메뉴 건너뛰기




Volumn 5, Issue JAN, 2015, Pages

Positive-negative-selection-mediated gene targeting in rice

Author keywords

Gene editing; Genetargeting; Homologous recombination; Knock in; Marker free; Positive negative selection; Rice; Site specific recombination

Indexed keywords

EMBRYOPHYTA;

EID: 84922264247     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2014.00748     Document Type: Article
Times cited : (38)

References (40)
  • 1
    • 0013187276 scopus 로고    scopus 로고
    • Re-engineering plant gene targeting
    • Britt, A. B., and May, G. D. (2003). Re-engineering plant gene targeting. TrendsPlant Sci. 8, 90-95. doi: 10.1016/S1360-1385(03)00002-5
    • (2003) Trendsplant Sci , vol.8 , pp. 90-95
    • Britt, A.B.1    May, G.D.2
  • 2
    • 0024449118 scopus 로고
    • Transposon mutagenesis of baculoviruses: Analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses
    • Cary, L. C., Goebel, M., Corsaro, B. G., Wang, H. G., Rosen, E., and Fraser, M. J. (1989). Transposon mutagenesis of baculoviruses: analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses. Virology 172, 156-169. doi: 10.1016/0042-6822(89)90117-7
    • (1989) Virology , vol.172 , pp. 156-169
    • Cary, L.C.1    Goebel, M.2    Corsaro, B.G.3    Wang, H.G.4    Rosen, E.5    Fraser, M.J.6
  • 3
    • 84890490622 scopus 로고    scopus 로고
    • Gene editing; a constitutively active OsRac1 by homologous recombination based gene targeting induces immune responses in rice
    • Dang, T. T., Shimatani, Z., Kawano, Y., Terada, R., and Shimamoto, K. (2013). Gene editing; a constitutively active OsRac1 by homologous recombination based gene targeting induces immune responses in rice. Plant Cell Physiol. 54, 2058-2070. doi: 10.1093/pcp/pct147
    • (2013) Plant Cell Physiol , vol.54 , pp. 2058
    • Dang, T.T.1    Shimatani, Z.2    Kawano, Y.3    Terada, R.4    Shimamoto, K.5
  • 4
    • 0031105085 scopus 로고    scopus 로고
    • Cell ablation and the analysis of plant development
    • Day, C. D., and Irish, V. F. (1997).Cell ablation and the analysis of plant development. TrendsPlantSci. 2, 106-111. doi: 10.1016/S1360-1385(97)01004-2
    • (1997) Trendsplantsci , vol.2 , pp. 106-111
    • Day, C.D.1    Irish, V.F.2
  • 5
    • 34748901919 scopus 로고    scopus 로고
    • Molecular breeding of a novel herbicide-tolerant rice by gene targeting
    • Endo, M., Osakabe, K., Ono, K., Handa, H., Shimizu, T., and Toki, S. (2007). Molecular breeding of a novel herbicide-tolerant rice by gene targeting. Plant J. 52, 157-166. doi: 10.1111/j.1365-313X.2007.03230.x
    • (2007) Plant J , vol.52 , pp. 157-166
    • Endo, M.1    Osakabe, K.2    Ono, K.3    Handa, H.4    Shimizu, T.5    Toki, S.6
  • 6
    • 84894257656 scopus 로고    scopus 로고
    • Toward establishing an efficient and versatile gene targeting system in higher plants. Biocatal. Agric
    • Endo, M., and Toki, S. (2014).Toward establishing an efficient and versatile gene targeting system in higher plants. Biocatal. Agric. Biotechnol. 3, 2-6. doi: 10.1016/j.bcab.2013.10.002
    • (2014) Biotechnol , vol.3 , pp. 2-6
    • Endo, M.1    Toki, S.2
  • 7
    • 0032991835 scopus 로고    scopus 로고
    • Positive-negativeselection and T-DNA stability in Arabidopsis transformation
    • Gallego, M. E., Sirand-Pugnet, P., andWhite, C. I. (1999). Positive-negativeselection and T-DNA stability in Arabidopsis transformation. Plant Mol. Biol. 39, 83-93. doi: 10.1023/A:1006192225464
    • (1999) Plant Mol. Biol , vol.39 , pp. 83-93
    • Gallego, M.E.1    Sirand-Pugnet, P.2    White, C.I.3
  • 8
    • 0028483231 scopus 로고
    • Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA
    • Hiei, Y., Ohta, S., Komari, T., and Kumashiro, T. (1994). Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J. 6, 271-282. doi: 10.1046/j.1365-313X.1994.6020271.x
    • (1994) Plant J , vol.6 , pp. 271-282
    • Hiei, Y.1    Ohta, S.2    Komari, T.3    Kumashiro, T.4
  • 9
    • 1842764873 scopus 로고    scopus 로고
    • Atale of two integrations, transgene and T-DNA:Gene targetingbyhomologousrecombinationinrice
    • Iida, S., and Terada, R. (2004).Atale of two integrations, transgene and T-DNA:gene targetingbyhomologousrecombinationinrice. Curr. Opin. Biotechnol. 15,132138. doi: 10.1016/j.copbio.2004.02.005
    • (2004) Curr. Opin. Biotechnol , vol.15
    • Iida, S.1    Terada, R.2
  • 10
    • 26444579290 scopus 로고    scopus 로고
    • Modification of endogenous natural genes bygene targeting in rice and other higher plants
    • Iida, S., and Terada, R. (2005). Modification of endogenous natural genes bygene targeting in rice and other higher plants. Plant Mol. Biol. 59, 205-219. doi: 10.1007/s11103-005-2162-x
    • (2005) Plant Mol. Biol , vol.59 , pp. 205-219
    • Iida, S.1    Terada, R.2
  • 12
    • 49249114175 scopus 로고    scopus 로고
    • Efficient transfer of base changes fromavector to therice genome byhomologous recombination: Involvement of heteroduplex formation and mismatch correction
    • Johzuka-Hisatomi, Y., Terada, R., and Iida, S. (2008). Efficient transfer of base changes fromavector to therice genome byhomologous recombination: involvement of heteroduplex formation and mismatch correction. NucleicAcids Res. 36, 4727-4735. doi: 10.1093/nar/gkn451
    • (2008) Nucleicacids Res , vol.36 , pp. 4727-4735
    • Johzuka-Hisatomi, Y.1    Terada, R.2    Iida, S.3
  • 13
    • 27244444230 scopus 로고    scopus 로고
    • The plant VirE2 interacting protein 1. A molecular link between the Agrobacterium T-complex and the host cell chromatin?
    • Loyter, A., Rosenbluh, J., Zakai, N., Li, J., Kozlovsky, S.V., Tzfira, T., et al. (2005). The plant VirE2 interacting protein 1. A molecular link between the Agrobacterium T-complex and the host cell chromatin? Plant Physiol. 138, 1318-1321. doi: 10.1104/pp.105.062547
    • (2005) Plant Physiol , vol.138 , pp. 1318-1321
    • Loyter, A.1    Rosenbluh, J.2    Zakai, N.3    Li, J.4    Kozlovsky, S.V.5    Tzfira, T.6
  • 14
    • 3142668353 scopus 로고    scopus 로고
    • Alanine-scanning mutagenesis reveals a cytosine deaminase mutant with alteredsubstrate preference
    • Mahan, S. D., Ireton, G. C., Stoddard, B. L., and Black, M. E. (2004). Alanine-scanning mutagenesis reveals a cytosine deaminase mutant with alteredsubstrate preference. Biochemistry 43, 8957-8964. doi: 10.1021/bi049720z
    • (2004) Biochemistry , vol.43 , pp. 8957-8964
    • Mahan, S.D.1    Ireton, G.C.2    Stoddard, B.L.3    Black, M.E.4
  • 15
    • 0024296027 scopus 로고
    • Disruption of the proto-oncogene int-2 in mouse embryo-derived stem cells: A general strategy for targeting mutations to non-selectable genes
    • Mansour, S. L., Thomas, K. R., and Capecchi, M. R. (1988). Disruption of the proto-oncogene int-2 in mouse embryo-derived stem cells: a general strategy for targeting mutations to non-selectable genes. Nature 336, 348-352. doi: 10.1038/336348a0
    • (1988) Nature , vol.336 , pp. 348-352
    • Mansour, S.L.1    Thomas, K.R.2    Capecchi, M.R.3
  • 16
    • 84862580050 scopus 로고    scopus 로고
    • Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
    • Moritoh, S., Eun, C. H., Ono, A., Asao, H., Okano, Y., Yamaguchi, K., etal. (2012). Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation. Plant J. 71, 85-98. doi: 10.1111/j.1365-313X.2012.04974.x
    • (2012) Plant J , vol.71 , pp. 85-98
    • Moritoh, S.1    Eun, C.H.2    Ono, A.3    Asao, H.4    Okano, Y.5    Yamaguchi, K.6
  • 17
    • 84893705393 scopus 로고    scopus 로고
    • Precise marker excision system using an animal-derived piggyBac transposon in plants
    • Nishizawa-Yokoi, A., Endo, M., Osakabe, K., Saika, H., and Toki, S. (2014a). Precise marker excision system using an animal-derived piggyBac transposon in plants. PlantJ. 77, 454-463. doi: 10.1111/tpj.12367
    • (2014) Plantj , vol.77 , pp. 454-463
    • Nishizawa-Yokoi, A.1    Endo, M.2    Osakabe, K.3    Saika, H.4    Toki, S.5
  • 18
    • 84920157052 scopus 로고    scopus 로고
    • Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision
    • Epubaheadofprint
    • Nishizawa-Yokoi, A., Endo, M., Ohtsuki, N., Saika, H., and Toki, S. (2014b). Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision. PlantJ. doi: 10.1111/tpj.12693[Epubaheadofprint].
    • (2014) Plantj
    • Nishizawa-Yokoi, A.1    Endo, M.2    Ohtsuki, N.3    Saika, H.4    Toki, S.5
  • 19
    • 2442552190 scopus 로고
    • Gene targeting in plants
    • in Gene Targeting, ed., Boca Raton, FL: CRC Press
    • Offringa, R., and Hooykaas, P. (1995) “Gene targeting in plants,” in Gene Targeting, ed. M. A. Vega (Boca Raton, FL: CRC Press), 84-121.
    • (1995) M. A. Vega , pp. 84-121
    • Offringa, R.1    Hooykaas, P.2
  • 20
    • 84864617168 scopus 로고    scopus 로고
    • A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny
    • Ono, A., Yamaguchi, K., Fukada-Tanaka, S., Terada, R., Mitsui, T., and Iida, S. A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny. PlantJ. 71, 564-574. doi: 10.1111/j.1365-313X.2012.05009.x
    • Plantj , vol.71 , pp. 564-574
    • Ono, A.1    Yamaguchi, K.2    Fukada-Tanaka, S.3    Terada, R.4    Mitsui, T.5    Iida, S.6
  • 22
    • 84899064952 scopus 로고    scopus 로고
    • A mutated cytosine deaminase gene, codA (D314a), as an efficient negative selection marker for gene targeting in rice
    • Osakabe, K., Nishizawa-Yokoi, A., Ohtsuki, N., Osakabe, Y., and Toki, S. (2014). A mutated cytosine deaminase gene, codA (d314a), as an efficient negative selection marker for gene targeting in rice. Plant Cell Physiol. 55, 658-665. doi: 10.1093/pcp/pct183
    • (2014) Plant Cell Physiol , vol.55 , pp. 658-665
    • Osakabe, K.1    Nishizawa-Yokoi, A.2    Ohtsuki, N.3    Osakabe, Y.4    Toki, S.5
  • 23
    • 84859781058 scopus 로고    scopus 로고
    • Development of an efficient Agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts laking Granule-bound starch synthase (Waxy) and ^1,2-Xylosyltransferase
    • Ozawa, K., Wakasa, Y., Ogo, Y., Matsuo, K., Kawahigashi, H., and Takaiwa, F. (2012). Development of an efficient Agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts laking Granule-bound starch synthase (waxy) and ^1,2-Xylosyltransferase. Plant Cell Physiol. 53, 755-761. doi: 10.1093/pcp/pcs016
    • (2012) Plant Cell Physiol , vol.53 , pp. 755-761
    • Ozawa, K.1    Wakasa, Y.2    Ogo, Y.3    Matsuo, K.4    Kawahigashi, H.5    Takaiwa, F.6
  • 24
    • 0017620769 scopus 로고
    • Diphtheria toxin
    • Pappenheimer, A. M. (1977). Diphtheria toxin. Annu. Rev. Biochem. 46, 69-94. doi: 10.1146/annurev.bi.46.070177.000441
    • (1977) Annu. Rev. Biochem , vol.46 , pp. 69-94
    • Pappenheimer, A.M.1
  • 25
    • 0000976249 scopus 로고
    • Gene targeting in plants
    • Paszkowski, J., Baur, M., Bogucki, A., and Potrykus, I. (1988). Gene targeting in plants. EMBO J. 7, 4021-4026. doi: 10.1387/ijdb.130194hp
    • (1988) EMBO J , vol.7 , pp. 4021-4026
    • Paszkowski, J.1    Baur, M.2    Bogucki, A.3    Potrykus, I.4
  • 26
    • 0032779205 scopus 로고    scopus 로고
    • Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells
    • Puchta, H. (1999). Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells. Genetics 152, 1173-1181.
    • (1999) Genetics , vol.152 , pp. 1173-1181
    • Puchta, H.1
  • 27
    • 84901386271 scopus 로고    scopus 로고
    • Synthetic nucleases for genome engineering in plants: Prospects for a bright future
    • Puchta, H., and Fauser, F. (2014). Synthetic nucleases for genome engineering in plants: prospects for a bright future. Plant J. 78, 727-741. doi: 10.1111/tpj.12338
    • (2014) Plant J , vol.78 , pp. 727-741
    • Puchta, H.1    Fauser, F.2
  • 28
    • 24744454355 scopus 로고    scopus 로고
    • High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene
    • Shaked, H., Melamed-Bessudo, C., and Levy, A. A. (2005). High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene. Proc. Natl. Acad. Sci. U.S.A. 102,12265-12269. doi: 10.1073/pnas.0502601102
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 12265-12269
    • Shaked, H.1    Melamed-Bessudo, C.2    Levy, A.A.3
  • 29
    • 66249147273 scopus 로고    scopus 로고
    • Precise genome modification in the crop species Zea mays using zinc-finger nucleases
    • Shukla, V. K., Doyon, Y., Miller, J. C., DeKelver, R. C., Moehle, E. A., Worden, S. E., etal. (2009). Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature 459, 437-441. doi: 10.1038/nature07992
    • (2009) Nature , vol.459 , pp. 437-441
    • Shukla, V.K.1    Doyon, Y.2    Miller, J.C.3    Dekelver, R.C.4    Moehle, E.A.5    Worden, S.E.6
  • 30
    • 0034084963 scopus 로고    scopus 로고
    • The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted co linearity with maize chromosome 4
    • Tarchini, R., Biddle, P., Wineland, R., Tingey, S., and Rafalski, A. (2000). The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted co linearity with maize chromosome 4. Plant Cell 12, 381-391. doi: 10.1105/tpc.12.3.381
    • (2000) Plant Cell , vol.12 , pp. 381-391
    • Tarchini, R.1    Biddle, P.2    Wineland, R.3    Tingey, S.4    Rafalski, A.5
  • 31
    • 1842720144 scopus 로고    scopus 로고
    • A large-scale Agrobacterium-mediated transformation procedure with a strong positive-negative selection for gene targeting in rice (Oryza sativa L.)
    • Terada, R., Asao, H., and Iida, S. (2004). A large-scale Agrobacterium-mediated transformation procedure with a strong positive-negative selection for gene targeting in rice (Oryza sativa L.). Plant Cell Rep. 22, 653-659. doi: 10.1007/s00299-003-0752-0
    • (2004) Plant Cell Rep , vol.22 , pp. 653-659
    • Terada, R.1    Asao, H.2    Iida, S.3
  • 32
    • 34250620130 scopus 로고    scopus 로고
    • Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics
    • Terada, R., Johzuka-Hisatomi, Y., Saitoh, M., Asao, H., and Iida, S. (2007) Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics. Plant Physiol. 144, 846-856. doi: 10.1104/pp.107.095992
    • (2007) Plant Physiol , vol.144 , pp. 846-856
    • Terada, R.1    Johzuka-Hisatomi, Y.2    Saitoh, M.3    Asao, H.4    Iida, S.5
  • 33
    • 77952908766 scopus 로고    scopus 로고
    • Cre-lox mediated marker elimination and gene reactivation at waxy locus created in the rice genome based on strong positive-negative selection
    • Terada, R., Nagahara, M., Furukawa, K., Shimamoto, M., Yamaguchi, K., and Iida, S.. Cre-lox mediated marker elimination and gene reactivation at waxy locus created in the rice genome based on strong positive-negative selection. Plant Biotechnol. 27, 29-37. doi: 10.5511/plantbiotechnology.27.29
    • Plant Biotechnol , vol.27 , pp. 29-37
    • Terada, R.1    Nagahara, M.2    Furukawa, K.3    Shimamoto, M.4    Yamaguchi, K.5    Iida, S.6
  • 34
    • 0036787546 scopus 로고    scopus 로고
    • Efficient gene targeting by homologous recombination in rice
    • Terada, R., Urawa, H., Inagaki, Y., Tsugane, K., and Iida, S. (2002). Efficient gene targeting by homologous recombination in rice. Nat. Biotechnol. 20, 1030-1034. doi: 10.1038/nbt737
    • (2002) Nat. Biotechnol , vol.20 , pp. 1030-1034
    • Terada, R.1    Urawa, H.2    Inagaki, Y.3    Tsugane, K.4    Iida, S.5
  • 35
    • 0031282664 scopus 로고    scopus 로고
    • Gene targeting approaches using positive- negative selection and large flanking regions
    • Thykjaer, T., Finnemann, J., Schauser, L., Christensen, L., Poulsen, C., and Stougaard, J. (1997). Gene targeting approaches using positive- negative selection and large flanking regions. Plant Mol. Biol. 35, 523-530. doi: 10.1023/A:1005865600319
    • (1997) Plant Mol. Biol , vol.35 , pp. 523-530
    • Thykjaer, T.1    Finnemann, J.2    Schauser, L.3    Christensen, L.4    Poulsen, C.5    Stougaard, J.6
  • 36
    • 0035844993 scopus 로고    scopus 로고
    • Positive-Negative selection for homologous recombination in Arabidopsis
    • Wang, H. X., Viret, J.-F., Eldridge, A., Perera, R., Signer, E. R., and Chiu- razzi, M. (2001). Positive-Negative selection for homologous recombination in Arabidopsis. Gene 272,249-255. doi: 10.1016/S0378-1119(01)00532-7
    • (2001) Gene , vol.272 , pp. 249-255
    • Wang, H.X.1    Viret, J.-F.2    Eldridge, A.3    Perera, R.4    Signer, E.R.5    Chiu-Razzi, M.6
  • 37
    • 70349868188 scopus 로고    scopus 로고
    • Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice
    • Yamauchi, T., Johzuka-Hisatomi, Y., Fukada-Tanaka, S., Terada, R., Nakamura, I., and Iida, S. (2009). Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice. Plant J. 60, 386-396. doi: 10.1111/j.1365-313X.2009.03947.x
    • (2009) Plant J , vol.60 , pp. 386-396
    • Yamauchi, T.1    Johzuka-Hisatomi, Y.2    Fukada-Tanaka, S.3    Terada, R.4    Nakamura, I.5    Iida, S.6
  • 38
    • 84900872783 scopus 로고    scopus 로고
    • The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice
    • Yamauchi, T., Johzuka-Hisatomi, Y., Terada, R., Nakamura, I., and Iida, S. (2014). The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice. Plant Mol. Biol. 85, 219-232. doi: 10.1007/s11103-014-0178-9
    • (2014) Plant Mol. Biol , vol.85 , pp. 219-232
    • Yamauchi, T.1    Johzuka-Hisatomi, Y.2    Terada, R.3    Nakamura, I.4    Iida, S.5
  • 39
    • 79952138028 scopus 로고    scopus 로고
    • A hyperactive piggyBac transposase for mammalian applications
    • Yusa, K., Zhou, L., Li, M., Bradley, A., and Craig, N. (2011). A hyperactive piggyBac transposase for mammalian applications. Proc. Natl. Acad. Sci. U.S.A. 108, 1531—1536. doi: 10.1073/pnas.1008322108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. 1531-1536
    • Yusa, K.1    Zhou, L.2    Li, M.3    Bradley, A.4    Craig, N.5
  • 40
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Zhang, Q., Wang, Y., Li, J., Zhang, Y., Chen, K., Liang, Z., etal. (2013). Targeted genome modification of crop plants using a CRISPR-Cas system. Nat. Biotechnol. 31, 687-688. doi: 10.1038/nbt.2650
    • (2013) Nat. Biotechnol , vol.31 , pp. 687-688
    • Zhang, Q.1    Wang, Y.2    Li, J.3    Zhang, Y.4    Chen, K.5    Liang, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.