-181.
-
(2005)
Trends Genet
, vol.21
, pp. 172-181
-
-
Schuermann, D.1
Molinier, J.2
Fritsch, O.3
Hohn, B.4
-
44
-
-
0030749948
-
The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence
-
Shalev, G., and A. A. Levy, 1997 The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence. Genetics 146: 1143-1151.
-
(1997)
Genetics
, vol.146
, pp. 1143-1151
-
-
Shalev, G.1
Levy, A.A.2
-
45
-
-
0036016441
-
Efficient repair of genomic doublestrand breaks via homologous recombination between directly repeated sequences in the plant genome
-
Siebert, R., and H. Puchta, 2002 Efficient repair of genomic doublestrand breaks via homologous recombination between directly repeated sequences in the plant genome. Plant Cell 14: 1121-1131.
-
(2002)
Plant Cell
, vol.14
, pp. 1121-1131
-
-
Siebert, R.1
Puchta, H.2
-
46
-
-
15544383703
-
Detection of chromosomal rearrangements derived from homeologous recombination in four mapping populations of Brassica napus L
-
Udall, J. A., P. A. Quijada and T. C. Osborn, 2005 Detection of chromosomal rearrangements derived from homeologous recombination in four mapping populations of Brassica napus L. Genetics 169: 967-979.
-
(2005)
Genetics
, vol.169
, pp. 967-979
-
-
Udall, J.A.1
Quijada, P.A.2
Osborn, T.C.3
-
47
-
-
33644693285
-
High-frequency homologous recombination in plants mediated by zinc-finger nucleases
-
Wright, D. A., J. A. Townsend, R. J. Winfrey, Jr P. A. Irwin, J. Rajagopal et al., 2005 High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J. 44: 693-705.
-
(2005)
Plant J
, vol.44
, pp. 693-705
-
-
Wright, D.A.1
Townsend, J.A.2
Winfrey, R.J.3
Irwin, P.A.4
Rajagopal, J.5
-
48
-
-
0033826179
-
Intrachromosomal homologous recombination in Arabidopsis induced by a maize transposon
-
Xiao, Y. L., and T. Peterson, 2000 Intrachromosomal homologous recombination in Arabidopsis induced by a maize transposon. Mol. Gen. Genet. 263: 22-29.
-
(2000)
Mol. Gen. Genet
, vol.263
, pp. 22-29
-
-
Xiao, Y.L.1
Peterson, T.2
-
49
-
-
1642385754
-
Reciprocal translocations in Saccharomyces cerevisiae formed by nonhomologous end joining
-
Yu, X., and A. Gabriel, 2004 Reciprocal translocations in Saccharomyces cerevisiae formed by nonhomologous end joining. Genetics 166: 741-751.
-
(2004)
Genetics
, vol.166
, pp. 741-751
-
-
Yu, X.1
Gabriel, A.2
|