메뉴 건너뛰기




Volumn 112, Issue 11, 2015, Pages 3570-3575

Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system

Author keywords

CRISPR Cas9; Genome editing; Multiplex; tRNA processing

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; MITOGEN ACTIVATED PROTEIN KINASE; RIBONUCLEASE P; SYNTHETIC DNA; TRANSFER RNA; GUIDE RNA;

EID: 84925262435     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1420294112     Document Type: Article
Times cited : (1081)

References (39)
  • 1
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337(6096):816-821.
    • (2012) Science , vol.337 , Issue.6096 , pp. 816-821
    • Jinek, M.1
  • 2
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong L, et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339(6121):819-823.
    • (2013) Science , vol.339 , Issue.6121 , pp. 819-823
    • Cong, L.1
  • 3
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali P, et al. (2013) RNA-guided human genome engineering via Cas9. Science 339(6121):823-826.
    • (2013) Science , vol.339 , Issue.6121 , pp. 823-826
    • Mali, P.1
  • 4
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali P, Esvelt KM, Church GM (2013) Cas9 as a versatile tool for engineering biology. Nat Methods 10(10):957-963.
    • (2013) Nat Methods , vol.10 , Issue.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 5
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-Cas systems for editing, regulating and targeting genomes
    • Sander JD, Joung JK (2014) CRISPR-Cas systems for editing, regulating and targeting genomes. Nat Biotechnol 32(4):347-355.
    • (2014) Nat Biotechnol , vol.32 , Issue.4 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 6
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu PD, Lander ES, Zhang F (2014) Development and applications of CRISPR-Cas9 for genome engineering. Cell 157(6):1262-1278.
    • (2014) Cell , vol.157 , Issue.6 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 7
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang H, et al. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153(4):910-918.
    • (2013) Cell , vol.153 , Issue.4 , pp. 910-918
    • Wang, H.1
  • 8
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • Jinek M, et al. (2013) RNA-programmed genome editing in human cells. eLife 2:e00471.
    • (2013) eLife , vol.2
    • Jinek, M.1
  • 9
    • 84883785822 scopus 로고    scopus 로고
    • Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
    • Li JF, et al. (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol 31(8):688-691.
    • (2013) Nat Biotechnol , vol.31 , Issue.8 , pp. 688-691
    • Li, J.F.1
  • 10
    • 84921549293 scopus 로고    scopus 로고
    • Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice
    • Zhou H, Liu B, Weeks DP, Spalding MH, Yang B (2014) Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Res 42(17):10903-10914.
    • (2014) Nucleic Acids Res , vol.42 , Issue.17 , pp. 10903-10914
    • Zhou, H.1    Liu, B.2    Weeks, D.P.3    Spalding, M.H.4    Yang, B.5
  • 11
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Shan Q, et al. (2013) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotechnol 31(8):686-688.
    • (2013) Nat Biotechnol , vol.31 , Issue.8 , pp. 686-688
    • Shan, Q.1
  • 12
    • 84901195977 scopus 로고    scopus 로고
    • Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells
    • Nissim L, Perli SD, Fridkin A, Perez-Pinera P, Lu TK (2014) Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell 54(4):698-710.
    • (2014) Mol Cell , vol.54 , Issue.4 , pp. 698-710
    • Nissim, L.1    Perli, S.D.2    Fridkin, A.3    Perez-Pinera, P.4    Lu, T.K.5
  • 13
    • 84902204289 scopus 로고    scopus 로고
    • Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
    • Tsai SQ, et al. (2014) Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat Biotechnol 32(6):569-576.
    • (2014) Nat Biotechnol , vol.32 , Issue.6 , pp. 569-576
    • Tsai, S.Q.1
  • 14
    • 77956276464 scopus 로고    scopus 로고
    • tRNA biology charges to the front
    • Phizicky EM, Hopper AK (2010) tRNA biology charges to the front. Genes Dev 24(17):1832-1860.
    • (2010) Genes Dev , vol.24 , Issue.17 , pp. 1832-1860
    • Phizicky, E.M.1    Hopper, A.K.2
  • 15
    • 0037013852 scopus 로고    scopus 로고
    • Assigning a function to a conserved group of proteins: The tRNA 3'-processing enzymes
    • Schiffer S, Rösch S, Marchfelder A (2002) Assigning a function to a conserved group of proteins: The tRNA 3'-processing enzymes. EMBO J 21(11):2769-2777.
    • (2002) EMBO J , vol.21 , Issue.11 , pp. 2769-2777
    • Schiffer, S.1    Rösch, S.2    Marchfelder, A.3
  • 16
    • 84861141850 scopus 로고    scopus 로고
    • PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis
    • Gutmann B, Gobert A, Giegé P (2012) PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Genes Dev 26(10):1022-1027.
    • (2012) Genes Dev , vol.26 , Issue.10 , pp. 1022-1027
    • Gutmann, B.1    Gobert, A.2    Giegé, P.3
  • 17
    • 67650100790 scopus 로고    scopus 로고
    • Processing of a dicistronic tRNA-snoRNA precursor: Combined analysis in vitro and in vivo reveals alternate pathways and coupling to assembly of snoRNP
    • Barbezier N, et al. (2009) Processing of a dicistronic tRNA-snoRNA precursor: combined analysis in vitro and in vivo reveals alternate pathways and coupling to assembly of snoRNP. Plant Physiol 150(3):1598-1610.
    • (2009) Plant Physiol , vol.150 , Issue.3 , pp. 1598-1610
    • Barbezier, N.1
  • 18
    • 67650129853 scopus 로고    scopus 로고
    • Arabidopsis encodes four tRNase Z enzymes
    • Canino G, et al. (2009) Arabidopsis encodes four tRNase Z enzymes. Plant Physiol 150(3):1494-1502.
    • (2009) Plant Physiol , vol.150 , Issue.3 , pp. 1494-1502
    • Canino, G.1
  • 19
    • 0037415721 scopus 로고    scopus 로고
    • Plant dicistronic tRNA-snoRNA genes: A new mode of expression of the small nucleolar RNAs processed by RNase Z
    • Kruszka K, et al. (2003) Plant dicistronic tRNA-snoRNA genes: A new mode of expression of the small nucleolar RNAs processed by RNase Z. EMBO J 22(3):621-632.
    • (2003) EMBO J , vol.22 , Issue.3 , pp. 621-632
    • Kruszka, K.1
  • 20
    • 0019365078 scopus 로고
    • Organization and structure of an E. Coli tRNA operon containing seven tRNA genes
    • Nakajima N, Ozeki H, Shimura Y (1981) Organization and structure of an E. coli tRNA operon containing seven tRNA genes. Cell 23(1):239-249.
    • (1981) Cell , vol.23 , Issue.1 , pp. 239-249
    • Nakajima, N.1    Ozeki, H.2    Shimura, Y.3
  • 21
    • 0028001399 scopus 로고
    • Upstream tRNA genes are essential for expression of small nuclear and cytoplasmic RNA genes in trypanosomes
    • Nakaar V, Dare AO, Hong D, Ullu E, Tschudi C (1994) Upstream tRNA genes are essential for expression of small nuclear and cytoplasmic RNA genes in trypanosomes. Mol Cell Biol 14(10):6736-6742.
    • (1994) Mol Cell Biol , vol.14 , Issue.10 , pp. 6736-6742
    • Nakaar, V.1    Dare, A.O.2    Hong, D.3    Ullu, E.4    Tschudi, C.5
  • 22
    • 79959373574 scopus 로고    scopus 로고
    • Transcription by RNA polymerase III: More complex than we thought
    • White RJ (2011) Transcription by RNA polymerase III: More complex than we thought. Nat Rev Genet 12(7):459-463.
    • (2011) Nat Rev Genet , vol.12 , Issue.7 , pp. 459-463
    • White, R.J.1
  • 24
    • 84884962826 scopus 로고    scopus 로고
    • RNA-guided genome editing in plants using a CRISPR-Cas system
    • Xie K, Yang Y (2013) RNA-guided genome editing in plants using a CRISPR-Cas system. Mol Plant 6(6):1975-1983.
    • (2013) Mol Plant , vol.6 , Issue.6 , pp. 1975-1983
    • Xie, K.1    Yang, Y.2
  • 25
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: A database of transfer RNA genes detected in genomic sequence
    • Chan PP, Lowe TM (2009) GtRNAdb: A database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-D97.
    • (2009) Nucleic Acids Res , vol.37 , Issue.Database issue , pp. D93-D97
    • Chan, P.P.1    Lowe, T.M.2
  • 26
    • 0037079666 scopus 로고    scopus 로고
    • RT-PCR analysis of 5' to 3'-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria
    • Kuhn J, Binder S (2002) RT-PCR analysis of 5' to 3'-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria. Nucleic Acids Res 30(2):439-446.
    • (2002) Nucleic Acids Res , vol.30 , Issue.2 , pp. 439-446
    • Kuhn, J.1    Binder, S.2
  • 27
    • 0028865434 scopus 로고
    • Transfer RNA editing in land snail mitochondria
    • Yokobori S, Pääbo S (1995) Transfer RNA editing in land snail mitochondria. Proc Natl Acad Sci USA 92(22):10432-10435.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.22 , pp. 10432-10435
    • Yokobori, S.1    Pääbo, S.2
  • 28
    • 56649114274 scopus 로고    scopus 로고
    • A one pot, one step, precision cloning method with high throughput capability
    • Engler C, Kandzia R, Marillonnet S (2008) A one pot, one step, precision cloning method with high throughput capability. PLoS ONE 3(11):e3647.
    • (2008) PLoS ONE , vol.3 , Issue.11 , pp. e3647
    • Engler, C.1    Kandzia, R.2    Marillonnet, S.3
  • 29
    • 84883828590 scopus 로고    scopus 로고
    • Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
    • Nekrasov V, Staskawicz B, Weigel D, Jones JD, Kamoun S (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol 31(8):691-693.
    • (2013) Nat Biotechnol , vol.31 , Issue.8 , pp. 691-693
    • Nekrasov, V.1    Staskawicz, B.2    Weigel, D.3    Jones, J.D.4    Kamoun, S.5
  • 30
    • 84896924524 scopus 로고    scopus 로고
    • Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis
    • Feng Z, et al. (2014) Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc Natl Acad Sci USA 111(12):4632-4637.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.12 , pp. 4632-4637
    • Feng, Z.1
  • 31
    • 84921934205 scopus 로고    scopus 로고
    • Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew
    • Wang Y, et al. (2014) Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew. Nat Biotechnol 32(9):947-951.
    • (2014) Nat Biotechnol , vol.32 , Issue.9 , pp. 947-951
    • Wang, Y.1
  • 32
    • 84904639258 scopus 로고    scopus 로고
    • The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation
    • Zhang H, et al. (2014) The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnol J 12(6):797-807.
    • (2014) Plant Biotechnol J , vol.12 , Issue.6 , pp. 797-807
    • Zhang, H.1
  • 33
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran FA, et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154(6):1380-1389.
    • (2013) Cell , vol.154 , Issue.6 , pp. 1380-1389
    • Ran, F.A.1
  • 34
    • 84902210542 scopus 로고    scopus 로고
    • Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification
    • Guilinger JP, Thompson DB, Liu DR (2014) Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Nat Biotechnol 32(6):577-582.
    • (2014) Nat Biotechnol , vol.32 , Issue.6 , pp. 577-582
    • Guilinger, J.P.1    Thompson, D.B.2    Liu, D.R.3
  • 35
    • 84880571335 scopus 로고    scopus 로고
    • CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes
    • Gilbert LA, et al. (2013) CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154(2):442-451.
    • (2013) Cell , vol.154 , Issue.2 , pp. 442-451
    • Gilbert, L.A.1
  • 36
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali P, et al. (2013) CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31(9):833-838.
    • (2013) Nat Biotechnol , vol.31 , Issue.9 , pp. 833-838
    • Mali, P.1
  • 37
    • 0025193146 scopus 로고
    • External guide sequences for an RNA enzyme
    • Forster AC, Altman S (1990) External guide sequences for an RNA enzyme. Science 249(4970):783-786.
    • (1990) Science , vol.249 , Issue.4970 , pp. 783-786
    • Forster, A.C.1    Altman, S.2
  • 38
    • 84899895901 scopus 로고    scopus 로고
    • Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-mediated genome editing in model plants and major crops
    • Xie K, Zhang J, Yang Y (2014) Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-mediated genome editing in model plants and major crops. Mol Plant 7(5):923-926.
    • (2014) Mol Plant , vol.7 , Issue.5 , pp. 923-926
    • Xie, K.1    Zhang, J.2    Yang, Y.3
  • 39
    • 43149106949 scopus 로고    scopus 로고
    • Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed
    • Hiei Y, Komari T (2008) Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed. Nat Protoc 3(5):824-834.
    • (2008) Nat Protoc , vol.3 , Issue.5 , pp. 824-834
    • Hiei, Y.1    Komari, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.